RNA–Protein interactions for RNA: ENST00000579716.2

COPS3-216, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 419 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-216ENST00000579716 PRPF4BQ13523 1007 aaKnown RBP7.38□□□□□ -1.23
COPS3-216ENST00000579716 SAFBQ15424 915 aaKnown RBP eCLIP7.38□□□□□ -1.23
COPS3-216ENST00000579716 SYCP1Q15431 976 aa7.38□□□□□ -1.23
COPS3-216ENST00000579716 NKPD1Q17RQ9 610 aa7.38□□□□□ -1.23
COPS3-216ENST00000579716 FAM180BQ6P0A1 224 aa7.38□□□□□ -1.23
COPS3-216ENST00000579716 OTOP3Q7RTS5 596 aa7.38□□□□□ -1.23
COPS3-216ENST00000579716 MILR1Q7Z6M3 343 aa7.38□□□□□ -1.23
COPS3-216ENST00000579716 KSR1Q8IVT5 923 aa7.38□□□□□ -1.23
COPS3-216ENST00000579716 SPACA3Q8IXA5 215 aa7.38□□□□□ -1.23
COPS3-216ENST00000579716 TOP6BLQ8N6T0 577 aa7.38□□□□□ -1.23
COPS3-216ENST00000579716 KIAA1524Q8TCG1 905 aa7.38□□□□□ -1.23
COPS3-216ENST00000579716 BICD2Q8TD16 824 aa7.38□□□□□ -1.23
COPS3-216ENST00000579716 TRIM63Q969Q1 353 aa7.38□□□□□ -1.23
COPS3-216ENST00000579716 TNIP3Q96KP6 325 aa7.38□□□□□ -1.23
COPS3-216ENST00000579716 BAG1Q99933 345 aaPredicted RBP7.38□□□□□ -1.23
COPS3-216ENST00000579716 MMTAG2Q9BU76 263 aaKnown RBP7.38□□□□□ -1.23
COPS3-216ENST00000579716 BRMS1Q9HCU9 246 aa7.38□□□□□ -1.23
COPS3-216ENST00000579716 TCF7L2Q9NQB0 619 aa7.38□□□□□ -1.23
COPS3-216ENST00000579716 AIPL1Q9NZN9 384 aa7.38□□□□□ -1.23
COPS3-216ENST00000579716 PPARGC1AQ9UBK2 798 aaKnown RBP7.38□□□□□ -1.23
COPS3-216ENST00000579716 STRIP2Q9ULQ0 834 aa7.38□□□□□ -1.23
COPS3-216ENST00000579716 RRP7AQ9Y3A4 280 aaKnown RBP7.38□□□□□ -1.23
COPS3-216ENST00000579716 AKNAQ7Z591 1439 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 CNTNAP4Q9C0A0 1308 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 SYNDIG1LA6NDD5 238 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 H0YHG0 523 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 PRPF3O43395 683 aaKnown RBP7.37□□□□□ -1.23
COPS3-216ENST00000579716 MBD4O95243 580 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 ZNF865P0CJ78 1059 aaPredicted RBP7.37□□□□□ -1.23
COPS3-216ENST00000579716 TSPY4P0CV99 314 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 TSPY10P0CW01 314 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 ATP6V1B1P15313 513 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 CAPN3P20807 821 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 HSPA1LP34931 641 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 MAPK9P45984 424 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 AKAP17AQ02040 695 aaKnown RBP7.37□□□□□ -1.23
COPS3-216ENST00000579716 TM4SF20Q53R12 229 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 C2orf27AQ580R0 203 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 CCDC122Q5T0U0 273 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 INTS11Q5TA45 600 aaKnown RBP7.37□□□□□ -1.23
COPS3-216ENST00000579716 GALNT17Q6IS24 598 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 CXorf57Q6NSI4 855 aaKnown RBP7.37□□□□□ -1.23
COPS3-216ENST00000579716 LCNL1Q6ZST4 164 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 ZBTB46Q86UZ6 589 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 NLRP14Q86W24 1093 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 LRRC49Q8IUZ0 686 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 NACC2Q96BF6 587 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 CHMP4CQ96CF2 233 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 TIFAQ96CG3 184 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 MFSD3Q96ES6 412 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 CFAP36Q96G28 342 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 RSRC1Q96IZ7 334 aaKnown RBP7.37□□□□□ -1.23
COPS3-216ENST00000579716 FAM84AQ96KN4 292 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 SLC39A3Q9BRY0 314 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 DNAI2Q9GZS0 605 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 ANKEF1Q9NU02 776 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 AGTPBP1Q9UPW5 1226 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 CTNND2Q9UQB3 1225 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 MSRB2Q9Y3D2 182 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 CD2APQ9Y5K6 639 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 AK5Q9Y6K8 562 aa7.37□□□□□ -1.23
COPS3-216ENST00000579716 A0A0B4J203 849 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 TSPY2A6NKD2 308 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 RTCAO00442 366 aaKnown RBP7.36□□□□□ -1.23
COPS3-216ENST00000579716 SLC27A2O14975 620 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 RASA4O43374 803 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 GFPT2O94808 682 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 CTSHP09668 335 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 TSPY3P0CV98 308 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 TSPY8P0CW00 308 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 HSD3B1P14060 373 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 FERP16591 822 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 CPEP16870 476 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 GALNSP34059 522 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 NASPP49321 788 aaPredicted RBP7.36□□□□□ -1.23
COPS3-216ENST00000579716 CASP7P55210 303 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 TSPY1Q01534 308 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 BECN1Q14457 450 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 HECTD3Q5T447 861 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 VPS53Q5VIR6 699 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 FIP1L1Q6UN15 594 aaKnown RBP7.36□□□□□ -1.23
COPS3-216ENST00000579716 TMCO3Q6UWJ1 677 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 PI16Q6UXB8 463 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 SPATA5Q8NB90 893 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 MGARPQ8TDB4 240 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 THAP3Q8WTV1 239 aaPredicted RBP7.36□□□□□ -1.23
COPS3-216ENST00000579716 LIN37Q96GY3 246 aaPredicted RBP7.36□□□□□ -1.23
COPS3-216ENST00000579716 NAF1Q96HR8 494 aaKnown RBP7.36□□□□□ -1.23
COPS3-216ENST00000579716 SMAD5Q99717 465 aaKnown RBP7.36□□□□□ -1.23
COPS3-216ENST00000579716 NIF3L1Q9GZT8 377 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 FBRSQ9HAH7 460 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 NCOA5Q9HCD5 579 aaKnown RBP7.36□□□□□ -1.23
COPS3-216ENST00000579716 ZNF304Q9HCX3 659 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 ALG13Q9NP73 1137 aaKnown RBP7.36□□□□□ -1.23
COPS3-216ENST00000579716 WDR35Q9P2L0 1181 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 TRAF3IP3Q9Y228 551 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 TRIM17Q9Y577 477 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 SNX11Q9Y5W9 270 aa7.36□□□□□ -1.23
COPS3-216ENST00000579716 LRRC10BA6NIK2 292 aa7.35□□□□□ -1.23
COPS3-216ENST00000579716 F5H423 210 aaPredicted RBP7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms