RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 A6NJR5 290 aa11.51□□□□□ -0.57
SS18-210ENST00000578700 PI4K2BG5E9Z4 385 aa11.51□□□□□ -0.57
SS18-210ENST00000578700 ARIH2O95376 493 aa11.51□□□□□ -0.57
SS18-210ENST00000578700 GOLGA8HP0CJ92 632 aa11.51□□□□□ -0.57
SS18-210ENST00000578700 PDHBP11177 359 aa11.51□□□□□ -0.57
SS18-210ENST00000578700 GNA11P29992 359 aa11.51□□□□□ -0.57
SS18-210ENST00000578700 NASPP49321 788 aaPredicted RBP11.51□□□□□ -0.57
SS18-210ENST00000578700 MRE11P49959 708 aa11.51□□□□□ -0.57
SS18-210ENST00000578700 PTPN11Q06124 597 aaPredicted RBP11.51□□□□□ -0.57
SS18-210ENST00000578700 LY6KQ17RY6 165 aa11.51□□□□□ -0.57
SS18-210ENST00000578700 USH1GQ495M9 461 aa11.51□□□□□ -0.57
SS18-210ENST00000578700 GDF6Q6KF10 455 aaPredicted RBP11.51□□□□□ -0.57
SS18-210ENST00000578700 EP400NLQ6ZTU2 488 aa11.51□□□□□ -0.57
SS18-210ENST00000578700 STAG2Q8N3U4 1231 aa11.51□□□□□ -0.57
SS18-210ENST00000578700 AFG1LQ8WV93 481 aa11.51□□□□□ -0.57
SS18-210ENST00000578700 ANP32BQ92688 251 aaKnown RBP11.51□□□□□ -0.57
SS18-210ENST00000578700 SUGCTQ9HAC7 445 aa11.51□□□□□ -0.57
SS18-210ENST00000578700 C6orf50Q9HD87 102 aa11.51□□□□□ -0.57
SS18-210ENST00000578700 C11orf16Q9NQ32 467 aa11.51□□□□□ -0.57
SS18-210ENST00000578700 C5orf42Q9H799 3197 aa11.51□□□□□ -0.57
SS18-210ENST00000578700 A0A1W2PQ27 194 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 A0A1W2PQ64 194 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 A0A1W2PQD8 194 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 B4DLN1 442 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 KINO60870 393 aaKnown RBP11.5□□□□□ -0.57
SS18-210ENST00000578700 SELPP16109 830 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 KCNA5P22460 613 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 MRPL12P52815 198 aaKnown RBP11.5□□□□□ -0.57
SS18-210ENST00000578700 NAPAP54920 295 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 SLC39A14Q15043 492 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 CNKSR3Q6P9H4 555 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 BTNL9Q6UXG8 535 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 LRRC8DQ7L1W4 858 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 GJD3Q8N144 294 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 LINC00301Q8NCQ3 95 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 CAGE1Q8TC20 777 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 AFAP1L1Q8TED9 768 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 TGS1Q96RS0 853 aaKnown RBP11.5□□□□□ -0.57
SS18-210ENST00000578700 RAD9AQ99638 391 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 NUP62CLQ9H1M0 184 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 UBE2ZQ9H832 354 aaPredicted RBP11.5□□□□□ -0.57
SS18-210ENST00000578700 BARHL2Q9NY43 387 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 LMCD1Q9NZU5 365 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 TMEM63CQ9P1W3 806 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 CLIC4Q9Y696 253 aa11.5□□□□□ -0.57
SS18-210ENST00000578700 LOC102724159A0A0B4J2E5 919 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 CCDC194A0A1B0GVG4 234 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 SYCE3A1L190 88 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 NBNO60934 754 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 PPP6R2O75170 966 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 GH1P01241 217 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 SNHG28P0DPA3 235 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 CKBP12277 381 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 IL9P15248 144 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 TRAPPC10P48553 1259 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 ZNF543Q08ER8 600 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 TRAF1Q13077 416 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 IKBKEQ14164 716 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 GPNMBQ14956 572 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 PWP2Q15269 919 aaKnown RBP11.49□□□□□ -0.57
SS18-210ENST00000578700 TCTN1Q2MV58 587 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 ADALQ6DHV7 355 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 PPP1R18Q6NYC8 613 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 LRSAM1Q6UWE0 723 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 HOMER1Q86YM7 354 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 BLIDQ8IZY5 108 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 C7orf31Q8N865 590 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 DNERQ8NFT8 737 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 MRPS27Q92552 414 aaKnown RBP11.49□□□□□ -0.57
SS18-210ENST00000578700 TBC1D5Q92609 795 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 DHX38Q92620 1227 aaKnown RBP11.49□□□□□ -0.57
SS18-210ENST00000578700 UBA5Q9GZZ9 404 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 TNMDQ9H2S6 317 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 VAT1LQ9HCJ6 419 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 HDAC6Q9UBN7 1215 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 PCDHA4Q9UN74 947 aa11.49□□□□□ -0.57
SS18-210ENST00000578700 LINC01553A4QN01 128 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 SORBS3O60504 671 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 CUTAO60888 179 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 GJB5O95377 273 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 MMP3P08254 477 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 EDNRBP24530 442 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 ERVK-21P61565 698 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 FAM160A1Q05DH4 1040 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 NR5A1Q13285 461 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 PTCRAQ6ISU1 281 aaPredicted RBP11.48□□□□□ -0.57
SS18-210ENST00000578700 FSIP1Q8NA03 581 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 DAGLBQ8NCG7 672 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.48□□□□□ -0.57
SS18-210ENST00000578700 GPKOWQ92917 476 aaPredicted RBP eCLIP11.48□□□□□ -0.57
SS18-210ENST00000578700 TAAR1Q96RJ0 339 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 GLT8D2Q9H1C3 349 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 CPVLQ9H3G5 476 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 TSPY26PQ9H489 355 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 RIOX1Q9H6W3 641 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 PCDHA7Q9UN72 937 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 SIP14410 1827 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 KIAA1217Q5T5P2 1943 aa11.48□□□□□ -0.57
SS18-210ENST00000578700 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.47□□□□□ -0.57
SS18-210ENST00000578700 PNMA6FA0A0J9YX94 578 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms