RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 FOSBP53539 338 aa12.31□□□□□ -0.44
CLIP3-203ENST00000586457 IKBKEQ14164 716 aa12.31□□□□□ -0.44
CLIP3-203ENST00000586457 RAB30Q15771 203 aa12.31□□□□□ -0.44
CLIP3-203ENST00000586457 INF2Q27J81 1249 aa12.31□□□□□ -0.44
CLIP3-203ENST00000586457 ZNF618Q5T7W0 954 aa12.31□□□□□ -0.44
CLIP3-203ENST00000586457 LRCH2Q5VUJ6 765 aa12.31□□□□□ -0.44
CLIP3-203ENST00000586457 TAF2Q6P1X5 1199 aa12.31□□□□□ -0.44
CLIP3-203ENST00000586457 POTEBQ6S5H4 581 aa12.31□□□□□ -0.44
CLIP3-203ENST00000586457 PIK3AP1Q6ZUJ8 805 aa12.31□□□□□ -0.44
CLIP3-203ENST00000586457 TRMT1LQ7Z2T5 733 aaKnown RBP12.31□□□□□ -0.44
CLIP3-203ENST00000586457 CCDC83Q8IWF9 413 aa12.31□□□□□ -0.44
CLIP3-203ENST00000586457 LLPHQ9BRT6 129 aaKnown RBP12.31□□□□□ -0.44
CLIP3-203ENST00000586457 NRBP2Q9NSY0 501 aa12.31□□□□□ -0.44
CLIP3-203ENST00000586457 DDX25Q9UHL0 483 aaKnown RBP12.31□□□□□ -0.44
CLIP3-203ENST00000586457 TUBE1Q9UJT0 475 aa12.31□□□□□ -0.44
CLIP3-203ENST00000586457 KIF3AQ9Y496 699 aa12.31□□□□□ -0.44
CLIP3-203ENST00000586457 CHMP2AO43633 222 aa12.3□□□□□ -0.44
CLIP3-203ENST00000586457 EFCAB14O75071 495 aa12.3□□□□□ -0.44
CLIP3-203ENST00000586457 LGR5O75473 907 aa12.3□□□□□ -0.44
CLIP3-203ENST00000586457 BAIAP3O94812 1187 aa12.3□□□□□ -0.44
CLIP3-203ENST00000586457 CTDNEP1O95476 244 aa12.3□□□□□ -0.44
CLIP3-203ENST00000586457 CTSHP09668 335 aa12.3□□□□□ -0.44
CLIP3-203ENST00000586457 INSRRP14616 1297 aa12.3□□□□□ -0.44
CLIP3-203ENST00000586457 ATP2A2P16615 1042 aaKnown RBP12.3□□□□□ -0.44
CLIP3-203ENST00000586457 SFNP31947 248 aa12.3□□□□□ -0.44
CLIP3-203ENST00000586457 RBM25P49756 843 aaKnown RBP12.3□□□□□ -0.44
CLIP3-203ENST00000586457 HMGN5P82970 282 aaKnown RBP12.3□□□□□ -0.44
CLIP3-203ENST00000586457 Q4G0T1 1027 aa12.3□□□□□ -0.44
CLIP3-203ENST00000586457 IER5Q5VY09 327 aa12.3□□□□□ -0.44
CLIP3-203ENST00000586457 NEK8Q86SG6 692 aa12.3□□□□□ -0.44
CLIP3-203ENST00000586457 NSUN7Q8NE18 718 aaKnown RBP12.3□□□□□ -0.44
CLIP3-203ENST00000586457 LMBR1Q8WVP7 490 aa12.3□□□□□ -0.44
CLIP3-203ENST00000586457 CRYGNQ8WXF5 182 aa12.3□□□□□ -0.44
CLIP3-203ENST00000586457 FAM161BQ96MY7 647 aa12.3□□□□□ -0.44
CLIP3-203ENST00000586457 RIT2Q99578 217 aa12.3□□□□□ -0.44
CLIP3-203ENST00000586457 TELO2Q9Y4R8 837 aa12.3□□□□□ -0.44
CLIP3-203ENST00000586457 ADAMTS3O15072 1205 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 MSH4O15457 936 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 HBP1O60381 514 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 DTNBO60941 627 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 ATG7O95352 703 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 LARGE1O95461 756 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 GCFC2P16383 781 aaKnown RBP12.29□□□□□ -0.44
CLIP3-203ENST00000586457 JAK3P52333 1124 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 FAM109BQ6ICB4 259 aaPredicted RBP12.29□□□□□ -0.44
CLIP3-203ENST00000586457 CNKSR3Q6P9H4 555 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 MOXD1Q6UVY6 613 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 ABHD15Q6UXT9 468 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 Q7L0L9 218 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 MIER3Q7Z3K6 550 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 SEPT8Q92599 483 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 TIFAQ96CG3 184 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 C8orf76Q96K31 380 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 FAM49AQ9H0Q0 323 aaPredicted RBP12.29□□□□□ -0.44
CLIP3-203ENST00000586457 SLC28A3Q9HAS3 691 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 DISC1Q9NRI5 854 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 GABBR1Q9UBS5 961 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 CEP131Q9UPN4 1083 aa12.29□□□□□ -0.44
CLIP3-203ENST00000586457 DOCK5Q9H7D0 1870 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 CYP3A7-CYP3A51PA0A087WV96 503 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 ABHD14A-ACY1A0A1B0GW23 586 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 DHX15O43143 795 aaKnown RBP12.28□□□□□ -0.44
CLIP3-203ENST00000586457 JAK2O60674 1132 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 TDP2O95551 362 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 CCNE2O96020 404 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 MMP1P03956 469 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 CYP3A7P24462 503 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 DNAJB2P25686 324 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 MCM2P49736 904 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 RBL2Q08999 1139 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 PLCB4Q15147 1175 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 ZNF484Q5JVG2 852 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 PHOSPHO2Q8TCD6 241 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 ATP8B4Q8TF62 1192 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 DNAJB3Q8WWF6 145 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 BBXQ8WY36 941 aaPredicted RBP12.28□□□□□ -0.44
CLIP3-203ENST00000586457 DHX38Q92620 1227 aaKnown RBP12.28□□□□□ -0.44
CLIP3-203ENST00000586457 FAM167AQ96KS9 214 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 SLC9A7Q96T83 725 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 GJB4Q9NTQ9 266 aa12.28□□□□□ -0.44
CLIP3-203ENST00000586457 CXXC1Q9P0U4 656 aaPredicted RBP12.28□□□□□ -0.44
CLIP3-203ENST00000586457 TMEM265A0A087WTH1 108 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 GRXCR1A8MXD5 290 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 M0R2N6 131 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 DKC1O60832 514 aaKnown RBP eCLIP12.27□□□□□ -0.45
CLIP3-203ENST00000586457 AMHP03971 560 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 FDPSP14324 419 aaKnown RBP12.27□□□□□ -0.45
CLIP3-203ENST00000586457 KLRC1P26715 233 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 TMOD1P28289 359 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 GUCY1B3Q02153 619 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 HIC1Q14526 733 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 KRT40Q6A162 431 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 PPP4R3AQ6IN85 833 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 CCDC60Q8IWA6 550 aaPredicted RBP12.27□□□□□ -0.45
CLIP3-203ENST00000586457 DIS3L2Q8IYB7 885 aaKnown RBP12.27□□□□□ -0.45
CLIP3-203ENST00000586457 SLFN12Q8IYM2 578 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 NME8Q8N427 588 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 METTL13Q8N6R0 699 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 RDM1Q8NG50 284 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 OXER1Q8TDS5 423 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms