RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 HLA-CQ95604 372 aa23.38■■□□□ 1.33
SHMT1-209ENST00000582653 hCG_1984214I3L0E3 225 aa23.37■■□□□ 1.33
SHMT1-209ENST00000582653 CLK2P49760 499 aaKnown RBP23.37■■□□□ 1.33
SHMT1-209ENST00000582653 PPFIA1Q13136 1202 aa23.37■■□□□ 1.33
SHMT1-209ENST00000582653 ZNF713Q8N859 430 aaPredicted RBP23.37■■□□□ 1.33
SHMT1-209ENST00000582653 GDPD5Q8WTR4 605 aa23.37■■□□□ 1.33
SHMT1-209ENST00000582653 IFIH1Q9BYX4 1025 aaKnown RBP23.37■■□□□ 1.33
SHMT1-209ENST00000582653 CCDC196A0A1B0GTZ2 297 aa23.36■■□□□ 1.33
SHMT1-209ENST00000582653 MBLAC1A4D2B0 266 aaPredicted RBP23.36■■□□□ 1.33
SHMT1-209ENST00000582653 SCG2P13521 617 aa23.36■■□□□ 1.33
SHMT1-209ENST00000582653 KCNQ1P51787 676 aa23.36■■□□□ 1.33
SHMT1-209ENST00000582653 GRIK4Q16099 956 aa23.36■■□□□ 1.33
SHMT1-209ENST00000582653 MARCH8Q5T0T0 291 aa23.36■■□□□ 1.33
SHMT1-209ENST00000582653 JAKMIP3Q5VZ66 844 aa23.36■■□□□ 1.33
SHMT1-209ENST00000582653 RUFY4Q6ZNE9 571 aa23.36■■□□□ 1.33
SHMT1-209ENST00000582653 RSPH3Q86UC2 560 aa23.36■■□□□ 1.33
SHMT1-209ENST00000582653 PHKBQ93100 1093 aa23.36■■□□□ 1.33
SHMT1-209ENST00000582653 PCYT2Q99447 389 aa23.36■■□□□ 1.33
SHMT1-209ENST00000582653 AGXT2Q9BYV1 514 aa23.36■■□□□ 1.33
SHMT1-209ENST00000582653 GLT8D2Q9H1C3 349 aa23.36■■□□□ 1.33
SHMT1-209ENST00000582653 JPH1Q9HDC5 661 aaPredicted RBP23.36■■□□□ 1.33
SHMT1-209ENST00000582653 SLC9A2Q9UBY0 812 aa23.36■■□□□ 1.33
SHMT1-209ENST00000582653 RRN3P2A6NIE6 340 aa23.35■■□□□ 1.33
SHMT1-209ENST00000582653 UPP2O95045 317 aa23.35■■□□□ 1.33
SHMT1-209ENST00000582653 PSMA5P28066 241 aa23.35■■□□□ 1.33
SHMT1-209ENST00000582653 SREBF1P36956 1147 aa23.35■■□□□ 1.33
SHMT1-209ENST00000582653 PKN1Q16512 942 aa23.35■■□□□ 1.33
SHMT1-209ENST00000582653 CEP55Q53EZ4 464 aa23.35■■□□□ 1.33
SHMT1-209ENST00000582653 FBXL16Q8N461 479 aa23.35■■□□□ 1.33
SHMT1-209ENST00000582653 TNPO1Q92973 898 aaKnown RBP23.35■■□□□ 1.33
SHMT1-209ENST00000582653 SAMD11Q96NU1 681 aa23.35■■□□□ 1.33
SHMT1-209ENST00000582653 C17orf80Q9BSJ5 609 aa23.35■■□□□ 1.33
SHMT1-209ENST00000582653 NFASCO94856 1347 aa23.34■■□□□ 1.33
SHMT1-209ENST00000582653 NEFLP07196 543 aa23.34■■□□□ 1.33
SHMT1-209ENST00000582653 MGAT3Q09327 533 aa23.34■■□□□ 1.33
SHMT1-209ENST00000582653 ITGB3BPQ13352 177 aaPredicted RBP23.34■■□□□ 1.33
SHMT1-209ENST00000582653 AP3B2Q13367 1082 aa23.34■■□□□ 1.33
SHMT1-209ENST00000582653 FBXO22Q8NEZ5 403 aa23.34■■□□□ 1.33
SHMT1-209ENST00000582653 DNAJB3Q8WWF6 145 aa23.34■■□□□ 1.33
SHMT1-209ENST00000582653 ZBTB10Q96DT7 871 aa23.34■■□□□ 1.33
SHMT1-209ENST00000582653 YME1L1Q96TA2 773 aa23.34■■□□□ 1.33
SHMT1-209ENST00000582653 AGO4Q9HCK5 861 aaKnown RBP23.34■■□□□ 1.33
SHMT1-209ENST00000582653 TUBE1Q9UJT0 475 aa23.34■■□□□ 1.33
SHMT1-209ENST00000582653 MEIS1O00470 390 aa23.33■■□□□ 1.33
SHMT1-209ENST00000582653 PRPF3O43395 683 aaKnown RBP23.33■■□□□ 1.33
SHMT1-209ENST00000582653 RPLP2P05387 115 aaKnown RBP23.33■■□□□ 1.33
SHMT1-209ENST00000582653 INSRRP14616 1297 aa23.33■■□□□ 1.33
SHMT1-209ENST00000582653 ZNF76P36508 570 aa23.33■■□□□ 1.33
SHMT1-209ENST00000582653 ACTR2P61160 394 aa23.33■■□□□ 1.33
SHMT1-209ENST00000582653 CCT2P78371 535 aaKnown RBP23.33■■□□□ 1.33
SHMT1-209ENST00000582653 PLPPR4Q7Z2D5 763 aa23.33■■□□□ 1.33
SHMT1-209ENST00000582653 UIMC1Q96RL1 719 aa23.33■■□□□ 1.33
SHMT1-209ENST00000582653 SDF4Q9BRK5 362 aa23.33■■□□□ 1.33
SHMT1-209ENST00000582653 AZI2Q9H6S1 392 aa23.33■■□□□ 1.33
SHMT1-209ENST00000582653 NCOA5Q9HCD5 579 aaKnown RBP23.33■■□□□ 1.33
SHMT1-209ENST00000582653 MICAL3Q7RTP6 2002 aa23.33■■□□□ 1.32
SHMT1-209ENST00000582653 KAT6AQ92794 2004 aa23.33■■□□□ 1.32
SHMT1-209ENST00000582653 NID2Q14112 1375 aa23.32■■□□□ 1.32
SHMT1-209ENST00000582653 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP23.32■■□□□ 1.32
SHMT1-209ENST00000582653 ENPP3O14638 875 aa23.32■■□□□ 1.32
SHMT1-209ENST00000582653 ATG7O95352 703 aa23.32■■□□□ 1.32
SHMT1-209ENST00000582653 PDIA3P30101 505 aaKnown RBP23.32■■□□□ 1.32
SHMT1-209ENST00000582653 IGBP1P78318 339 aa23.32■■□□□ 1.32
SHMT1-209ENST00000582653 NTRK3Q16288 839 aa23.32■■□□□ 1.32
SHMT1-209ENST00000582653 EPC2Q52LR7 807 aa23.32■■□□□ 1.32
SHMT1-209ENST00000582653 RUFY3Q7L099 469 aa23.32■■□□□ 1.32
SHMT1-209ENST00000582653 ZMYND12Q9H0C1 365 aa23.32■■□□□ 1.32
SHMT1-209ENST00000582653 FAM86B1E9PN63 330 aa23.31■■□□□ 1.32
SHMT1-209ENST00000582653 DDX39AO00148 427 aaKnown RBP23.31■■□□□ 1.32
SHMT1-209ENST00000582653 FAM86B2P0C5J1 330 aa23.31■■□□□ 1.32
SHMT1-209ENST00000582653 GHRP10912 638 aa23.31■■□□□ 1.32
SHMT1-209ENST00000582653 STAT5BP51692 787 aa23.31■■□□□ 1.32
SHMT1-209ENST00000582653 TOB2Q14106 344 aaPredicted RBP23.31■■□□□ 1.32
SHMT1-209ENST00000582653 LPIN1Q14693 890 aa23.31■■□□□ 1.32
SHMT1-209ENST00000582653 IL17RAQ96F46 866 aa23.31■■□□□ 1.32
SHMT1-209ENST00000582653 NECAB3Q96P71 396 aaPredicted RBP23.31■■□□□ 1.32
SHMT1-209ENST00000582653 LARP6Q9BRS8 491 aaKnown RBP23.31■■□□□ 1.32
SHMT1-209ENST00000582653 SLC26A6Q9BXS9 759 aa23.31■■□□□ 1.32
SHMT1-209ENST00000582653 ZSWIM6Q9HCJ5 1215 aa23.31■■□□□ 1.32
SHMT1-209ENST00000582653 C6orf50Q9HD87 102 aa23.31■■□□□ 1.32
SHMT1-209ENST00000582653 SQORQ9Y6N5 450 aa23.31■■□□□ 1.32
SHMT1-209ENST00000582653 TCF20Q9UGU0 1960 aaKnown RBP23.31■■□□□ 1.32
SHMT1-209ENST00000582653 ESYT2A0FGR8 921 aa23.3■■□□□ 1.32
SHMT1-209ENST00000582653 H3BNC9 293 aa23.3■■□□□ 1.32
SHMT1-209ENST00000582653 AKAP17AQ02040 695 aaKnown RBP23.3■■□□□ 1.32
SHMT1-209ENST00000582653 FBXO47Q5MNV8 452 aa23.3■■□□□ 1.32
SHMT1-209ENST00000582653 IER5Q5VY09 327 aa23.3■■□□□ 1.32
SHMT1-209ENST00000582653 NIPA1Q7RTP0 329 aa23.3■■□□□ 1.32
SHMT1-209ENST00000582653 PLA2G4DQ86XP0 818 aa23.3■■□□□ 1.32
SHMT1-209ENST00000582653 TMEM192Q8IY95 271 aa23.3■■□□□ 1.32
SHMT1-209ENST00000582653 CRYGNQ8WXF5 182 aa23.3■■□□□ 1.32
SHMT1-209ENST00000582653 CDY2AQ9Y6F7 541 aa23.3■■□□□ 1.32
SHMT1-209ENST00000582653 CCNE2O96020 404 aa23.29■■□□□ 1.32
SHMT1-209ENST00000582653 EVCP57679 992 aa23.29■■□□□ 1.32
SHMT1-209ENST00000582653 PLCB4Q15147 1175 aa23.29■■□□□ 1.32
SHMT1-209ENST00000582653 PTPROQ16827 1216 aa23.29■■□□□ 1.32
SHMT1-209ENST00000582653 RASGRP4Q8TDF6 673 aa23.29■■□□□ 1.32
SHMT1-209ENST00000582653 TRAPPC12Q8WVT3 735 aa23.29■■□□□ 1.32
SHMT1-209ENST00000582653 MRPL38Q96DV4 380 aaKnown RBP23.29■■□□□ 1.32
SHMT1-209ENST00000582653 TRPC6Q9Y210 931 aa23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms