RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 MXRA8Q9BRK3 442 aa20.1■□□□□ 0.81
SHKBP1-223ENST00000600552 SDF4Q9BRK5 362 aa20.1■□□□□ 0.81
SHKBP1-223ENST00000600552 KCNH7Q9NS40 1196 aa20.1■□□□□ 0.81
SHKBP1-223ENST00000600552 SLC9A2Q9UBY0 812 aa20.1■□□□□ 0.81
SHKBP1-223ENST00000600552 CDY2AQ9Y6F7 541 aa20.1■□□□□ 0.81
SHKBP1-223ENST00000600552 INSRRP14616 1297 aa20.09■□□□□ 0.81
SHKBP1-223ENST00000600552 LPIN1Q14693 890 aa20.09■□□□□ 0.81
SHKBP1-223ENST00000600552 TAF2Q6P1X5 1199 aa20.09■□□□□ 0.81
SHKBP1-223ENST00000600552 TMEM192Q8IY95 271 aa20.09■□□□□ 0.81
SHKBP1-223ENST00000600552 TRAPPC12Q8WVT3 735 aa20.09■□□□□ 0.81
SHKBP1-223ENST00000600552 IL17RAQ96F46 866 aa20.09■□□□□ 0.81
SHKBP1-223ENST00000600552 ANO3Q9BYT9 981 aa20.09■□□□□ 0.81
SHKBP1-223ENST00000600552 UBE2ZQ9H832 354 aaPredicted RBP20.09■□□□□ 0.81
SHKBP1-223ENST00000600552 RIC8AQ9NPQ8 531 aa20.09■□□□□ 0.81
SHKBP1-223ENST00000600552 BRWD1Q9NSI6 2320 aa20.09■□□□□ 0.81
SHKBP1-223ENST00000600552 CDC45O75419 566 aa20.08■□□□□ 0.81
SHKBP1-223ENST00000600552 KCNA5P22460 613 aa20.08■□□□□ 0.81
SHKBP1-223ENST00000600552 PTPROQ16827 1216 aa20.08■□□□□ 0.81
SHKBP1-223ENST00000600552 JAKMIP3Q5VZ66 844 aa20.08■□□□□ 0.81
SHKBP1-223ENST00000600552 FIBCD1Q8N539 461 aa20.08■□□□□ 0.81
SHKBP1-223ENST00000600552 SP7Q8TDD2 431 aaPredicted RBP20.08■□□□□ 0.81
SHKBP1-223ENST00000600552 PCYT2Q99447 389 aa20.08■□□□□ 0.81
SHKBP1-223ENST00000600552 BDP1A6H8Y1 2624 aa20.07■□□□□ 0.8
SHKBP1-223ENST00000600552 STXBP3O00186 592 aa20.07■□□□□ 0.8
SHKBP1-223ENST00000600552 MAFGO15525 162 aa20.07■□□□□ 0.8
SHKBP1-223ENST00000600552 CTNNB1P35222 781 aa20.07■□□□□ 0.8
SHKBP1-223ENST00000600552 ACTR2P61160 394 aa20.07■□□□□ 0.8
SHKBP1-223ENST00000600552 MRPS6P82932 125 aaKnown RBP20.07■□□□□ 0.8
SHKBP1-223ENST00000600552 MARCH8Q5T0T0 291 aa20.07■□□□□ 0.8
SHKBP1-223ENST00000600552 RRN3P2A6NIE6 340 aa20.06■□□□□ 0.8
SHKBP1-223ENST00000600552 ENPP3O14638 875 aa20.06■□□□□ 0.8
SHKBP1-223ENST00000600552 FOSP01100 380 aaPredicted RBP20.06■□□□□ 0.8
SHKBP1-223ENST00000600552 CDC27P30260 824 aa20.06■□□□□ 0.8
SHKBP1-223ENST00000600552 CD52P31358 61 aa20.06■□□□□ 0.8
SHKBP1-223ENST00000600552 MGAT3Q09327 533 aa20.06■□□□□ 0.8
SHKBP1-223ENST00000600552 APOBRQ0VD83 1088 aa20.06■□□□□ 0.8
SHKBP1-223ENST00000600552 KRT32Q14532 448 aa20.06■□□□□ 0.8
SHKBP1-223ENST00000600552 PLCB4Q15147 1175 aa20.06■□□□□ 0.8
SHKBP1-223ENST00000600552 CEP55Q53EZ4 464 aa20.06■□□□□ 0.8
SHKBP1-223ENST00000600552 FBXO47Q5MNV8 452 aa20.06■□□□□ 0.8
SHKBP1-223ENST00000600552 MRPL38Q96DV4 380 aaKnown RBP20.06■□□□□ 0.8
SHKBP1-223ENST00000600552 SAMD11Q96NU1 681 aa20.06■□□□□ 0.8
SHKBP1-223ENST00000600552 AGO4Q9HCK5 861 aaKnown RBP20.06■□□□□ 0.8
SHKBP1-223ENST00000600552 M0QZ92 97 aa20.05■□□□□ 0.8
SHKBP1-223ENST00000600552 BACH1O14867 736 aa20.05■□□□□ 0.8
SHKBP1-223ENST00000600552 PPFIA3O75145 1194 aa20.05■□□□□ 0.8
SHKBP1-223ENST00000600552 ADD1P35611 737 aaKnown RBP20.05■□□□□ 0.8
SHKBP1-223ENST00000600552 STAT5BP51692 787 aa20.05■□□□□ 0.8
SHKBP1-223ENST00000600552 FUT2Q10981 343 aa20.05■□□□□ 0.8
SHKBP1-223ENST00000600552 ITGB3BPQ13352 177 aaPredicted RBP20.05■□□□□ 0.8
SHKBP1-223ENST00000600552 PPP1R18Q6NYC8 613 aa20.05■□□□□ 0.8
SHKBP1-223ENST00000600552 TRMT1LQ7Z2T5 733 aaKnown RBP20.05■□□□□ 0.8
SHKBP1-223ENST00000600552 BANK1Q8NDB2 785 aa20.05■□□□□ 0.8
SHKBP1-223ENST00000600552 JAKMIP1Q96N16 626 aaKnown RBP20.05■□□□□ 0.8
SHKBP1-223ENST00000600552 EPHX3Q9H6B9 360 aa20.05■□□□□ 0.8
SHKBP1-223ENST00000600552 BARHL2Q9NY43 387 aa20.05■□□□□ 0.8
SHKBP1-223ENST00000600552 GINS2Q9Y248 185 aa20.05■□□□□ 0.8
SHKBP1-223ENST00000600552 NLRC5Q86WI3 1866 aa20.05■□□□□ 0.8
SHKBP1-223ENST00000600552 MYO7AQ13402 2215 aa20.04■□□□□ 0.8
SHKBP1-223ENST00000600552 MBLAC1A4D2B0 266 aaPredicted RBP20.04■□□□□ 0.8
SHKBP1-223ENST00000600552 H3BNC9 293 aa20.04■□□□□ 0.8
SHKBP1-223ENST00000600552 H3BQ06 376 aaPredicted RBP20.04■□□□□ 0.8
SHKBP1-223ENST00000600552 METAP2P50579 478 aaKnown RBP eCLIP20.04■□□□□ 0.8
SHKBP1-223ENST00000600552 BTG3Q14201 252 aaPredicted RBP20.04■□□□□ 0.8
SHKBP1-223ENST00000600552 TCEAL5Q5H9L2 206 aa20.04■□□□□ 0.8
SHKBP1-223ENST00000600552 IER5Q5VY09 327 aa20.04■□□□□ 0.8
SHKBP1-223ENST00000600552 Q6ZUG5 572 aa20.04■□□□□ 0.8
SHKBP1-223ENST00000600552 PLA2G4DQ86XP0 818 aa20.04■□□□□ 0.8
SHKBP1-223ENST00000600552 AGO3Q9H9G7 860 aaKnown RBP20.04■□□□□ 0.8
SHKBP1-223ENST00000600552 FAM217BQ9NTX9 383 aaPredicted RBP20.04■□□□□ 0.8
SHKBP1-223ENST00000600552 POTEB3A0JP26 581 aa20.03■□□□□ 0.8
SHKBP1-223ENST00000600552 POTEBQ6S5H4 581 aa20.03■□□□□ 0.8
SHKBP1-223ENST00000600552 TSHZ1Q6ZSZ6 1077 aa20.03■□□□□ 0.8
SHKBP1-223ENST00000600552 RPAINQ86UA6 219 aa20.03■□□□□ 0.8
SHKBP1-223ENST00000600552 TNPO1Q92973 898 aaKnown RBP20.03■□□□□ 0.8
SHKBP1-223ENST00000600552 TRPV2Q9Y5S1 764 aa20.03■□□□□ 0.8
SHKBP1-223ENST00000600552 NFASCO94856 1347 aa20.02■□□□□ 0.8
SHKBP1-223ENST00000600552 LOXHD1Q8IVV2 1947 aa20.02■□□□□ 0.8
SHKBP1-223ENST00000600552 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-223ENST00000600552 MEIS1O00470 390 aa20.02■□□□□ 0.8
SHKBP1-223ENST00000600552 HMGB1P09429 215 aaKnown RBP20.02■□□□□ 0.8
SHKBP1-223ENST00000600552 SSTR3P32745 418 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-223ENST00000600552 TSGA10IPQ3SY00 556 aa20.02■□□□□ 0.8
SHKBP1-223ENST00000600552 PAN2Q504Q3 1202 aaKnown RBP20.02■□□□□ 0.8
SHKBP1-223ENST00000600552 TIGD5Q53EQ6 642 aa20.02■□□□□ 0.8
SHKBP1-223ENST00000600552 PTCRAQ6ISU1 281 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-223ENST00000600552 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-223ENST00000600552 BRF1Q92994 677 aa20.02■□□□□ 0.8
SHKBP1-223ENST00000600552 PPP1R16BQ96T49 567 aa20.02■□□□□ 0.8
SHKBP1-223ENST00000600552 C1QTNF1Q9BXJ1 281 aa20.02■□□□□ 0.8
SHKBP1-223ENST00000600552 GLT8D2Q9H1C3 349 aa20.02■□□□□ 0.8
SHKBP1-223ENST00000600552 XIRP2A4UGR9 3374 aa20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 hCG_1984214I3L0E3 225 aa20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 ADAMTS3O15072 1205 aa20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 CCNE2O96020 404 aa20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 SCG2P13521 617 aa20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 BMPR1AP36894 532 aa20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 SREBF1P36956 1147 aa20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 PAK2Q13177 524 aa20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 AP3B2Q13367 1082 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms