RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 NRCAMQ92823 1304 aa19.06■□□□□ 0.64
TRIM28-215ENST00000601150 FAM205CA6NFA0 338 aa19.06■□□□□ 0.64
TRIM28-215ENST00000601150 BACH1O14867 736 aa19.06■□□□□ 0.64
TRIM28-215ENST00000601150 CCNT1O60563 726 aaKnown RBP19.06■□□□□ 0.64
TRIM28-215ENST00000601150 SLC26A2P50443 739 aa19.06■□□□□ 0.64
TRIM28-215ENST00000601150 RBL2Q08999 1139 aa19.06■□□□□ 0.64
TRIM28-215ENST00000601150 SERINC5Q86VE9 423 aa19.06■□□□□ 0.64
TRIM28-215ENST00000601150 LMBR1Q8WVP7 490 aa19.06■□□□□ 0.64
TRIM28-215ENST00000601150 TNPO1Q92973 898 aaKnown RBP19.06■□□□□ 0.64
TRIM28-215ENST00000601150 SCLYQ96I15 445 aa19.06■□□□□ 0.64
TRIM28-215ENST00000601150 KIF3AQ9Y496 699 aa19.06■□□□□ 0.64
TRIM28-215ENST00000601150 WDR64B1ANS9 1081 aa19.05■□□□□ 0.64
TRIM28-215ENST00000601150 TREHO43280 583 aa19.05■□□□□ 0.64
TRIM28-215ENST00000601150 SLC37A4O43826 429 aa19.05■□□□□ 0.64
TRIM28-215ENST00000601150 PSAPP07602 524 aa19.05■□□□□ 0.64
TRIM28-215ENST00000601150 IQCF3P0C7M6 154 aa19.05■□□□□ 0.64
TRIM28-215ENST00000601150 RFC2P35250 354 aa19.05■□□□□ 0.64
TRIM28-215ENST00000601150 PPFIA1Q13136 1202 aa19.05■□□□□ 0.64
TRIM28-215ENST00000601150 LRIT3Q3SXY7 679 aa19.05■□□□□ 0.64
TRIM28-215ENST00000601150 CCDC60Q8IWA6 550 aaPredicted RBP19.05■□□□□ 0.64
TRIM28-215ENST00000601150 RPUSD2Q8IZ73 545 aaKnown RBP19.05■□□□□ 0.64
TRIM28-215ENST00000601150 FBXO18Q8NFZ0 1043 aa19.05■□□□□ 0.64
TRIM28-215ENST00000601150 ETNPPLQ8TBG4 499 aa19.05■□□□□ 0.64
TRIM28-215ENST00000601150 ZNF302Q9NR11 478 aa19.05■□□□□ 0.64
TRIM28-215ENST00000601150 SAMM50Q9Y512 469 aa19.05■□□□□ 0.64
TRIM28-215ENST00000601150 PCDHA10Q9Y5I2 948 aa19.05■□□□□ 0.64
TRIM28-215ENST00000601150 RANBP2P49792 3224 aaKnown RBP19.04■□□□□ 0.64
TRIM28-215ENST00000601150 PSMD10O75832 226 aa19.04■□□□□ 0.64
TRIM28-215ENST00000601150 ACRP10323 421 aa19.04■□□□□ 0.64
TRIM28-215ENST00000601150 CKBP12277 381 aa19.04■□□□□ 0.64
TRIM28-215ENST00000601150 SELPP16109 830 aa19.04■□□□□ 0.64
TRIM28-215ENST00000601150 SFNP31947 248 aa19.04■□□□□ 0.64
TRIM28-215ENST00000601150 FXR1P51114 621 aaKnown RBP eCLIP19.04■□□□□ 0.646e-8■□□□□ 11.2
TRIM28-215ENST00000601150 ADAM17P78536 824 aa19.04■□□□□ 0.64
TRIM28-215ENST00000601150 PLCB4Q15147 1175 aa19.04■□□□□ 0.64
TRIM28-215ENST00000601150 GRIK4Q16099 956 aa19.04■□□□□ 0.64
TRIM28-215ENST00000601150 TRIM71Q2Q1W2 868 aaKnown RBP19.04■□□□□ 0.64
TRIM28-215ENST00000601150 TMEM240Q5SV17 173 aa19.04■□□□□ 0.64
TRIM28-215ENST00000601150 SWSAP1Q6NVH7 229 aa19.04■□□□□ 0.64
TRIM28-215ENST00000601150 PDXDC2PQ6P474 469 aa19.04■□□□□ 0.64
TRIM28-215ENST00000601150 PSRC1Q6PGN9 363 aaPredicted RBP19.04■□□□□ 0.64
TRIM28-215ENST00000601150 LRRC8DQ7L1W4 858 aa19.04■□□□□ 0.64
TRIM28-215ENST00000601150 C16orf59Q7L2K0 433 aa19.04■□□□□ 0.64
TRIM28-215ENST00000601150 WNT8BQ93098 351 aa19.04■□□□□ 0.64
TRIM28-215ENST00000601150 GJA10Q969M2 543 aa19.04■□□□□ 0.64
TRIM28-215ENST00000601150 FAM20AQ96MK3 541 aa19.04■□□□□ 0.64
TRIM28-215ENST00000601150 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.04■□□□□ 0.645e-13■□□□□ 10.3
TRIM28-215ENST00000601150 TRPC6Q9Y210 931 aa19.04■□□□□ 0.64
TRIM28-215ENST00000601150 RRN3P2A6NIE6 340 aa19.03■□□□□ 0.64
TRIM28-215ENST00000601150 PFKMP08237 780 aa19.03■□□□□ 0.64
TRIM28-215ENST00000601150 JAK3P52333 1124 aa19.03■□□□□ 0.64
TRIM28-215ENST00000601150 ZNF365Q70YC5 407 aa19.03■□□□□ 0.64
TRIM28-215ENST00000601150 RNPC3Q96LT9 517 aaKnown RBP19.03■□□□□ 0.64
TRIM28-215ENST00000601150 FOXP1Q9H334 677 aaPredicted RBP19.03■□□□□ 0.64
TRIM28-215ENST00000601150 UNC45AQ9H3U1 944 aa19.03■□□□□ 0.64
TRIM28-215ENST00000601150 KCNMB3Q9NPA1 279 aa19.03■□□□□ 0.64
TRIM28-215ENST00000601150 DISC1Q9NRI5 854 aa19.03■□□□□ 0.64
TRIM28-215ENST00000601150 POTEB3A0JP26 581 aa19.02■□□□□ 0.64
TRIM28-215ENST00000601150 TBX3O15119 743 aa19.02■□□□□ 0.64
TRIM28-215ENST00000601150 CHMP2AO43633 222 aa19.02■□□□□ 0.64
TRIM28-215ENST00000601150 PARNO95453 639 aaKnown RBP19.02■□□□□ 0.64
TRIM28-215ENST00000601150 FGBP02675 491 aa19.02■□□□□ 0.64
TRIM28-215ENST00000601150 INSRRP14616 1297 aa19.02■□□□□ 0.64
TRIM28-215ENST00000601150 THPOP40225 353 aa19.02■□□□□ 0.64
TRIM28-215ENST00000601150 POTEBQ6S5H4 581 aa19.02■□□□□ 0.64
TRIM28-215ENST00000601150 DEFB128Q7Z7B8 93 aa19.02■□□□□ 0.64
TRIM28-215ENST00000601150 RDM1Q8NG50 284 aa19.02■□□□□ 0.64
TRIM28-215ENST00000601150 ATP8B4Q8TF62 1192 aa19.02■□□□□ 0.64
TRIM28-215ENST00000601150 GABBR1Q9UBS5 961 aa19.02■□□□□ 0.64
TRIM28-215ENST00000601150 TUBE1Q9UJT0 475 aa19.02■□□□□ 0.64
TRIM28-215ENST00000601150 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.02■□□□□ 0.64
TRIM28-215ENST00000601150 MAFBQ9Y5Q3 323 aaPredicted RBP19.02■□□□□ 0.64
TRIM28-215ENST00000601150 MARCH6O60337 910 aa19.01■□□□□ 0.63
TRIM28-215ENST00000601150 HBP1O60381 514 aa19.01■□□□□ 0.63
TRIM28-215ENST00000601150 CAND2O75155 1236 aa19.01■□□□□ 0.63
TRIM28-215ENST00000601150 IGBP1P78318 339 aa19.01■□□□□ 0.63
TRIM28-215ENST00000601150 GNL2Q13823 731 aaKnown RBP19.01■□□□□ 0.63
TRIM28-215ENST00000601150 ZNF618Q5T7W0 954 aa19.01■□□□□ 0.63
TRIM28-215ENST00000601150 MIER3Q7Z3K6 550 aa19.01■□□□□ 0.63
TRIM28-215ENST00000601150 POTEDQ86YR6 584 aa19.01■□□□□ 0.63
TRIM28-215ENST00000601150 CKAP2LQ8IYA6 745 aa19.01■□□□□ 0.63
TRIM28-215ENST00000601150 VWCEQ96DN2 955 aa19.01■□□□□ 0.63
TRIM28-215ENST00000601150 SMC3Q9UQE7 1217 aa19.01■□□□□ 0.63
TRIM28-215ENST00000601150 IGSF9BQ9UPX0 1349 aa19■□□□□ 0.63
TRIM28-215ENST00000601150 TET1Q8NFU7 2136 aa19■□□□□ 0.63
TRIM28-215ENST00000601150 MBLAC1A4D2B0 266 aaPredicted RBP19■□□□□ 0.63
TRIM28-215ENST00000601150 SOX1O00570 391 aaPredicted RBP19■□□□□ 0.63
TRIM28-215ENST00000601150 BAG4O95429 457 aaKnown RBP19■□□□□ 0.63
TRIM28-215ENST00000601150 GJB2P29033 226 aa19■□□□□ 0.63
TRIM28-215ENST00000601150 MARCH8Q5T0T0 291 aa19■□□□□ 0.63
TRIM28-215ENST00000601150 TAF2Q6P1X5 1199 aa19■□□□□ 0.63
TRIM28-215ENST00000601150 TRAF7Q6Q0C0 670 aa19■□□□□ 0.63
TRIM28-215ENST00000601150 B3GNT9Q6UX72 402 aa19■□□□□ 0.63
TRIM28-215ENST00000601150 SLFN12Q8IYM2 578 aa19■□□□□ 0.63
TRIM28-215ENST00000601150 HERVK_113Q902F9 699 aa19■□□□□ 0.63
TRIM28-215ENST00000601150 MTIF3Q9H2K0 278 aaKnown RBP19■□□□□ 0.63
TRIM28-215ENST00000601150 COL1A2P08123 1366 aa19■□□□□ 0.63
TRIM28-215ENST00000601150 RSPH10B2B2RC85 870 aa18.99■□□□□ 0.63
TRIM28-215ENST00000601150 RSPH10BP0C881 870 aa18.99■□□□□ 0.63
TRIM28-215ENST00000601150 ATP4AP20648 1035 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms