RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	PIK3R5	Q8WYR1	880 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	NAV1	Q8NEY1	1877 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	ERVK-9	P63128	1117 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	ALKBH5	Q6P6C2	394 aa	Known RBP	18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	OTUD6B	Q8N6M0	293 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	SYN2	Q92777	582 aa	Predicted RBP	18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	TRIM31	Q9BZY9	425 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	GAN	Q9H2C0	597 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	KCTD10	Q9H3F6	313 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	POLL	Q9UGP5	575 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	PCDHA1	Q9Y5I3	950 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	CAPN7	Q9Y6W3	813 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	KDM3A	Q9Y4C1	1321 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	TAL1	P17542	331 aa	Predicted RBP	18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	SKOR1	P84550	965 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	EXOC3L4	Q17RC7	722 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	ODF2	Q5BJF6	829 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	NAA35	Q5VZE5	725 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	SFR1	Q86XK3	245 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	SERPINB13	Q9UIV8	391 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	PCDHB13	Q9Y5F0	798 aa		18.72	■□□□□ 0.59
VPS53-215	ENST00000573028	SFI1	A8K8P3	1242 aa		18.71	■□□□□ 0.59
VPS53-215	ENST00000573028	BACH1	O14867	736 aa		18.71	■□□□□ 0.59
VPS53-215	ENST00000573028	ZBTB5	O15062	677 aa		18.71	■□□□□ 0.59
VPS53-215	ENST00000573028	UCHL3	P15374	230 aa		18.71	■□□□□ 0.59
VPS53-215	ENST00000573028	TNFRSF8	P28908	595 aa		18.71	■□□□□ 0.59
VPS53-215	ENST00000573028	FAM196A	Q6ZSG2	479 aa		18.71	■□□□□ 0.59
VPS53-215	ENST00000573028	UBLCP1	Q8WVY7	318 aa	Predicted RBP	18.71	■□□□□ 0.59
VPS53-215	ENST00000573028	STRC	Q7RTU9	1775 aa		18.71	■□□□□ 0.59
VPS53-215	ENST00000573028	GOLGB1	Q14789	3259 aa	Known RBP	18.71	■□□□□ 0.59
VPS53-215	ENST00000573028		E7EVH7	732 aa		18.71	■□□□□ 0.59
VPS53-215	ENST00000573028	KIF4A	O95239	1232 aa		18.71	■□□□□ 0.59
VPS53-215	ENST00000573028	IK	Q13123	557 aa	Predicted RBP	18.71	■□□□□ 0.59
VPS53-215	ENST00000573028	SHROOM1	Q2M3G4	852 aa	Predicted RBP	18.71	■□□□□ 0.59
VPS53-215	ENST00000573028	ARSH	Q5FYA8	562 aa		18.71	■□□□□ 0.59
VPS53-215	ENST00000573028	BARGIN	Q6ZT62	677 aa		18.71	■□□□□ 0.59
VPS53-215	ENST00000573028	ADAT2	Q7Z6V5	191 aa	Known RBP	18.71	■□□□□ 0.59
VPS53-215	ENST00000573028	C8orf37	Q96NL8	207 aa		18.71	■□□□□ 0.59
VPS53-215	ENST00000573028	SEPT2	Q15019	361 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	PRR5L	Q6MZQ0	368 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	ATP6V1G3	Q96LB4	118 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	IKZF4	Q9H2S9	585 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	TAF1D	Q9H5J8	278 aa	Predicted RBP	18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	USP40	Q9NVE5	1235 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	AIPL1	Q9NZN9	384 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	PCDHA2	Q9Y5H9	948 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	MAST2	Q6P0Q8	1798 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	RSPH10B2	B2RC85	870 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	RSPH10B	P0C881	870 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	MYB	P10242	640 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	XRCC5	P13010	732 aa	Known RBP	18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	CASP4	P49662	377 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	PRPF4B	Q13523	1007 aa	Known RBP	18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	USH1G	Q495M9	461 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	RC3H1	Q5TC82	1133 aa	Known RBP	18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	PEX26	Q7Z412	305 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	DHX36	Q9H2U1	1008 aa	Known RBP	18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	AMACR	Q9UHK6	382 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	DDX60L	Q5H9U9	1706 aa	Known RBP	18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	KRIT1	O00522	736 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	ITGA4	P13612	1032 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	ATP2B4	P23634	1241 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	CTNNA1	P35221	906 aa	Known RBP	18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	SLC30A10	Q6XR72	485 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	WHAMM	Q8TF30	809 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	U2AF1L4	Q8WU68	220 aa	Known RBP	18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	DPH5	Q9H2P9	285 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	NAGPA	Q9UK23	515 aa		18.7	■□□□□ 0.58
VPS53-215	ENST00000573028	SART1	O43290	800 aa	Known RBP	18.69	■□□□□ 0.58
VPS53-215	ENST00000573028	AFP	P02771	609 aa	Known RBP	18.69	■□□□□ 0.58
VPS53-215	ENST00000573028	QRICH1	Q2TAL8	776 aa		18.69	■□□□□ 0.58
VPS53-215	ENST00000573028	B4GALNT4	Q76KP1	1039 aa		18.69	■□□□□ 0.58
VPS53-215	ENST00000573028	IRF2BP2	Q7Z5L9	587 aa		18.69	■□□□□ 0.58
VPS53-215	ENST00000573028	ANO3	Q9BYT9	981 aa		18.69	■□□□□ 0.58
VPS53-215	ENST00000573028	CACNB3	P54284	484 aa		18.69	■□□□□ 0.58
VPS53-215	ENST00000573028	KCNA1	Q09470	495 aa		18.69	■□□□□ 0.58
VPS53-215	ENST00000573028	TCP10	Q12799	353 aa		18.69	■□□□□ 0.58
VPS53-215	ENST00000573028	KDM7A	Q6ZMT4	941 aa		18.69	■□□□□ 0.58
VPS53-215	ENST00000573028	DAAM2	Q86T65	1068 aa		18.69	■□□□□ 0.58
VPS53-215	ENST00000573028	CATSPER3	Q86XQ3	398 aa		18.69	■□□□□ 0.58
VPS53-215	ENST00000573028	METTL13	Q8N6R0	699 aa		18.69	■□□□□ 0.58
VPS53-215	ENST00000573028	NGLY1	Q96IV0	654 aa		18.69	■□□□□ 0.58
VPS53-215	ENST00000573028	REEP2	Q9BRK0	252 aa		18.69	■□□□□ 0.58
VPS53-215	ENST00000573028	PPP1R37	O75864	691 aa		18.68	■□□□□ 0.58
VPS53-215	ENST00000573028	GCNT3	O95395	438 aa		18.68	■□□□□ 0.58
VPS53-215	ENST00000573028	GCFC2	P16383	781 aa	Known RBP	18.68	■□□□□ 0.58
VPS53-215	ENST00000573028	HSD17B3	P37058	310 aa		18.68	■□□□□ 0.58
VPS53-215	ENST00000573028	CLK2	P49760	499 aa	Known RBP	18.68	■□□□□ 0.58
VPS53-215	ENST00000573028	TBC1D16	Q8TBP0	767 aa		18.68	■□□□□ 0.58
VPS53-215	ENST00000573028	RBM46	Q8TBY0	533 aa	Known RBP	18.68	■□□□□ 0.58
VPS53-215	ENST00000573028	SEPT11	Q9NVA2	429 aa	Known RBP	18.68	■□□□□ 0.58
VPS53-215	ENST00000573028	AJAP1	Q9UKB5	411 aa	Predicted RBP	18.68	■□□□□ 0.58
VPS53-215	ENST00000573028	NOC2L	Q9Y3T9	749 aa	Known RBP	18.68	■□□□□ 0.58
VPS53-215	ENST00000573028	AKAP3	O75969	853 aa		18.68	■□□□□ 0.58
VPS53-215	ENST00000573028	GFPT2	O94808	682 aa		18.68	■□□□□ 0.58
VPS53-215	ENST00000573028	SNHG28	P0DPA3	235 aa		18.68	■□□□□ 0.58
VPS53-215	ENST00000573028	IL1R1	P14778	569 aa		18.68	■□□□□ 0.58
VPS53-215	ENST00000573028	PON1	P27169	355 aa		18.68	■□□□□ 0.58
VPS53-215	ENST00000573028	MNAT1	P51948	309 aa		18.68	■□□□□ 0.58
VPS53-215	ENST00000573028	HDLBP	Q00341	1268 aa	Known RBP	18.68	■□□□□ 0.58

Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms