RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 AAASQ9NRG9 546 aa12.78□□□□□ -0.36
ZNF540-209ENST00000590588 GVINP1Q7Z2Y8 2422 aa12.78□□□□□ -0.36
ZNF540-209ENST00000590588 LMNAP02545 664 aaKnown RBP12.77□□□□□ -0.37
ZNF540-209ENST00000590588 GHRHRQ02643 423 aa12.77□□□□□ -0.37
ZNF540-209ENST00000590588 NEDD9Q14511 834 aa12.77□□□□□ -0.37
ZNF540-209ENST00000590588 ALX1Q15699 326 aa12.77□□□□□ -0.37
ZNF540-209ENST00000590588 QRICH1Q2TAL8 776 aa12.77□□□□□ -0.37
ZNF540-209ENST00000590588 SPOUT1Q5T280 376 aaKnown RBP12.77□□□□□ -0.37
ZNF540-209ENST00000590588 SYCE2Q6PIF2 218 aa12.77□□□□□ -0.37
ZNF540-209ENST00000590588 RTN4RL1Q86UN2 441 aaPredicted RBP12.77□□□□□ -0.37
ZNF540-209ENST00000590588 SAMD3Q8N6K7 520 aa12.77□□□□□ -0.37
ZNF540-209ENST00000590588 CNTNAP3BQ96NU0 1288 aa12.77□□□□□ -0.37
ZNF540-209ENST00000590588 NECTIN4Q96NY8 510 aa12.77□□□□□ -0.37
ZNF540-209ENST00000590588 APOL5Q9BWW9 433 aa12.77□□□□□ -0.37
ZNF540-209ENST00000590588 CNTNAP3Q9BZ76 1288 aa12.77□□□□□ -0.37
ZNF540-209ENST00000590588 ZFHX4Q86UP3 3567 aa12.77□□□□□ -0.37
ZNF540-209ENST00000590588 C2CD4DB7Z1M9 353 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 DHX16O60231 1041 aaKnown RBP12.76□□□□□ -0.37
ZNF540-209ENST00000590588 CCND2P30279 289 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 ERVFC1P60507 584 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 ANGPT1Q15389 498 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 GNPTABQ3T906 1256 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 VPS53Q5VIR6 699 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 CES5AQ6NT32 575 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 METTL7BQ6UX53 244 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 RUFY4Q6ZNE9 571 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 CYFIP1Q7L576 1253 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 DGKHQ86XP1 1220 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 KIAA2013Q8IYS2 634 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 LINC01599Q8WXQ3 324 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 GPKOWQ92917 476 aaPredicted RBP eCLIP12.76□□□□□ -0.37
ZNF540-209ENST00000590588 GPR20Q99678 358 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 BCAS3Q9H6U6 928 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 VAT1LQ9HCJ6 419 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 LRFN2Q9ULH4 789 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 SQORQ9Y6N5 450 aa12.76□□□□□ -0.37
ZNF540-209ENST00000590588 DMXL1Q9Y485 3027 aa12.75□□□□□ -0.37
ZNF540-209ENST00000590588 FGF18O76093 207 aa12.75□□□□□ -0.37
ZNF540-209ENST00000590588 FGAP02671 866 aa12.75□□□□□ -0.37
ZNF540-209ENST00000590588 RPLP2P05387 115 aaKnown RBP12.75□□□□□ -0.37
ZNF540-209ENST00000590588 PCP11498 1178 aaKnown RBP12.75□□□□□ -0.37
ZNF540-209ENST00000590588 CD52P31358 61 aa12.75□□□□□ -0.37
ZNF540-209ENST00000590588 TPRNQ4KMQ1 711 aa12.75□□□□□ -0.37
ZNF540-209ENST00000590588 UTP14CQ5TAP6 766 aaKnown RBP12.75□□□□□ -0.37
ZNF540-209ENST00000590588 MFSD6Q6ZSS7 791 aa12.75□□□□□ -0.37
ZNF540-209ENST00000590588 CCDC105Q8IYK2 499 aa12.75□□□□□ -0.37
ZNF540-209ENST00000590588 FLCNQ8NFG4 579 aa12.75□□□□□ -0.37
ZNF540-209ENST00000590588 DNAJB3Q8WWF6 145 aa12.75□□□□□ -0.37
ZNF540-209ENST00000590588 AMNQ9BXJ7 453 aa12.75□□□□□ -0.37
ZNF540-209ENST00000590588 AGO3Q9H9G7 860 aaKnown RBP12.75□□□□□ -0.37
ZNF540-209ENST00000590588 JMJD4Q9H9V9 463 aa12.75□□□□□ -0.37
ZNF540-209ENST00000590588 TMEM260Q9NX78 707 aa12.75□□□□□ -0.37
ZNF540-209ENST00000590588 CDY2AQ9Y6F7 541 aa12.75□□□□□ -0.37
ZNF540-209ENST00000590588 TTC41PQ6P2S7 1318 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 OPLAHO14841 1288 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 FSCN2O14926 492 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 STAM2O75886 525 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 ATXN8OSP0DMR3 200 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 SCG2P13521 617 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 AOC1P19801 751 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 ITIH3Q06033 890 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 ASPRV1Q53RT3 343 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 CCDC178Q5BJE1 867 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 IER5Q5VY09 327 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 LLGL2Q6P1M3 1020 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 TRIM50Q86XT4 487 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 THNSL1Q8IYQ7 743 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 ZDHHC14Q8IZN3 488 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 PLCD3Q8N3E9 789 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 PNMA1Q8ND90 353 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 CASP10Q92851 521 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 ZFP91Q96JP5 570 aaPredicted RBP12.74□□□□□ -0.37
ZNF540-209ENST00000590588 RTP3Q9BQQ7 232 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 ADAM7Q9H2U9 754 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 SMOC2Q9H3U7 446 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 POMKQ9H5K3 350 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 DLL3Q9NYJ7 618 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 LIMD1Q9UGP4 676 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 PUF60Q9UHX1 559 aaKnown RBP12.74□□□□□ -0.37
ZNF540-209ENST00000590588 PCDHB7Q9Y5E2 793 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 MYO10Q9HD67 2058 aa12.74□□□□□ -0.37
ZNF540-209ENST00000590588 SPATA31C2B4DYI2 1134 aa12.73□□□□□ -0.37
ZNF540-209ENST00000590588 PI15O43692 258 aa12.73□□□□□ -0.37
ZNF540-209ENST00000590588 ASGR2P07307 311 aa12.73□□□□□ -0.37
ZNF540-209ENST00000590588 HOXA13P31271 388 aaPredicted RBP12.73□□□□□ -0.37
ZNF540-209ENST00000590588 GATMP50440 423 aa12.73□□□□□ -0.37
ZNF540-209ENST00000590588 MRPS6P82932 125 aaKnown RBP12.73□□□□□ -0.37
ZNF540-209ENST00000590588 PLPP4Q5VZY2 271 aa12.73□□□□□ -0.37
ZNF540-209ENST00000590588 CWF19L1Q69YN2 538 aaKnown RBP12.73□□□□□ -0.37
ZNF540-209ENST00000590588 DTWD2Q8NBA8 298 aa12.73□□□□□ -0.37
ZNF540-209ENST00000590588 IL31RAQ8NI17 732 aa12.73□□□□□ -0.37
ZNF540-209ENST00000590588 ESR2Q92731 530 aa12.73□□□□□ -0.37
ZNF540-209ENST00000590588 ZKSCAN3Q9BRR0 538 aa12.73□□□□□ -0.37
ZNF540-209ENST00000590588 KAT14Q9H8E8 782 aa12.73□□□□□ -0.37
ZNF540-209ENST00000590588 NGRNQ9NPE2 291 aaKnown RBP12.73□□□□□ -0.37
ZNF540-209ENST00000590588 TUBE1Q9UJT0 475 aa12.73□□□□□ -0.37
ZNF540-209ENST00000590588 PADI3Q9ULW8 664 aa12.73□□□□□ -0.37
ZNF540-209ENST00000590588 LZTS1Q9Y250 596 aa12.73□□□□□ -0.37
ZNF540-209ENST00000590588 PCDHA1Q9Y5I3 950 aa12.73□□□□□ -0.37
ZNF540-209ENST00000590588 GCOM1H8Y6P7 765 aaPredicted RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms