RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 POTEFA5A3E0 1075 aa18.07■□□□□ 0.48
SS18-226ENST00000585241 ADCY6O43306 1168 aa18.07■□□□□ 0.48
SS18-226ENST00000585241 HOXD8P13378 290 aaPredicted RBP18.07■□□□□ 0.48
SS18-226ENST00000585241 QARSP47897 775 aaKnown RBP18.07■□□□□ 0.48
SS18-226ENST00000585241 PSMC5P62195 406 aa18.07■□□□□ 0.48
SS18-226ENST00000585241 MDM2Q00987 491 aaPredicted RBP18.07■□□□□ 0.48
SS18-226ENST00000585241 MAP3K21Q5TCX8 1036 aa18.07■□□□□ 0.48
SS18-226ENST00000585241 POTEGQ6S5H5 508 aa18.07■□□□□ 0.48
SS18-226ENST00000585241 C4orf19Q8IY42 314 aa18.07■□□□□ 0.48
SS18-226ENST00000585241 CEP57L1Q8IYX8 460 aa18.07■□□□□ 0.48
SS18-226ENST00000585241 TRPV1Q8NER1 839 aa18.07■□□□□ 0.48
SS18-226ENST00000585241 SEPT1Q8WYJ6 367 aa18.07■□□□□ 0.48
SS18-226ENST00000585241 ZSWIM4Q9H7M6 989 aa18.07■□□□□ 0.48
SS18-226ENST00000585241 WRAP73Q9P2S5 460 aaPredicted RBP18.07■□□□□ 0.48
SS18-226ENST00000585241 KIAA1024Q9UPX6 916 aa18.07■□□□□ 0.48
SS18-226ENST00000585241 Q9Y3F1 56 aa18.07■□□□□ 0.48
SS18-226ENST00000585241 SAMM50Q9Y512 469 aa18.07■□□□□ 0.48
SS18-226ENST00000585241 ADCY3O60266 1144 aa18.06■□□□□ 0.48
SS18-226ENST00000585241 DKC1O60832 514 aaKnown RBP eCLIP18.06■□□□□ 0.48
SS18-226ENST00000585241 LGR5O75473 907 aa18.06■□□□□ 0.48
SS18-226ENST00000585241 HMGCRP04035 888 aa18.06■□□□□ 0.48
SS18-226ENST00000585241 AKR1A1P14550 325 aa18.06■□□□□ 0.48
SS18-226ENST00000585241 CYP4A11Q02928 519 aa18.06■□□□□ 0.48
SS18-226ENST00000585241 TNFAIP2Q03169 654 aa18.06■□□□□ 0.48
SS18-226ENST00000585241 CTTNQ14247 550 aaKnown RBP18.06■□□□□ 0.48
SS18-226ENST00000585241 HSDL1Q3SXM5 330 aa18.06■□□□□ 0.48
SS18-226ENST00000585241 CCDC60Q8IWA6 550 aaPredicted RBP18.06■□□□□ 0.48
SS18-226ENST00000585241 PPTC7Q8NI37 304 aa18.06■□□□□ 0.48
SS18-226ENST00000585241 RAET1EQ8TD07 263 aa18.06■□□□□ 0.48
SS18-226ENST00000585241 AFAP1L1Q8TED9 768 aa18.06■□□□□ 0.48
SS18-226ENST00000585241 LARP4BQ92615 738 aaKnown RBP18.06■□□□□ 0.48
SS18-226ENST00000585241 CCDC34Q96HJ3 373 aa18.06■□□□□ 0.48
SS18-226ENST00000585241 SPATA33Q96N06 139 aa18.06■□□□□ 0.48
SS18-226ENST00000585241 PLIN2Q99541 437 aa18.06■□□□□ 0.48
SS18-226ENST00000585241 MTRQ99707 1265 aa18.06■□□□□ 0.48
SS18-226ENST00000585241 TNMDQ9H2S6 317 aa18.06■□□□□ 0.48
SS18-226ENST00000585241 FAM184BQ9ULE4 1060 aa18.06■□□□□ 0.48
SS18-226ENST00000585241 MAFBQ9Y5Q3 323 aaPredicted RBP18.06■□□□□ 0.48
SS18-226ENST00000585241 EMSYQ7Z589 1322 aa18.05■□□□□ 0.48
SS18-226ENST00000585241 MYL1P05976 194 aa18.05■□□□□ 0.48
SS18-226ENST00000585241 XRCC6P12956 609 aaKnown RBP eCLIP18.05■□□□□ 0.48
SS18-226ENST00000585241 CACNB2Q08289 660 aaPredicted RBP18.05■□□□□ 0.48
SS18-226ENST00000585241 ZRSR1Q15695 479 aaKnown RBP18.05■□□□□ 0.48
SS18-226ENST00000585241 UGCGQ16739 394 aa18.05■□□□□ 0.48
SS18-226ENST00000585241 GJC2Q5T442 439 aaPredicted RBP18.05■□□□□ 0.48
SS18-226ENST00000585241 TPH2Q8IWU9 490 aa18.05■□□□□ 0.48
SS18-226ENST00000585241 SLAIN1Q8ND83 568 aa18.05■□□□□ 0.48
SS18-226ENST00000585241 BANK1Q8NDB2 785 aa18.05■□□□□ 0.48
SS18-226ENST00000585241 ATP6V0A1Q93050 837 aa18.05■□□□□ 0.48
SS18-226ENST00000585241 PAGE5Q96GU1 130 aa18.05■□□□□ 0.48
SS18-226ENST00000585241 NACC1Q96RE7 527 aa18.05■□□□□ 0.48
SS18-226ENST00000585241 PCYT2Q99447 389 aa18.05■□□□□ 0.48
SS18-226ENST00000585241 LOXHD1Q8IVV2 1947 aa18.05■□□□□ 0.48
SS18-226ENST00000585241 SORBS3O60504 671 aa18.04■□□□□ 0.48
SS18-226ENST00000585241 STBD1O95210 358 aa18.04■□□□□ 0.48
SS18-226ENST00000585241 EYA4O95677 639 aa18.04■□□□□ 0.48
SS18-226ENST00000585241 ELNP15502 786 aa18.04■□□□□ 0.48
SS18-226ENST00000585241 TCF7P36402 384 aaPredicted RBP18.04■□□□□ 0.48
SS18-226ENST00000585241 NKX3-2P78367 333 aa18.04■□□□□ 0.48
SS18-226ENST00000585241 SP4Q02446 784 aa18.04■□□□□ 0.48
SS18-226ENST00000585241 TRIM32Q13049 653 aa18.04■□□□□ 0.48
SS18-226ENST00000585241 POSTNQ15063 836 aa18.04■□□□□ 0.48
SS18-226ENST00000585241 CNNM4Q6P4Q7 775 aa18.04■□□□□ 0.48
SS18-226ENST00000585241 GABBR1Q9UBS5 961 aa18.04■□□□□ 0.48
SS18-226ENST00000585241 HOOK1Q9UJC3 728 aaKnown RBP18.04■□□□□ 0.48
SS18-226ENST00000585241 DBR1Q9UK59 544 aaKnown RBP18.04■□□□□ 0.48
SS18-226ENST00000585241 DNM3Q9UQ16 869 aa18.04■□□□□ 0.48
SS18-226ENST00000585241 TRIM17Q9Y577 477 aa18.04■□□□□ 0.48
SS18-226ENST00000585241 E9PMD0 336 aa18.03■□□□□ 0.48
SS18-226ENST00000585241 NOP56O00567 594 aaKnown RBP18.03■□□□□ 0.48
SS18-226ENST00000585241 FOXN1O15353 648 aa18.03■□□□□ 0.48
SS18-226ENST00000585241 SEPT4O43236 478 aa18.03■□□□□ 0.48
SS18-226ENST00000585241 GTPBP6O43824 516 aaPredicted RBP18.03■□□□□ 0.48
SS18-226ENST00000585241 ZNF862O60290 1169 aa18.03■□□□□ 0.48
SS18-226ENST00000585241 LETM1O95202 739 aaPredicted RBP18.03■□□□□ 0.48
SS18-226ENST00000585241 HSPA8P11142 646 aaKnown RBP18.03■□□□□ 0.48
SS18-226ENST00000585241 PTGS1P23219 599 aa18.03■□□□□ 0.48
SS18-226ENST00000585241 SLC12A3P55017 1021 aa18.03■□□□□ 0.48
SS18-226ENST00000585241 PSMC6P62333 389 aa18.03■□□□□ 0.48
SS18-226ENST00000585241 CAMK4Q16566 473 aa18.03■□□□□ 0.48
SS18-226ENST00000585241 ZSCAN23Q3MJ62 389 aa18.03■□□□□ 0.48
SS18-226ENST00000585241 FAM160B1Q5W0V3 765 aa18.03■□□□□ 0.48
SS18-226ENST00000585241 SWSAP1Q6NVH7 229 aa18.03■□□□□ 0.48
SS18-226ENST00000585241 SYT2Q8N9I0 419 aaPredicted RBP18.03■□□□□ 0.48
SS18-226ENST00000585241 OR6J1Q8NGC5 347 aa18.03■□□□□ 0.48
SS18-226ENST00000585241 SPATA20Q8TB22 786 aa18.03■□□□□ 0.48
SS18-226ENST00000585241 ZNF302Q9NR11 478 aa18.03■□□□□ 0.48
SS18-226ENST00000585241 TUBE1Q9UJT0 475 aa18.03■□□□□ 0.48
SS18-226ENST00000585241 A6NJR5 290 aa18.02■□□□□ 0.48
SS18-226ENST00000585241 DUSP11O75319 330 aaKnown RBP18.02■□□□□ 0.48
SS18-226ENST00000585241 PLA2G4BP0C869 781 aa18.02■□□□□ 0.48
SS18-226ENST00000585241 PRKAR2AP13861 404 aaKnown RBP18.02■□□□□ 0.48
SS18-226ENST00000585241 DPYDQ12882 1025 aa18.02■□□□□ 0.48
SS18-226ENST00000585241 MCM6Q14566 821 aa18.02■□□□□ 0.48
SS18-226ENST00000585241 NT5DC1Q5TFE4 455 aa18.02■□□□□ 0.48
SS18-226ENST00000585241 SV2BQ7L1I2 683 aa18.02■□□□□ 0.48
SS18-226ENST00000585241 PLPPR4Q7Z2D5 763 aa18.02■□□□□ 0.48
SS18-226ENST00000585241 TLK2Q86UE8 772 aa18.02■□□□□ 0.48
SS18-226ENST00000585241 GRAMD1CQ8IYS0 662 aa18.02■□□□□ 0.48
SS18-226ENST00000585241 AFG1LQ8WV93 481 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms