RNA–Protein interactions for RNA: ENST00000575454.1

SMG6-218, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 652 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-218ENST00000575454 ITGB1P05556 798 aa10.37□□□□□ -0.75
SMG6-218ENST00000575454 GTF2F1P35269 517 aaKnown RBP eCLIP10.37□□□□□ -0.75
SMG6-218ENST00000575454 TCF7P36402 384 aaPredicted RBP10.37□□□□□ -0.75
SMG6-218ENST00000575454 NRIP1P48552 1158 aa10.37□□□□□ -0.75
SMG6-218ENST00000575454 RRP1P56182 461 aaKnown RBP10.37□□□□□ -0.75
SMG6-218ENST00000575454 MRPS6P82932 125 aaKnown RBP10.37□□□□□ -0.75
SMG6-218ENST00000575454 TCF15Q12870 199 aa10.37□□□□□ -0.75
SMG6-218ENST00000575454 SCN5AQ14524 2016 aa10.37□□□□□ -0.75
SMG6-218ENST00000575454 SART3Q15020 963 aaKnown RBP10.37□□□□□ -0.75
SMG6-218ENST00000575454 GRIK4Q16099 956 aa10.37□□□□□ -0.75
SMG6-218ENST00000575454 PDE12Q6L8Q7 609 aaKnown RBP10.37□□□□□ -0.75
SMG6-218ENST00000575454 RUFY4Q6ZNE9 571 aa10.37□□□□□ -0.75
SMG6-218ENST00000575454 MICAL1Q8TDZ2 1067 aa10.37□□□□□ -0.75
SMG6-218ENST00000575454 POF1BQ8WVV4 589 aa10.37□□□□□ -0.75
SMG6-218ENST00000575454 GLG1Q92896 1179 aa10.37□□□□□ -0.75
SMG6-218ENST00000575454 ZFP91Q96JP5 570 aaPredicted RBP10.37□□□□□ -0.75
SMG6-218ENST00000575454 PHOX2BQ99453 314 aa10.37□□□□□ -0.75
SMG6-218ENST00000575454 TANC1Q9C0D5 1861 aa10.37□□□□□ -0.75
SMG6-218ENST00000575454 SMARCAD1Q9H4L7 1026 aa10.37□□□□□ -0.75
SMG6-218ENST00000575454 TLE6Q9H808 572 aa10.37□□□□□ -0.75
SMG6-218ENST00000575454 AAASQ9NRG9 546 aa10.37□□□□□ -0.75
SMG6-218ENST00000575454 USP15Q9Y4E8 981 aaPredicted RBP10.37□□□□□ -0.75
SMG6-218ENST00000575454 PCDHB12Q9Y5F1 795 aa10.37□□□□□ -0.75
SMG6-218ENST00000575454 MRPL42Q9Y6G3 142 aaKnown RBP10.37□□□□□ -0.75
SMG6-218ENST00000575454 TET1Q8NFU7 2136 aa10.37□□□□□ -0.75
SMG6-218ENST00000575454 CACNA1HO95180 2353 aa10.37□□□□□ -0.75
SMG6-218ENST00000575454 PIK3CDO00329 1044 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 CSPG5O95196 566 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 CD52P31358 61 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 SP4Q02446 784 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 SEMA3FQ13275 785 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 GRM4Q14833 912 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 SEC23AQ15436 765 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 RBM23Q86U06 439 aaKnown RBP10.36□□□□□ -0.75
SMG6-218ENST00000575454 NME8Q8N427 588 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 KLHL23Q8NBE8 558 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 SMARCC2Q8TAQ2 1214 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 DNAJB3Q8WWF6 145 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 ATOH1Q92858 354 aaPredicted RBP10.36□□□□□ -0.75
SMG6-218ENST00000575454 GPRASP2Q96D09 838 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 RPGRIP1Q96KN7 1286 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 OSBPL3Q9H4L5 887 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 LRFN2Q9ULH4 789 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 CDY2AQ9Y6F7 541 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 DMDP11532 3685 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 DCHS1Q96JQ0 3298 aa10.36□□□□□ -0.75
SMG6-218ENST00000575454 MYH7P12883 1935 aa10.35□□□□□ -0.75
SMG6-218ENST00000575454 MAFGO15525 162 aa10.35□□□□□ -0.75
SMG6-218ENST00000575454 SCG2P13521 617 aa10.35□□□□□ -0.75
SMG6-218ENST00000575454 DNAJB1P25685 340 aa10.35□□□□□ -0.75
SMG6-218ENST00000575454 AVPR2P30518 371 aa10.35□□□□□ -0.75
SMG6-218ENST00000575454 PAK2Q13177 524 aa10.35□□□□□ -0.75
SMG6-218ENST00000575454 AAMPQ13685 434 aa10.35□□□□□ -0.75
SMG6-218ENST00000575454 ODR4Q5SWX8 454 aa10.35□□□□□ -0.75
SMG6-218ENST00000575454 CATIPQ7Z7H3 387 aa10.35□□□□□ -0.75
SMG6-218ENST00000575454 CRIPAKQ8N1N5 446 aa10.35□□□□□ -0.75
SMG6-218ENST00000575454 NEK1Q96PY6 1258 aa10.35□□□□□ -0.75
SMG6-218ENST00000575454 LNPKQ9C0E8 428 aa10.35□□□□□ -0.75
SMG6-218ENST00000575454 AZI2Q9H6S1 392 aa10.35□□□□□ -0.75
SMG6-218ENST00000575454 BARX2Q9UMQ3 279 aaPredicted RBP10.35□□□□□ -0.75
SMG6-218ENST00000575454 COL4A4P53420 1690 aaPredicted RBP10.34□□□□□ -0.75
SMG6-218ENST00000575454 IFIT3O14879 490 aaKnown RBP10.34□□□□□ -0.75
SMG6-218ENST00000575454 CYTH3O43739 400 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 MARK3P27448 753 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 SMARCA1P28370 1054 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 KIF5BP33176 963 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 PTPN21Q16825 1174 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 PAN2Q504Q3 1202 aaKnown RBP10.34□□□□□ -0.75
SMG6-218ENST00000575454 MARCH8Q5T0T0 291 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 SPOUT1Q5T280 376 aaKnown RBP10.34□□□□□ -0.75
SMG6-218ENST00000575454 ADGRD2Q7Z7M1 963 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 ZBTB33Q86T24 672 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 ATP8B4Q8TF62 1192 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 SUSD6Q92537 303 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 RRP36Q96EU6 259 aaKnown RBP10.34□□□□□ -0.75
SMG6-218ENST00000575454 ASIC4Q96FT7 647 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 MAP3K14Q99558 947 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 LZTS2Q9BRK4 669 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 FAM49AQ9H0Q0 323 aaPredicted RBP10.34□□□□□ -0.75
SMG6-218ENST00000575454 AGO3Q9H9G7 860 aaKnown RBP10.34□□□□□ -0.75
SMG6-218ENST00000575454 TLR9Q9NR96 1032 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 SEC63Q9UGP8 760 aaKnown RBP10.34□□□□□ -0.75
SMG6-218ENST00000575454 PUF60Q9UHX1 559 aaKnown RBP10.34□□□□□ -0.75
SMG6-218ENST00000575454 PADI3Q9ULW8 664 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 SUPT16HQ9Y5B9 1047 aaKnown RBP10.34□□□□□ -0.75
SMG6-218ENST00000575454 PCDHB7Q9Y5E2 793 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 TRPV2Q9Y5S1 764 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 U3KPZ7 1027 aaPredicted RBP10.34□□□□□ -0.75
SMG6-218ENST00000575454 LCTP09848 1927 aa10.34□□□□□ -0.75
SMG6-218ENST00000575454 GSTTP1A0A1W2PQM5 241 aa10.33□□□□□ -0.76
SMG6-218ENST00000575454 PROB1E7EW31 1015 aa10.33□□□□□ -0.76
SMG6-218ENST00000575454 RBAK-RBAKDNI3L0D1 243 aa10.33□□□□□ -0.76
SMG6-218ENST00000575454 PPFIA3O75145 1194 aa10.33□□□□□ -0.76
SMG6-218ENST00000575454 GLP2RO95838 553 aa10.33□□□□□ -0.76
SMG6-218ENST00000575454 INSRRP14616 1297 aa10.33□□□□□ -0.76
SMG6-218ENST00000575454 KCNA2P16389 499 aa10.33□□□□□ -0.76
SMG6-218ENST00000575454 HOXB8P17481 243 aaPredicted RBP10.33□□□□□ -0.76
SMG6-218ENST00000575454 SARSP49591 514 aaKnown RBP10.33□□□□□ -0.76
SMG6-218ENST00000575454 IGBP1P78318 339 aa10.33□□□□□ -0.76
SMG6-218ENST00000575454 TROAPQ12815 778 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms