RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 SEMA3FQ13275 785 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 ZKSCAN8Q15776 578 aaPredicted RBP16.62■□□□□ 0.25
CIITA-204ENST00000570546 CC2D2BQ6DHV5 1058 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 SFR1Q86XK3 245 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 FAM81BQ96LP2 452 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 MMS19Q96T76 1030 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 DIS3Q9Y2L1 958 aaKnown RBP16.62■□□□□ 0.25
CIITA-204ENST00000570546 A0A0G2JLW4 131 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 RASGRF2O14827 1237 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 DPYDQ12882 1025 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 PDCLQ13371 301 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 PPP4R1Q8TF05 950 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 DCAF4Q8WV16 495 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 CCT6BQ92526 530 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.62■□□□□ 0.25
CIITA-204ENST00000570546 FAM205CA6NFA0 338 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 RNF8O76064 485 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 TMOD1P28289 359 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 TMED2Q15363 201 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 PPP1R18Q6NYC8 613 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 MICAL1Q8TDZ2 1067 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 KCNB2Q92953 911 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 CEP95Q96GE4 821 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 ACTR5Q9H9F9 607 aaPredicted RBP16.62■□□□□ 0.25
CIITA-204ENST00000570546 MYO1CO00159 1063 aa16.61■□□□□ 0.25
CIITA-204ENST00000570546 KCNB1Q14721 858 aa16.61■□□□□ 0.25
CIITA-204ENST00000570546 CEMIPQ8WUJ3 1361 aa16.61■□□□□ 0.25
CIITA-204ENST00000570546 FAM83BQ5T0W9 1011 aa16.61■□□□□ 0.25
CIITA-204ENST00000570546 DCAF15Q66K64 600 aa16.61■□□□□ 0.25
CIITA-204ENST00000570546 CYP4F22Q6NT55 531 aa16.61■□□□□ 0.25
CIITA-204ENST00000570546 ARHGEF18Q6ZSZ5 1173 aa16.61■□□□□ 0.25
CIITA-204ENST00000570546 RFX6Q8HWS3 928 aa16.61■□□□□ 0.25
CIITA-204ENST00000570546 RHOT2Q8IXI1 618 aa16.61■□□□□ 0.25
CIITA-204ENST00000570546 ANKRD35Q8N283 1001 aa16.61■□□□□ 0.25
CIITA-204ENST00000570546 COA1Q9GZY4 146 aa16.61■□□□□ 0.25
CIITA-204ENST00000570546 DNAJC12Q9UKB3 198 aa16.61■□□□□ 0.25
CIITA-204ENST00000570546 COL3A1P02461 1466 aaPredicted RBP16.61■□□□□ 0.25
CIITA-204ENST00000570546 PPP2R5AQ15172 486 aa16.61■□□□□ 0.25
CIITA-204ENST00000570546 CPSF2Q9P2I0 782 aaKnown RBP16.61■□□□□ 0.25
CIITA-204ENST00000570546 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.61■□□□□ 0.25
CIITA-204ENST00000570546 NR3C1P04150 777 aa16.61■□□□□ 0.25
CIITA-204ENST00000570546 YWHAGP61981 247 aaKnown RBP eCLIP16.61■□□□□ 0.25
CIITA-204ENST00000570546 KCNH2Q12809 1159 aa16.61■□□□□ 0.25
CIITA-204ENST00000570546 NR1I3Q14994 352 aa16.61■□□□□ 0.25
CIITA-204ENST00000570546 IRX2Q9BZI1 471 aaPredicted RBP16.61■□□□□ 0.25
CIITA-204ENST00000570546 MIS12Q9H081 205 aa16.61■□□□□ 0.25
CIITA-204ENST00000570546 TXNDC9O14530 226 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 CTIFO43310 598 aaKnown RBP16.6■□□□□ 0.25
CIITA-204ENST00000570546 FCER1AP12319 257 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 ALCAMQ13740 583 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 PDIA6Q15084 440 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 FAM133BQ5BKY9 247 aaKnown RBP16.6■□□□□ 0.25
CIITA-204ENST00000570546 ZNF512BQ96KM6 892 aaPredicted RBP16.6■□□□□ 0.25
CIITA-204ENST00000570546 CEP170P1Q96L14 293 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 GMNNO75496 209 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 RPS6KA4O75676 772 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 KRT1P04264 644 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 TRIP13Q15645 432 aaPredicted RBP16.6■□□□□ 0.25
CIITA-204ENST00000570546 FAM160B1Q5W0V3 765 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 PHLDB3Q6NSJ2 640 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 TRIM50Q86XT4 487 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 PAGR1Q9BTK6 254 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 CD2APQ9Y5K6 639 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 ARHGAP42A6NI28 874 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 H7C0C1 242 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 ATP5OP48047 213 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 FAM182BQ5T319 152 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 STAG2Q8N3U4 1231 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 ENGASEQ8NFI3 743 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 TCP11Q8WWU5 503 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 MYCBPQ99417 103 aaPredicted RBP16.6■□□□□ 0.25
CIITA-204ENST00000570546 MXD3Q9BW11 206 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 TBC1D9BQ66K14 1250 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 CCDC125Q86Z20 511 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 PIGOQ8TEQ8 1089 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 FAM84BQ96KN1 310 aaPredicted RBP16.6■□□□□ 0.25
CIITA-204ENST00000570546 ITIH6Q6UXX5 1313 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 MAGEA9P43362 315 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 BRDTQ58F21 947 aaPredicted RBP16.6■□□□□ 0.25
CIITA-204ENST00000570546 C6orf118Q5T5N4 469 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 ANKRD40Q6AI12 368 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 RINT1Q6NUQ1 792 aa16.6■□□□□ 0.25
CIITA-204ENST00000570546 GUF1Q8N442 669 aaKnown RBP16.6■□□□□ 0.25
CIITA-204ENST00000570546 MRPL47Q9HD33 250 aaKnown RBP16.6■□□□□ 0.25
CIITA-204ENST00000570546 GRID2IPA4D2P6 1211 aa16.59■□□□□ 0.25
CIITA-204ENST00000570546 POTEB3A0JP26 581 aa16.59■□□□□ 0.25
CIITA-204ENST00000570546 POTECB2RU33 542 aa16.59■□□□□ 0.25
CIITA-204ENST00000570546 SESN3P58005 492 aa16.59■□□□□ 0.25
CIITA-204ENST00000570546 ADCY2Q08462 1091 aa16.59■□□□□ 0.25
CIITA-204ENST00000570546 POTEBQ6S5H4 581 aa16.59■□□□□ 0.25
CIITA-204ENST00000570546 TBK1Q9UHD2 729 aa16.59■□□□□ 0.25
CIITA-204ENST00000570546 TARSL2A2RTX5 802 aaKnown RBP16.59■□□□□ 0.25
CIITA-204ENST00000570546 USP17L15C9J2P7 530 aa16.59■□□□□ 0.25
CIITA-204ENST00000570546 USP17L10C9JJH3 530 aa16.59■□□□□ 0.25
CIITA-204ENST00000570546 USP17L13C9JLJ4 530 aa16.59■□□□□ 0.25
CIITA-204ENST00000570546 USP17L11C9JVI0 530 aa16.59■□□□□ 0.25
CIITA-204ENST00000570546 USP17L18D6R9N7 530 aa16.59■□□□□ 0.25
CIITA-204ENST00000570546 USP17L22D6RA61 530 aa16.59■□□□□ 0.25
CIITA-204ENST00000570546 USP17L17D6RBQ6 530 aa16.59■□□□□ 0.25
CIITA-204ENST00000570546 USP17L19D6RCP7 530 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms