RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 SCN4AP35499 1836 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 POTECB2RU33 542 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 RNF223E7ERA6 249 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 NFIBO00712 420 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 EYA4O95677 639 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 SERPINC1P01008 464 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 P4HBP07237 508 aaKnown RBP8.88□□□□□ -0.99
VPS39-213ENST00000570062 TGFB3P10600 412 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 SCP2P22307 547 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 CDC25AP30304 524 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 ABCD1P33897 745 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 INHBEP58166 350 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 ASIC1P78348 528 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 PAK1Q13153 545 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 CUL4BQ13620 913 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 BAATQ14032 418 aaPredicted RBP8.88□□□□□ -0.99
VPS39-213ENST00000570062 PGM5Q15124 567 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 STXBP2Q15833 593 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 NCAPH2Q6IBW4 605 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 NSMFQ6X4W1 530 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 C11orf57Q6ZUT1 292 aaPredicted RBP8.88□□□□□ -0.99
VPS39-213ENST00000570062 STXBP4Q6ZWJ1 553 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 DRC7Q8IY82 874 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 SMAP1Q8IYB5 467 aaPredicted RBP8.88□□□□□ -0.99
VPS39-213ENST00000570062 ANKRD35Q8N283 1001 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 SYT2Q8N9I0 419 aaPredicted RBP8.88□□□□□ -0.99
VPS39-213ENST00000570062 SLC17A8Q8NDX2 589 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 KCNV2Q8TDN2 545 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 PNMA5Q96PV4 448 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 HSD17B14Q9BPX1 270 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 SENP7Q9BQF6 1050 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 SPATC1LQ9H0A9 340 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 TMEM134Q9H6X4 195 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 ZSWIM4Q9H7M6 989 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 KCNH7Q9NS40 1196 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 CYP39A1Q9NYL5 469 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 VAV3Q9UKW4 847 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 KIAA1024Q9UPX6 916 aa8.88□□□□□ -0.99
VPS39-213ENST00000570062 DOCK1Q14185 1865 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 NFASCO94856 1347 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 PP2D1A8MPX8 630 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 FOXN1O15353 648 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 STRNO43815 780 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 LYPLA2O95372 231 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 KRT18P05783 430 aaKnown RBP8.87□□□□□ -0.99
VPS39-213ENST00000570062 NR3C2P08235 984 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 PLA2G4BP0C869 781 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 HSPA1AP0DMV8 641 aaKnown RBP8.87□□□□□ -0.99
VPS39-213ENST00000570062 HSPA1BP0DMV9 641 aaKnown RBP8.87□□□□□ -0.99
VPS39-213ENST00000570062 GAP43P17677 238 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 SLC19A1P41440 591 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 ZNF75DP51815 510 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 HERVK_113P62684 666 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 PDE4DQ08499 809 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 SPIRE1Q08AE8 756 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 PLS1Q14651 629 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 NCAPHQ15003 741 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 KMT5BQ4FZB7 885 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 MUM1L1Q5H9M0 696 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 ZNF787Q6DD87 383 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 ZNF746Q6NUN9 644 aaPredicted RBP8.87□□□□□ -0.99
VPS39-213ENST00000570062 ANKRD23Q86SG2 305 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 CATSPER3Q86XQ3 398 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 ABRAQ8N0Z2 381 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 ADSSL1Q8N142 457 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 GUF1Q8N442 669 aaKnown RBP8.87□□□□□ -0.99
VPS39-213ENST00000570062 TBC1D5Q92609 795 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 TAAR1Q96RJ0 339 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 TSG101Q99816 390 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 EIF2AK1Q9BQI3 630 aaKnown RBP8.87□□□□□ -0.99
VPS39-213ENST00000570062 ASCC2Q9H1I8 757 aaPredicted RBP8.87□□□□□ -0.99
VPS39-213ENST00000570062 GBA2Q9HCG7 927 aaPredicted RBP8.87□□□□□ -0.99
VPS39-213ENST00000570062 AGO4Q9HCK5 861 aaKnown RBP8.87□□□□□ -0.99
VPS39-213ENST00000570062 HOMER2Q9NSB8 354 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 BLOC1S4Q9NUP1 217 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 MAGEC2Q9UBF1 373 aaPredicted RBP8.87□□□□□ -0.99
VPS39-213ENST00000570062 SEL1LQ9UBV2 794 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 NFE2L3Q9Y4A8 694 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 COL4A3BPQ9Y5P4 624 aa8.87□□□□□ -0.99
VPS39-213ENST00000570062 LRRC10BA6NIK2 292 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 WDR64B1ANS9 1081 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 GNA14O95837 355 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 ITGB5P18084 799 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 MSNP26038 577 aaKnown RBP8.86□□□□□ -0.99
VPS39-213ENST00000570062 EEF1GP26641 437 aaKnown RBP8.86□□□□□ -0.99
VPS39-213ENST00000570062 ICAM3P32942 547 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 QARSP47897 775 aaKnown RBP8.86□□□□□ -0.99
VPS39-213ENST00000570062 UBASH3AP57075 661 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 LRRC63Q05C16 580 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 MCM6Q14566 821 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 KCTD2Q14681 263 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 B3GNT9Q6UX72 402 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 OTUD6AQ7L8S5 288 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 MIER3Q7Z3K6 550 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 GRAMD1CQ8IYS0 662 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 GPRC5AQ8NFJ5 357 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 ERCC4Q92889 916 aaPredicted RBP8.86□□□□□ -0.99
VPS39-213ENST00000570062 IQCDQ96DY2 449 aa8.86□□□□□ -0.99
VPS39-213ENST00000570062 INPP4AQ96PE3 977 aaPredicted RBP8.86□□□□□ -0.99
VPS39-213ENST00000570062 P2RX7Q99572 595 aaKnown RBP8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms