RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 DPYDQ12882 1025 aa13.02□□□□□ -0.33
VRK3-223ENST00000601341 ITGB3BPQ13352 177 aaPredicted RBP13.02□□□□□ -0.33
VRK3-223ENST00000601341 HYIQ5T013 277 aa13.02□□□□□ -0.33
VRK3-223ENST00000601341 ISM2Q6H9L7 571 aa13.02□□□□□ -0.33
VRK3-223ENST00000601341 C17orf99Q6UX52 265 aa13.02□□□□□ -0.33
VRK3-223ENST00000601341 SMAP1Q8IYB5 467 aaPredicted RBP13.02□□□□□ -0.33
VRK3-223ENST00000601341 CAPNS2Q96L46 248 aa13.02□□□□□ -0.33
VRK3-223ENST00000601341 ZIC5Q96T25 663 aa13.02□□□□□ -0.33
VRK3-223ENST00000601341 NUDT12Q9BQG2 462 aa13.02□□□□□ -0.33
VRK3-223ENST00000601341 NAA15Q9BXJ9 866 aaKnown RBP13.02□□□□□ -0.33
VRK3-223ENST00000601341 PKD2L1Q9P0L9 805 aa13.02□□□□□ -0.33
VRK3-223ENST00000601341 ASB14A6NK59 587 aa13.01□□□□□ -0.33
VRK3-223ENST00000601341 SPATA31C2B4DYI2 1134 aa13.01□□□□□ -0.33
VRK3-223ENST00000601341 FOXN1O15353 648 aa13.01□□□□□ -0.33
VRK3-223ENST00000601341 CA12O43570 354 aa13.01□□□□□ -0.33
VRK3-223ENST00000601341 CHMP2AO43633 222 aa13.01□□□□□ -0.33
VRK3-223ENST00000601341 CDK11BP21127 795 aaKnown RBP13.01□□□□□ -0.33
VRK3-223ENST00000601341 AFMP43652 599 aa13.01□□□□□ -0.33
VRK3-223ENST00000601341 CUL4BQ13620 913 aa13.01□□□□□ -0.33
VRK3-223ENST00000601341 NR1I3Q14994 352 aa13.01□□□□□ -0.33
VRK3-223ENST00000601341 TMEM119Q4V9L6 283 aa13.01□□□□□ -0.33
VRK3-223ENST00000601341 B3GNT9Q6UX72 402 aa13.01□□□□□ -0.33
VRK3-223ENST00000601341 KCTD17Q8N5Z5 321 aa13.01□□□□□ -0.33
VRK3-223ENST00000601341 TSC1Q92574 1164 aa13.01□□□□□ -0.33
VRK3-223ENST00000601341 PNMA5Q96PV4 448 aa13.01□□□□□ -0.33
VRK3-223ENST00000601341 POLR3CQ9BUI4 534 aaPredicted RBP13.01□□□□□ -0.33
VRK3-223ENST00000601341 UNC45AQ9H3U1 944 aa13.01□□□□□ -0.33
VRK3-223ENST00000601341 INTS13Q9NVM9 706 aa13.01□□□□□ -0.33
VRK3-223ENST00000601341 KBTBD4Q9NVX7 518 aa13.01□□□□□ -0.33
VRK3-223ENST00000601341 TRMT1Q9NXH9 659 aaKnown RBP13.01□□□□□ -0.33
VRK3-223ENST00000601341 TCEAL9Q9UHQ7 104 aa13.01□□□□□ -0.33
VRK3-223ENST00000601341 SLC15A5A6NIM6 579 aa13□□□□□ -0.33
VRK3-223ENST00000601341 EML1O00423 815 aa13□□□□□ -0.33
VRK3-223ENST00000601341 ATP9AO75110 1047 aa13□□□□□ -0.33
VRK3-223ENST00000601341 PRR29P0C7W0 189 aa13□□□□□ -0.33
VRK3-223ENST00000601341 ICAM3P32942 547 aa13□□□□□ -0.33
VRK3-223ENST00000601341 AMPD3Q01432 767 aa13□□□□□ -0.33
VRK3-223ENST00000601341 CRHR2Q13324 411 aa13□□□□□ -0.33
VRK3-223ENST00000601341 GRB14Q14449 540 aa13□□□□□ -0.33
VRK3-223ENST00000601341 EPHA7Q15375 998 aa13□□□□□ -0.33
VRK3-223ENST00000601341 ZNF792Q3KQV3 632 aa13□□□□□ -0.33
VRK3-223ENST00000601341 DPP9Q86TI2 863 aa13□□□□□ -0.33
VRK3-223ENST00000601341 CATSPER3Q86XQ3 398 aa13□□□□□ -0.33
VRK3-223ENST00000601341 TMEM139Q8IV31 216 aa13□□□□□ -0.33
VRK3-223ENST00000601341 GRAMD1CQ8IYS0 662 aa13□□□□□ -0.33
VRK3-223ENST00000601341 MORC4Q8TE76 937 aa13□□□□□ -0.33
VRK3-223ENST00000601341 ZNF592Q92610 1267 aa13□□□□□ -0.33
VRK3-223ENST00000601341 FGD4Q96M96 766 aa13□□□□□ -0.33
VRK3-223ENST00000601341 PANX2Q96RD6 677 aa13□□□□□ -0.33
VRK3-223ENST00000601341 EIF2AK1Q9BQI3 630 aaKnown RBP13□□□□□ -0.33
VRK3-223ENST00000601341 GTPBP4Q9BZE4 634 aaKnown RBP13□□□□□ -0.33
VRK3-223ENST00000601341 RMND1Q9NWS8 449 aa13□□□□□ -0.33
VRK3-223ENST00000601341 KIAA1024Q9UPX6 916 aa13□□□□□ -0.33
VRK3-223ENST00000601341 NFASCO94856 1347 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 ITIH6Q6UXX5 1313 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 POTEB3A0JP26 581 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 DDX39AO00148 427 aaKnown RBP12.99□□□□□ -0.33
VRK3-223ENST00000601341 GTPBP6O43824 516 aaPredicted RBP12.99□□□□□ -0.33
VRK3-223ENST00000601341 COBLO75128 1261 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 MED24O75448 989 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 SPATA31C1P0DKV0 1188 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 TGFB3P10600 412 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 MUTP22033 750 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 KRT76Q01546 638 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 SPAG1Q07617 926 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 ECM1Q16610 540 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 CDKAL1Q5VV42 579 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 POTEBQ6S5H4 581 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 SV2BQ7L1I2 683 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 MIER3Q7Z3K6 550 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 ZNF467Q7Z7K2 595 aaPredicted RBP12.99□□□□□ -0.33
VRK3-223ENST00000601341 LARP4BQ92615 738 aaKnown RBP12.99□□□□□ -0.33
VRK3-223ENST00000601341 RAD54LQ92698 747 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 BAG1Q99933 345 aaPredicted RBP12.99□□□□□ -0.33
VRK3-223ENST00000601341 HSD17B14Q9BPX1 270 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 SENP7Q9BQF6 1050 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 TUFT1Q9NNX1 390 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 BLOC1S4Q9NUP1 217 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 SLC5A4Q9NY91 659 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 DIS3Q9Y2L1 958 aaKnown RBP12.99□□□□□ -0.33
VRK3-223ENST00000601341 LRRC10BA6NIK2 292 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 AOC2O75106 756 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 KCNA2P16389 499 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 SFNP31947 248 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 JAK3P52333 1124 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 KCNV1Q6PIU1 500 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 SEPT14Q6ZU15 432 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 ZNF397Q8NF99 534 aaPredicted RBP12.99□□□□□ -0.33
VRK3-223ENST00000601341 NEK9Q8TD19 979 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 LRRC15Q8TF66 581 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 STAMQ92783 540 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 CCDC51Q96ER9 411 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 MTRQ99707 1265 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 LRRC27Q9C0I9 530 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 ZNF215Q9UL58 517 aaPredicted RBP12.99□□□□□ -0.33
VRK3-223ENST00000601341 DNM3Q9UQ16 869 aa12.99□□□□□ -0.33
VRK3-223ENST00000601341 SYNRGQ9UMZ2 1314 aa12.98□□□□□ -0.33
VRK3-223ENST00000601341 WDR64B1ANS9 1081 aa12.98□□□□□ -0.33
VRK3-223ENST00000601341 SLITRK3O94933 977 aa12.98□□□□□ -0.33
VRK3-223ENST00000601341 FILIP1LQ4L180 1135 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms