RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 PTCRAQ6ISU1 281 aaPredicted RBP15.66■□□□□ 0.1
CCDC40-216ENST00000576241 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.66■□□□□ 0.1
CCDC40-216ENST00000576241 ZNF713Q8N859 430 aaPredicted RBP15.66■□□□□ 0.1
CCDC40-216ENST00000576241 TGS1Q96RS0 853 aaKnown RBP15.66■□□□□ 0.1
CCDC40-216ENST00000576241 SMARCAD1Q9H4L7 1026 aa15.66■□□□□ 0.1
CCDC40-216ENST00000576241 RIC8AQ9NPQ8 531 aa15.66■□□□□ 0.1
CCDC40-216ENST00000576241 ERAP1Q9NZ08 941 aa15.66■□□□□ 0.1
CCDC40-216ENST00000576241 INSL6Q9Y581 213 aa15.66■□□□□ 0.1
CCDC40-216ENST00000576241 V9GY48 417 aaPredicted RBP15.66■□□□□ 0.1
CCDC40-216ENST00000576241 MARK3P27448 753 aa15.65■□□□□ 0.1
CCDC40-216ENST00000576241 RCAN1P53805 252 aa15.65■□□□□ 0.1
CCDC40-216ENST00000576241 ADAM17P78536 824 aa15.65■□□□□ 0.1
CCDC40-216ENST00000576241 PPFIA1Q13136 1202 aa15.65■□□□□ 0.1
CCDC40-216ENST00000576241 TAF2Q6P1X5 1199 aa15.65■□□□□ 0.1
CCDC40-216ENST00000576241 RSPH3Q86UC2 560 aa15.65■□□□□ 0.1
CCDC40-216ENST00000576241 GDPD5Q8WTR4 605 aa15.65■□□□□ 0.1
CCDC40-216ENST00000576241 APBB2Q92870 758 aa15.65■□□□□ 0.1
CCDC40-216ENST00000576241 SDF4Q9BRK5 362 aa15.65■□□□□ 0.1
CCDC40-216ENST00000576241 GLT8D2Q9H1C3 349 aa15.65■□□□□ 0.1
CCDC40-216ENST00000576241 JPH1Q9HDC5 661 aaPredicted RBP15.65■□□□□ 0.1
CCDC40-216ENST00000576241 BARHL2Q9NY43 387 aa15.65■□□□□ 0.1
CCDC40-216ENST00000576241 MTUS1Q9ULD2 1270 aa15.65■□□□□ 0.1
CCDC40-216ENST00000576241 CCDC196A0A1B0GTZ2 297 aa15.64■□□□□ 0.09
CCDC40-216ENST00000576241 GSTTP1A0A1W2PQM5 241 aa15.64■□□□□ 0.09
CCDC40-216ENST00000576241 LINC01553A4QN01 128 aa15.64■□□□□ 0.09
CCDC40-216ENST00000576241 STXBP3O00186 592 aa15.64■□□□□ 0.09
CCDC40-216ENST00000576241 ERVK-21P61565 698 aa15.64■□□□□ 0.09
CCDC40-216ENST00000576241 FUT2Q10981 343 aa15.64■□□□□ 0.09
CCDC40-216ENST00000576241 AP3B2Q13367 1082 aa15.64■□□□□ 0.09
CCDC40-216ENST00000576241 FAM26DQ5JW98 314 aa15.64■□□□□ 0.09
CCDC40-216ENST00000576241 PRSS33Q8NF86 280 aa15.64■□□□□ 0.09
CCDC40-216ENST00000576241 TNPO1Q92973 898 aaKnown RBP15.64■□□□□ 0.09
CCDC40-216ENST00000576241 CCDC136Q96JN2 1154 aa15.64■□□□□ 0.09
CCDC40-216ENST00000576241 MFSD14AQ96MC6 490 aa15.64■□□□□ 0.09
CCDC40-216ENST00000576241 MXRA8Q9BRK3 442 aa15.64■□□□□ 0.09
CCDC40-216ENST00000576241 IFIH1Q9BYX4 1025 aaKnown RBP15.64■□□□□ 0.09
CCDC40-216ENST00000576241 AZI2Q9H6S1 392 aa15.64■□□□□ 0.09
CCDC40-216ENST00000576241 KCNH7Q9NS40 1196 aa15.64■□□□□ 0.09
CCDC40-216ENST00000576241 LMCD1Q9NZU5 365 aa15.64■□□□□ 0.09
CCDC40-216ENST00000576241 SLC9A2Q9UBY0 812 aa15.64■□□□□ 0.09
CCDC40-216ENST00000576241 TUBE1Q9UJT0 475 aa15.64■□□□□ 0.09
CCDC40-216ENST00000576241 SMCO2A6NFE2 343 aa15.63■□□□□ 0.09
CCDC40-216ENST00000576241 GRXCR2A6NFK2 248 aa15.63■□□□□ 0.09
CCDC40-216ENST00000576241 METAP2P50579 478 aaKnown RBP eCLIP15.63■□□□□ 0.09
CCDC40-216ENST00000576241 MKRN4PQ13434 485 aaPredicted RBP15.63■□□□□ 0.09
CCDC40-216ENST00000576241 GRIK4Q16099 956 aa15.63■□□□□ 0.09
CCDC40-216ENST00000576241 TYW1BQ6NUM6 668 aa15.63■□□□□ 0.09
CCDC40-216ENST00000576241 RPAINQ86UA6 219 aa15.63■□□□□ 0.09
CCDC40-216ENST00000576241 PGBD1Q96JS3 809 aa15.63■□□□□ 0.09
CCDC40-216ENST00000576241 JAKMIP1Q96N16 626 aaKnown RBP15.63■□□□□ 0.09
CCDC40-216ENST00000576241 YME1L1Q96TA2 773 aa15.63■□□□□ 0.09
CCDC40-216ENST00000576241 ANO3Q9BYT9 981 aa15.63■□□□□ 0.09
CCDC40-216ENST00000576241 ZFHX2Q9C0A1 2572 aaPredicted RBP15.63■□□□□ 0.09
CCDC40-216ENST00000576241 RPLP2P05387 115 aaKnown RBP15.62■□□□□ 0.09
CCDC40-216ENST00000576241 CDC27P30260 824 aa15.62■□□□□ 0.09
CCDC40-216ENST00000576241 ZNF76P36508 570 aa15.62■□□□□ 0.09
CCDC40-216ENST00000576241 SREBF1P36956 1147 aa15.62■□□□□ 0.09
CCDC40-216ENST00000576241 HTRA4P83105 476 aaPredicted RBP15.62■□□□□ 0.09
CCDC40-216ENST00000576241 CEP55Q53EZ4 464 aa15.62■□□□□ 0.09
CCDC40-216ENST00000576241 BLOC1S2Q6QNY1 142 aa15.62■□□□□ 0.09
CCDC40-216ENST00000576241 RUFY4Q6ZNE9 571 aa15.62■□□□□ 0.09
CCDC40-216ENST00000576241 SUGCTQ9HAC7 445 aa15.62■□□□□ 0.09
CCDC40-216ENST00000576241 TRIOO75962 3097 aa15.62■□□□□ 0.09
CCDC40-216ENST00000576241 NFASCO94856 1347 aa15.62■□□□□ 0.09
CCDC40-216ENST00000576241 PTPRSQ13332 1948 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 RRN3P2A6NIE6 340 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 RBAK-RBAKDNI3L0D1 243 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 UPP2O95045 317 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 REC8O95072 547 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 CHRNA1P02708 482 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 GHRP10912 638 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 ACTR2P61160 394 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 IGBP1P78318 339 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 APOBRQ0VD83 1088 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 Q6ZUG5 572 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 FBXO22Q8NEZ5 403 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 CYP2W1Q8TAV3 490 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 CCDC12Q8WUD4 166 aaPredicted RBP15.61■□□□□ 0.09
CCDC40-216ENST00000576241 BRF1Q92994 677 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 TOP1MTQ969P6 601 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 OSBPL7Q9BZF2 842 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 FAM217BQ9NTX9 383 aaPredicted RBP15.61■□□□□ 0.09
CCDC40-216ENST00000576241 TRPC6Q9Y210 931 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 DOCK5Q9H7D0 1870 aa15.61■□□□□ 0.09
CCDC40-216ENST00000576241 MBLAC1A4D2B0 266 aaPredicted RBP15.6■□□□□ 0.09
CCDC40-216ENST00000576241 ARP10275 920 aa15.6■□□□□ 0.09
CCDC40-216ENST00000576241 SCG2P13521 617 aa15.6■□□□□ 0.09
CCDC40-216ENST00000576241 CPA1P15085 419 aa15.6■□□□□ 0.09
CCDC40-216ENST00000576241 HSPA4P34932 840 aa15.6■□□□□ 0.09
CCDC40-216ENST00000576241 ADD1P35611 737 aaKnown RBP15.6■□□□□ 0.09
CCDC40-216ENST00000576241 PTPN5P54829 565 aa15.6■□□□□ 0.09
CCDC40-216ENST00000576241 PFKFB3Q16875 520 aaPredicted RBP15.6■□□□□ 0.09
CCDC40-216ENST00000576241 IER5LQ5T953 404 aa15.6■□□□□ 0.09
CCDC40-216ENST00000576241 MCTP2Q6DN12 878 aa15.6■□□□□ 0.09
CCDC40-216ENST00000576241 NIPA1Q7RTP0 329 aa15.6■□□□□ 0.09
CCDC40-216ENST00000576241 SP7Q8TDD2 431 aaPredicted RBP15.6■□□□□ 0.09
CCDC40-216ENST00000576241 DNAJB3Q8WWF6 145 aa15.6■□□□□ 0.09
CCDC40-216ENST00000576241 KCNB2Q92953 911 aa15.6■□□□□ 0.09
CCDC40-216ENST00000576241 SAMD11Q96NU1 681 aa15.6■□□□□ 0.09
CCDC40-216ENST00000576241 C17orf80Q9BSJ5 609 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms