RNA–Protein interactions for RNA: ENST00000593912.5

VRK3-204, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 551 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-204ENST00000593912 ICA1Q05084 483 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 PDE4BQ07343 736 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 POLA2Q14181 598 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 HEATR6Q6AI08 1181 aaKnown RBP3.74□□□□□ -1.81
VRK3-204ENST00000593912 PCSK4Q6UW60 755 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 ATF7IPQ6VMQ6 1270 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 DHX30Q7L2E3 1194 aaKnown RBP eCLIP3.74□□□□□ -1.81
VRK3-204ENST00000593912 OTOP3Q7RTS5 596 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 C7orf31Q8N865 590 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 PIP4K2CQ8TBX8 421 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 AFG1LQ8WV93 481 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 LINC01599Q8WXQ3 324 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 BBXQ8WY36 941 aaPredicted RBP3.74□□□□□ -1.81
VRK3-204ENST00000593912 MYADMQ96S97 322 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 TCF25Q9BQ70 676 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 NOL10Q9BSC4 688 aaKnown RBP3.74□□□□□ -1.81
VRK3-204ENST00000593912 STK31Q9BXU1 1019 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 TRIM4Q9C037 500 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 VTA1Q9NP79 307 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 LTB4R2Q9NPC1 389 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 TMEM260Q9NX78 707 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 C9orf78Q9NZ63 289 aaPredicted RBP3.74□□□□□ -1.81
VRK3-204ENST00000593912 ANKMY1Q9P2S6 941 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 COG6Q9Y2V7 657 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 TMX2Q9Y320 296 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP3.74□□□□□ -1.81
VRK3-204ENST00000593912 ITPR2Q14571 2701 aa3.74□□□□□ -1.81
VRK3-204ENST00000593912 ASCC3Q8N3C0 2202 aaKnown RBP3.74□□□□□ -1.81
VRK3-204ENST00000593912 RAD50Q92878 1312 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 SHISA7A6NL88 538 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 EYA2O00167 538 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 ENPP3O14638 875 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 CLASP2O75122 1294 aaKnown RBP3.73□□□□□ -1.81
VRK3-204ENST00000593912 ZNF286BP0CG31 522 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 GHRP10912 638 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 GP1BBP13224 206 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 CEACAM1P13688 526 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 AKR1B1P15121 316 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 CA8P35219 290 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 PSEN2P49810 448 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 GPC5P78333 572 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 UBE3AQ05086 875 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 PPP2R5BQ15173 497 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 MLF2Q15773 248 aaPredicted RBP3.73□□□□□ -1.81
VRK3-204ENST00000593912 BRDTQ58F21 947 aaPredicted RBP3.73□□□□□ -1.81
VRK3-204ENST00000593912 SPOUT1Q5T280 376 aaKnown RBP3.73□□□□□ -1.81
VRK3-204ENST00000593912 RUFY4Q6ZNE9 571 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 CEP68Q76N32 757 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 CHST3Q7LGC8 479 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 DHX37Q8IY37 1157 aaKnown RBP3.73□□□□□ -1.81
VRK3-204ENST00000593912 THNSL1Q8IYQ7 743 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 CMTR2Q8IYT2 770 aaKnown RBP3.73□□□□□ -1.81
VRK3-204ENST00000593912 CHST13Q8NET6 341 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 ARID3AQ99856 593 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 SLF1Q9BQI6 1058 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 RPP25Q9BUL9 199 aaKnown RBP3.73□□□□□ -1.81
VRK3-204ENST00000593912 DDX23Q9BUQ8 820 aaKnown RBP3.73□□□□□ -1.81
VRK3-204ENST00000593912 FAM126AQ9BYI3 521 aaPredicted RBP3.73□□□□□ -1.81
VRK3-204ENST00000593912 SEMA4CQ9C0C4 833 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 EHD4Q9H223 541 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 ARHGEF10LQ9HCE6 1279 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 HMG20BQ9P0W2 317 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 DNMT3LQ9UJW3 386 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 MUC22E2RYF6 1773 aaPredicted RBP3.73□□□□□ -1.81
VRK3-204ENST00000593912 KIF26AQ9ULI4 1882 aaPredicted RBP3.73□□□□□ -1.81
VRK3-204ENST00000593912 PCNX2A6NKB5 2137 aa3.73□□□□□ -1.81
VRK3-204ENST00000593912 PDS5AQ29RF7 1337 aaKnown RBP3.72□□□□□ -1.81
VRK3-204ENST00000593912 CSMD1Q96PZ7 3565 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 A0A1B0GTL3 188 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 RBM47A0AV96 593 aaKnown RBP3.72□□□□□ -1.81
VRK3-204ENST00000593912 C2orf71A6NGG8 1288 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 SLC28A2O43868 658 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 KPNA6O60684 536 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 EPN2O95208 641 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 BAG3O95817 575 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 EEF2P13639 858 aaKnown RBP3.72□□□□□ -1.81
VRK3-204ENST00000593912 PLCG2P16885 1265 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 ITPKBP27987 946 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 PBX3P40426 434 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 USP5P45974 858 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 RFX5P48382 616 aaPredicted RBP3.72□□□□□ -1.81
VRK3-204ENST00000593912 NRLP54845 237 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 PPP4CP60510 307 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 TIMM10P62072 90 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 SIM1P81133 766 aaPredicted RBP3.72□□□□□ -1.81
VRK3-204ENST00000593912 ARHGAP4P98171 946 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 SATB1Q01826 763 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 GABPAQ06546 454 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 FZD5Q13467 585 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 MFSD10Q14728 455 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 NONOQ15233 471 aaKnown RBP eCLIP3.72□□□□□ -1.81
VRK3-204ENST00000593912 KIAA0753Q2KHM9 967 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 UAP1L1Q3KQV9 507 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 RABL6Q3YEC7 729 aaPredicted RBP3.72□□□□□ -1.81
VRK3-204ENST00000593912 C4orf17Q53FE4 359 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 MUM1L1Q5H9M0 696 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 PLA2G2CQ5R387 149 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 DAB2IPQ5VWQ8 1189 aa3.72□□□□□ -1.81
VRK3-204ENST00000593912 NAA16Q6N069 864 aaPredicted RBP3.72□□□□□ -1.81
VRK3-204ENST00000593912 TMEM179Q6ZVK1 233 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms