RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 SLC12A3P55017 1021 aa18.1■□□□□ 0.49
LIG1-206ENST00000594067 SF3B2Q13435 895 aaKnown RBP18.1■□□□□ 0.49
LIG1-206ENST00000594067 SHROOM1Q2M3G4 852 aaPredicted RBP18.1■□□□□ 0.49
LIG1-206ENST00000594067 MEI1Q5TIA1 1274 aa18.1■□□□□ 0.49
LIG1-206ENST00000594067 DNAAF5Q86Y56 855 aa18.1■□□□□ 0.49
LIG1-206ENST00000594067 DHX36Q9H2U1 1008 aaKnown RBP18.1■□□□□ 0.49
LIG1-206ENST00000594067 RNF14Q9UBS8 474 aa18.1■□□□□ 0.49
LIG1-206ENST00000594067 SLC9A1P19634 815 aa18.1■□□□□ 0.49
LIG1-206ENST00000594067 PDCLQ13371 301 aa18.1■□□□□ 0.49
LIG1-206ENST00000594067 IQCKQ8N0W5 287 aa18.1■□□□□ 0.49
LIG1-206ENST00000594067 SH2D3CQ8N5H7 860 aa18.1■□□□□ 0.49
LIG1-206ENST00000594067 GDF3Q9NR23 364 aa18.1■□□□□ 0.49
LIG1-206ENST00000594067 AIPL1Q9NZN9 384 aa18.1■□□□□ 0.49
LIG1-206ENST00000594067 HDAC9Q9UKV0 1011 aa18.1■□□□□ 0.49
LIG1-206ENST00000594067 PCDHGC5Q9Y5F6 944 aa18.1■□□□□ 0.49
LIG1-206ENST00000594067 GRID2IPA4D2P6 1211 aa18.09■□□□□ 0.49
LIG1-206ENST00000594067 FAM196BA6NMK8 535 aa18.09■□□□□ 0.49
LIG1-206ENST00000594067 A6NNZ2 444 aa18.09■□□□□ 0.49
LIG1-206ENST00000594067 KRT14P02533 472 aa18.09■□□□□ 0.49
LIG1-206ENST00000594067 PSMC6P62333 389 aa18.09■□□□□ 0.49
LIG1-206ENST00000594067 NFIAQ12857 509 aa18.09■□□□□ 0.49
LIG1-206ENST00000594067 NNTQ13423 1086 aa18.09■□□□□ 0.49
LIG1-206ENST00000594067 TUBB8Q3ZCM7 444 aa18.09■□□□□ 0.49
LIG1-206ENST00000594067 CDC42EP5Q6NZY7 148 aa18.09■□□□□ 0.49
LIG1-206ENST00000594067 CCDC43Q96MW1 224 aaKnown RBP18.09■□□□□ 0.49
LIG1-206ENST00000594067 SNAP25P60880 206 aa18.09■□□□□ 0.49
LIG1-206ENST00000594067 IRX3P78415 501 aaPredicted RBP18.09■□□□□ 0.49
LIG1-206ENST00000594067 DOK7Q18PE1 504 aa18.09■□□□□ 0.49
LIG1-206ENST00000594067 ZFPM1Q8IX07 1006 aa18.09■□□□□ 0.49
LIG1-206ENST00000594067 NAP1L4Q99733 375 aaKnown RBP18.09■□□□□ 0.49
LIG1-206ENST00000594067 POLD4Q9HCU8 107 aa18.09■□□□□ 0.49
LIG1-206ENST00000594067 TAF1LQ8IZX4 1826 aa18.09■□□□□ 0.49
LIG1-206ENST00000594067 HLA-DOAP06340 250 aa18.08■□□□□ 0.49
LIG1-206ENST00000594067 GUCY2FP51841 1108 aa18.08■□□□□ 0.49
LIG1-206ENST00000594067 PTK2Q05397 1052 aa18.08■□□□□ 0.49
LIG1-206ENST00000594067 PABPC4Q13310 644 aaKnown RBP eCLIP18.08■□□□□ 0.492e-6■■■■□ 26.1
LIG1-206ENST00000594067 TRADDQ15628 312 aa18.08■□□□□ 0.49
LIG1-206ENST00000594067 PTPROQ16827 1216 aa18.08■□□□□ 0.49
LIG1-206ENST00000594067 PRR16Q569H4 304 aa18.08■□□□□ 0.49
LIG1-206ENST00000594067 KCTD16Q68DU8 428 aa18.08■□□□□ 0.49
LIG1-206ENST00000594067 CATSPER3Q86XQ3 398 aa18.08■□□□□ 0.49
LIG1-206ENST00000594067 ZC3H3Q8IXZ2 948 aaKnown RBP18.08■□□□□ 0.49
LIG1-206ENST00000594067 P2RX7Q99572 595 aaKnown RBP18.08■□□□□ 0.49
LIG1-206ENST00000594067 GOLPH3Q9H4A6 298 aa18.08■□□□□ 0.49
LIG1-206ENST00000594067 FRMD3A2A2Y4 597 aa18.08■□□□□ 0.48
LIG1-206ENST00000594067 INPP5BP32019 993 aa18.08■□□□□ 0.48
LIG1-206ENST00000594067 USP11P51784 963 aa18.08■□□□□ 0.48
LIG1-206ENST00000594067 CDC37Q16543 378 aaPredicted RBP18.08■□□□□ 0.48
LIG1-206ENST00000594067 EDRF1Q3B7T1 1238 aa18.08■□□□□ 0.48
LIG1-206ENST00000594067 INPP4AQ96PE3 977 aaPredicted RBP18.08■□□□□ 0.48
LIG1-206ENST00000594067 COA1Q9GZY4 146 aa18.08■□□□□ 0.48
LIG1-206ENST00000594067 NDUFAB1O14561 156 aa18.07■□□□□ 0.48
LIG1-206ENST00000594067 PPEF1O14829 653 aaPredicted RBP18.07■□□□□ 0.48
LIG1-206ENST00000594067 HOXA10P31260 410 aaPredicted RBP18.07■□□□□ 0.48
LIG1-206ENST00000594067 DDR1Q08345 913 aa18.07■□□□□ 0.48
LIG1-206ENST00000594067 GIT2Q14161 759 aa18.07■□□□□ 0.48
LIG1-206ENST00000594067 SWT1Q5T5J6 900 aaKnown RBP18.07■□□□□ 0.48
LIG1-206ENST00000594067 FBXW10Q5XX13 1052 aa18.07■□□□□ 0.48
LIG1-206ENST00000594067 ZNF571Q7Z3V5 609 aaPredicted RBP18.07■□□□□ 0.48
LIG1-206ENST00000594067 SFR1Q86XK3 245 aa18.07■□□□□ 0.48
LIG1-206ENST00000594067 KLHL7Q8IXQ5 586 aa18.07■□□□□ 0.48
LIG1-206ENST00000594067 CASKIN2Q8WXE0 1202 aa18.07■□□□□ 0.48
LIG1-206ENST00000594067 ZNF233A6NK53 670 aa18.07■□□□□ 0.48
LIG1-206ENST00000594067 HNRNPH1P31943 449 aaKnown RBP18.07■□□□□ 0.48
LIG1-206ENST00000594067 ATP1A2P50993 1020 aa18.07■□□□□ 0.48
LIG1-206ENST00000594067 PAK2Q13177 524 aa18.07■□□□□ 0.48
LIG1-206ENST00000594067 MCTP2Q6DN12 878 aa18.07■□□□□ 0.48
LIG1-206ENST00000594067 IRF2BP2Q7Z5L9 587 aa18.07■□□□□ 0.48
LIG1-206ENST00000594067 SPAG5Q96R06 1193 aa18.07■□□□□ 0.48
LIG1-206ENST00000594067 CRAMP1Q96RY5 1269 aa18.07■□□□□ 0.48
LIG1-206ENST00000594067 BCAS3Q9H6U6 928 aa18.07■□□□□ 0.48
LIG1-206ENST00000594067 ARMCX3Q9UH62 379 aaPredicted RBP18.07■□□□□ 0.48
LIG1-206ENST00000594067 FOCADQ5VW36 1801 aa18.07■□□□□ 0.48
LIG1-206ENST00000594067 MYO3BQ8WXR4 1341 aa18.07■□□□□ 0.48
LIG1-206ENST00000594067 MYBP10242 640 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 EEF2P13639 858 aaKnown RBP18.06■□□□□ 0.48
LIG1-206ENST00000594067 ADRA2BP18089 450 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 CACNB3P54284 484 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 ARHGAP4P98171 946 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 CFAP58Q5T655 872 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 KCNV1Q6PIU1 500 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 PPP4R3CPQ6ZMV5 832 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 CEP89Q96ST8 783 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 REEP2Q9BRK0 252 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 DNAJC18Q9H819 358 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 USP21Q9UK80 565 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 PITPNM2Q9BZ72 1349 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 CYP3A7-CYP3A51PA0A087WV96 503 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 KCNK3O14649 394 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 MEIS2O14770 477 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 RAD51CO43502 376 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 UCHL3P15374 230 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 CYP3A7P24462 503 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 HOXD13P35453 343 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 SPIRE1Q08AE8 756 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 DCAF17Q5H9S7 520 aaPredicted RBP18.06■□□□□ 0.48
LIG1-206ENST00000594067 SLFN13Q68D06 897 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 DPY19L2P1Q6NXN4 242 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 B4GALNT4Q76KP1 1039 aa18.06■□□□□ 0.48
LIG1-206ENST00000594067 SLFN12Q8IYM2 578 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms