RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 SPDYE3A6NKU9 549 aa14.28□□□□□ -0.12
UPF1-203ENST00000594504 ZBTB43O43298 467 aa14.28□□□□□ -0.12
UPF1-203ENST00000594504 ARP10275 920 aa14.28□□□□□ -0.12
UPF1-203ENST00000594504 MGAT3Q09327 533 aa14.28□□□□□ -0.12
UPF1-203ENST00000594504 PPFIA1Q13136 1202 aa14.28□□□□□ -0.12
UPF1-203ENST00000594504 GPM6BQ13491 265 aa14.28□□□□□ -0.12
UPF1-203ENST00000594504 LPIN1Q14693 890 aa14.28□□□□□ -0.12
UPF1-203ENST00000594504 WWC2Q6AWC2 1192 aa14.28□□□□□ -0.12
UPF1-203ENST00000594504 NLRC5Q86WI3 1866 aa14.28□□□□□ -0.12
UPF1-203ENST00000594504 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.28□□□□□ -0.12
UPF1-203ENST00000594504 BRF1Q92994 677 aa14.28□□□□□ -0.12
UPF1-203ENST00000594504 IL17RAQ96F46 866 aa14.28□□□□□ -0.12
UPF1-203ENST00000594504 EHMT1Q9H9B1 1298 aa14.28□□□□□ -0.12
UPF1-203ENST00000594504 RBM28Q9NW13 759 aaKnown RBP14.28□□□□□ -0.12
UPF1-203ENST00000594504 REV3LO60673 3130 aa14.28□□□□□ -0.12
UPF1-203ENST00000594504 H3BNC9 293 aa14.27□□□□□ -0.13
UPF1-203ENST00000594504 ENPP3O14638 875 aa14.27□□□□□ -0.13
UPF1-203ENST00000594504 INSRRP14616 1297 aa14.27□□□□□ -0.13
UPF1-203ENST00000594504 KCNA5P22460 613 aa14.27□□□□□ -0.13
UPF1-203ENST00000594504 TRAPPC12Q8WVT3 735 aa14.27□□□□□ -0.13
UPF1-203ENST00000594504 APBB2Q92870 758 aa14.27□□□□□ -0.13
UPF1-203ENST00000594504 MRPL38Q96DV4 380 aaKnown RBP14.27□□□□□ -0.13
UPF1-203ENST00000594504 CDHR1Q96JP9 859 aa14.27□□□□□ -0.13
UPF1-203ENST00000594504 MXRA8Q9BRK3 442 aa14.27□□□□□ -0.13
UPF1-203ENST00000594504 UPF3BQ9BZI7 483 aaKnown RBP14.27□□□□□ -0.13
UPF1-203ENST00000594504 SMARCAD1Q9H4L7 1026 aa14.27□□□□□ -0.13
UPF1-203ENST00000594504 TMEM260Q9NX78 707 aa14.27□□□□□ -0.13
UPF1-203ENST00000594504 ERAP1Q9NZ08 941 aa14.27□□□□□ -0.13
UPF1-203ENST00000594504 CDY2AQ9Y6F7 541 aa14.27□□□□□ -0.13
UPF1-203ENST00000594504 V9GY48 417 aaPredicted RBP14.27□□□□□ -0.13
UPF1-203ENST00000594504 CUL9Q8IWT3 2517 aa14.27□□□□□ -0.13
UPF1-203ENST00000594504 CNTNAP5Q8WYK1 1306 aa14.26□□□□□ -0.13
UPF1-203ENST00000594504 GOLGA8AA7E2F4 631 aa14.26□□□□□ -0.13
UPF1-203ENST00000594504 GOLGA8BA8MQT2 603 aa14.26□□□□□ -0.13
UPF1-203ENST00000594504 IL9P15248 144 aa14.26□□□□□ -0.13
UPF1-203ENST00000594504 NAPAP54920 295 aa14.26□□□□□ -0.13
UPF1-203ENST00000594504 TMEM62Q0P6H9 643 aa14.26□□□□□ -0.13
UPF1-203ENST00000594504 APOBRQ0VD83 1088 aa14.26□□□□□ -0.13
UPF1-203ENST00000594504 RTN1Q16799 776 aa14.26□□□□□ -0.13
UPF1-203ENST00000594504 TCEAL5Q5H9L2 206 aa14.26□□□□□ -0.13
UPF1-203ENST00000594504 RPAINQ86UA6 219 aa14.26□□□□□ -0.13
UPF1-203ENST00000594504 RTN4RL1Q86UN2 441 aaPredicted RBP14.26□□□□□ -0.13
UPF1-203ENST00000594504 UIMC1Q96RL1 719 aa14.26□□□□□ -0.13
UPF1-203ENST00000594504 FAM49AQ9H0Q0 323 aaPredicted RBP14.26□□□□□ -0.13
UPF1-203ENST00000594504 AGO3Q9H9G7 860 aaKnown RBP14.26□□□□□ -0.13
UPF1-203ENST00000594504 KCNH7Q9NS40 1196 aa14.26□□□□□ -0.13
UPF1-203ENST00000594504 SLC9A2Q9UBY0 812 aa14.26□□□□□ -0.13
UPF1-203ENST00000594504 TUBE1Q9UJT0 475 aa14.26□□□□□ -0.13
UPF1-203ENST00000594504 NAP1L2Q9ULW6 460 aaPredicted RBP14.26□□□□□ -0.13
UPF1-203ENST00000594504 CCDC196A0A1B0GTZ2 297 aa14.25□□□□□ -0.13
UPF1-203ENST00000594504 MBLAC1A4D2B0 266 aaPredicted RBP14.25□□□□□ -0.13
UPF1-203ENST00000594504 MAFGO15525 162 aa14.25□□□□□ -0.13
UPF1-203ENST00000594504 CDC27P30260 824 aa14.25□□□□□ -0.13
UPF1-203ENST00000594504 METAP2P50579 478 aaKnown RBP eCLIP14.25□□□□□ -0.13
UPF1-203ENST00000594504 EVCP57679 992 aa14.25□□□□□ -0.13
UPF1-203ENST00000594504 FUT2Q10981 343 aa14.25□□□□□ -0.13
UPF1-203ENST00000594504 PLCB4Q15147 1175 aa14.25□□□□□ -0.13
UPF1-203ENST00000594504 LEXMQ3ZCV2 418 aa14.25□□□□□ -0.13
UPF1-203ENST00000594504 FBXO47Q5MNV8 452 aa14.25□□□□□ -0.13
UPF1-203ENST00000594504 TAF2Q6P1X5 1199 aa14.25□□□□□ -0.13
UPF1-203ENST00000594504 EP400NLQ6ZTU2 488 aa14.25□□□□□ -0.13
UPF1-203ENST00000594504 FIBCD1Q8N539 461 aa14.25□□□□□ -0.13
UPF1-203ENST00000594504 BANK1Q8NDB2 785 aa14.25□□□□□ -0.13
UPF1-203ENST00000594504 SAMD11Q96NU1 681 aa14.25□□□□□ -0.13
UPF1-203ENST00000594504 C1QTNF1Q9BXJ1 281 aa14.25□□□□□ -0.13
UPF1-203ENST00000594504 JPH1Q9HDC5 661 aaPredicted RBP14.25□□□□□ -0.13
UPF1-203ENST00000594504 RIC8AQ9NPQ8 531 aa14.25□□□□□ -0.13
UPF1-203ENST00000594504 FAM217BQ9NTX9 383 aaPredicted RBP14.25□□□□□ -0.13
UPF1-203ENST00000594504 PDRG1Q9NUG6 133 aa14.25□□□□□ -0.13
UPF1-203ENST00000594504 LOXHD1Q8IVV2 1947 aa14.25□□□□□ -0.13
UPF1-203ENST00000594504 NID2Q14112 1375 aa14.24□□□□□ -0.13
UPF1-203ENST00000594504 SMCO2A6NFE2 343 aa14.24□□□□□ -0.13
UPF1-203ENST00000594504 H3BQ06 376 aaPredicted RBP14.24□□□□□ -0.13
UPF1-203ENST00000594504 DDX39AO00148 427 aaKnown RBP14.24□□□□□ -0.13
UPF1-203ENST00000594504 STXBP3O00186 592 aa14.24□□□□□ -0.13
UPF1-203ENST00000594504 ADAMTS3O15072 1205 aa14.24□□□□□ -0.13
UPF1-203ENST00000594504 CSPG5O95196 566 aa14.24□□□□□ -0.13
UPF1-203ENST00000594504 LINC00271P0C7V0 271 aa14.24□□□□□ -0.13
UPF1-203ENST00000594504 CD52P31358 61 aa14.24□□□□□ -0.13
UPF1-203ENST00000594504 ACTR2P61160 394 aa14.24□□□□□ -0.13
UPF1-203ENST00000594504 MRPS6P82932 125 aaKnown RBP14.24□□□□□ -0.13
UPF1-203ENST00000594504 ITGB3BPQ13352 177 aaPredicted RBP14.24□□□□□ -0.13
UPF1-203ENST00000594504 TOB2Q14106 344 aaPredicted RBP14.24□□□□□ -0.13
UPF1-203ENST00000594504 PTPROQ16827 1216 aa14.24□□□□□ -0.13
UPF1-203ENST00000594504 RSPH3Q86UC2 560 aa14.24□□□□□ -0.13
UPF1-203ENST00000594504 LINC01599Q8WXQ3 324 aa14.24□□□□□ -0.13
UPF1-203ENST00000594504 LRFN3Q9BTN0 628 aa14.24□□□□□ -0.13
UPF1-203ENST00000594504 ANO3Q9BYT9 981 aa14.24□□□□□ -0.13
UPF1-203ENST00000594504 ATG2AQ2TAZ0 1938 aa14.23□□□□□ -0.13
UPF1-203ENST00000594504 FAM86C2PA6NEL3 165 aa14.23□□□□□ -0.13
UPF1-203ENST00000594504 RRN3P2A6NIE6 340 aa14.23□□□□□ -0.13
UPF1-203ENST00000594504 GRM6O15303 877 aa14.23□□□□□ -0.13
UPF1-203ENST00000594504 CTNNB1P35222 781 aa14.23□□□□□ -0.13
UPF1-203ENST00000594504 BMPR1AP36894 532 aa14.23□□□□□ -0.13
UPF1-203ENST00000594504 STAT5BP51692 787 aa14.23□□□□□ -0.13
UPF1-203ENST00000594504 PTCRAQ6ISU1 281 aaPredicted RBP14.23□□□□□ -0.13
UPF1-203ENST00000594504 FAM178BQ8IXR5 827 aa14.23□□□□□ -0.13
UPF1-203ENST00000594504 ZNF689Q96CS4 500 aaPredicted RBP14.23□□□□□ -0.13
UPF1-203ENST00000594504 SDF4Q9BRK5 362 aa14.23□□□□□ -0.13
UPF1-203ENST00000594504 AZI2Q9H6S1 392 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms