RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 RNF26Q9BY78 433 aaPredicted RBP12.85□□□□□ -0.35
SMAD4-211ENST00000590499 ALDH8A1Q9H2A2 487 aaPredicted RBP12.85□□□□□ -0.35
SMAD4-211ENST00000590499 NCOA5Q9HCD5 579 aaKnown RBP12.85□□□□□ -0.35
SMAD4-211ENST00000590499 ATP13A2Q9NQ11 1180 aa12.85□□□□□ -0.35
SMAD4-211ENST00000590499 PDRG1Q9NUG6 133 aa12.85□□□□□ -0.35
SMAD4-211ENST00000590499 PCDHA6Q9UN73 950 aa12.85□□□□□ -0.35
SMAD4-211ENST00000590499 PCDHA8Q9Y5H6 950 aa12.85□□□□□ -0.35
SMAD4-211ENST00000590499 ESYT2A0FGR8 921 aa12.84□□□□□ -0.35
SMAD4-211ENST00000590499 SOX1O00570 391 aaPredicted RBP12.84□□□□□ -0.35
SMAD4-211ENST00000590499 TLR3O15455 904 aaKnown RBP12.84□□□□□ -0.35
SMAD4-211ENST00000590499 FIBPO43427 364 aa12.84□□□□□ -0.35
SMAD4-211ENST00000590499 B4GALT4O60513 344 aa12.84□□□□□ -0.35
SMAD4-211ENST00000590499 GGPS1O95749 300 aa12.84□□□□□ -0.35
SMAD4-211ENST00000590499 TIMP1P01033 207 aa12.84□□□□□ -0.35
SMAD4-211ENST00000590499 RAG1P15918 1043 aa12.84□□□□□ -0.35
SMAD4-211ENST00000590499 ITGB5P18084 799 aa12.84□□□□□ -0.35
SMAD4-211ENST00000590499 ADCY7P51828 1080 aa12.84□□□□□ -0.35
SMAD4-211ENST00000590499 CCT2P78371 535 aaKnown RBP12.84□□□□□ -0.35
SMAD4-211ENST00000590499 NBPF20Q3BBV1 942 aa12.84□□□□□ -0.35
SMAD4-211ENST00000590499 HSDL1Q3SXM5 330 aa12.84□□□□□ -0.35
SMAD4-211ENST00000590499 NFRKBQ6P4R8 1299 aa12.84□□□□□ -0.35
SMAD4-211ENST00000590499 DHX37Q8IY37 1157 aaKnown RBP12.84□□□□□ -0.35
SMAD4-211ENST00000590499 PHKBQ93100 1093 aa12.84□□□□□ -0.35
SMAD4-211ENST00000590499 TRPV6Q9H1D0 765 aa12.84□□□□□ -0.35
SMAD4-211ENST00000590499 BCAS3Q9H6U6 928 aa12.84□□□□□ -0.35
SMAD4-211ENST00000590499 RTEL1Q9NZ71 1219 aa12.84□□□□□ -0.35
SMAD4-211ENST00000590499 TRIP12Q14669 1992 aaPredicted RBP12.83□□□□□ -0.35
SMAD4-211ENST00000590499 SMCO2A6NFE2 343 aa12.83□□□□□ -0.36
SMAD4-211ENST00000590499 SPDYE3A6NKU9 549 aa12.83□□□□□ -0.36
SMAD4-211ENST00000590499 ADAMTS3O15072 1205 aa12.83□□□□□ -0.36
SMAD4-211ENST00000590499 HOXA2O43364 376 aa12.83□□□□□ -0.36
SMAD4-211ENST00000590499 EIF5BO60841 1220 aaKnown RBP12.83□□□□□ -0.36
SMAD4-211ENST00000590499 F2P00734 622 aa12.83□□□□□ -0.36
SMAD4-211ENST00000590499 EPHB4P54760 987 aa12.83□□□□□ -0.36
SMAD4-211ENST00000590499 DGKDQ16760 1214 aa12.83□□□□□ -0.36
SMAD4-211ENST00000590499 LRIT3Q3SXY7 679 aa12.83□□□□□ -0.36
SMAD4-211ENST00000590499 C8orf34Q49A92 452 aa12.83□□□□□ -0.36
SMAD4-211ENST00000590499 MSS51Q4VC12 460 aa12.83□□□□□ -0.36
SMAD4-211ENST00000590499 GPRASP2Q96D09 838 aa12.83□□□□□ -0.36
SMAD4-211ENST00000590499 SENP7Q9BQF6 1050 aa12.83□□□□□ -0.36
SMAD4-211ENST00000590499 ZMYND12Q9H0C1 365 aa12.83□□□□□ -0.36
SMAD4-211ENST00000590499 GLT8D2Q9H1C3 349 aa12.83□□□□□ -0.36
SMAD4-211ENST00000590499 TRMT13Q9NUP7 481 aaKnown RBP12.83□□□□□ -0.36
SMAD4-211ENST00000590499 UBIAD1Q9Y5Z9 338 aa12.83□□□□□ -0.36
SMAD4-211ENST00000590499 TANC1Q9C0D5 1861 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 CDH23Q9H251 3354 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 HAS3O00219 553 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 PPFIA4O75335 1185 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 FOSP01100 380 aaPredicted RBP12.82□□□□□ -0.36
SMAD4-211ENST00000590499 PTPN11Q06124 597 aaPredicted RBP12.82□□□□□ -0.36
SMAD4-211ENST00000590499 AP3B2Q13367 1082 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 NEDD9Q14511 834 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 C9orf50Q5SZB4 431 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 MFSD5Q6N075 450 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 METTL7BQ6UX53 244 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 SESTD1Q86VW0 696 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 PPP1R13LQ8WUF5 828 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 CRYGNQ8WXF5 182 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 PGBD1Q96JS3 809 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 SPATA33Q96N06 139 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 CTAGE1Q96RT6 745 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 NOC4LQ9BVI4 516 aaKnown RBP12.82□□□□□ -0.36
SMAD4-211ENST00000590499 SLC26A6Q9BXS9 759 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 ANO3Q9BYT9 981 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 TMEM260Q9NX78 707 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 TPCN1Q9ULQ1 816 aa12.82□□□□□ -0.36
SMAD4-211ENST00000590499 SORBS3O60504 671 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 ATP9AO75110 1047 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 PPFIA3O75145 1194 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 ZNF286BP0CG31 522 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 KCNA2P16389 499 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 SSTR3P32745 418 aaPredicted RBP12.81□□□□□ -0.36
SMAD4-211ENST00000590499 CYP2C18P33260 490 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 SREBF1P36956 1147 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 FPGSQ05932 587 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 SHHQ15465 462 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 NLRX1Q86UT6 975 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 C16orf70Q9BSU1 422 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 HIPK3Q9H422 1215 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 EHMT1Q9H9B1 1298 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 MLXIPQ9HAP2 919 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 JADE2Q9NQC1 790 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 TELO2Q9Y4R8 837 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 UMODL1Q5DID0 1318 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 SCN5AQ14524 2016 aa12.81□□□□□ -0.36
SMAD4-211ENST00000590499 PFKFB2O60825 505 aa12.8□□□□□ -0.36
SMAD4-211ENST00000590499 AK2P54819 239 aa12.8□□□□□ -0.36
SMAD4-211ENST00000590499 AKAP17AQ02040 695 aaKnown RBP12.8□□□□□ -0.36
SMAD4-211ENST00000590499 SCRN1Q12765 414 aa12.8□□□□□ -0.36
SMAD4-211ENST00000590499 STK3Q13188 491 aa12.8□□□□□ -0.36
SMAD4-211ENST00000590499 FAM47CQ5HY64 1035 aa12.8□□□□□ -0.36
SMAD4-211ENST00000590499 C16orf59Q7L2K0 433 aa12.8□□□□□ -0.36
SMAD4-211ENST00000590499 CYFIP1Q7L576 1253 aa12.8□□□□□ -0.36
SMAD4-211ENST00000590499 CYP2W1Q8TAV3 490 aa12.8□□□□□ -0.36
SMAD4-211ENST00000590499 CCDC12Q8WUD4 166 aaPredicted RBP12.8□□□□□ -0.36
SMAD4-211ENST00000590499 CDHR1Q96JP9 859 aa12.8□□□□□ -0.36
SMAD4-211ENST00000590499 GPR20Q99678 358 aa12.8□□□□□ -0.36
SMAD4-211ENST00000590499 MXRA8Q9BRK3 442 aa12.8□□□□□ -0.36
SMAD4-211ENST00000590499 KATNAL1Q9BW62 490 aa12.8□□□□□ -0.36
SMAD4-211ENST00000590499 PPP1R12CQ9BZL4 782 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms