RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 DCNP07585 359 aaKnown RBP13.19□□□□□ -0.3
CDH3-208ENST00000569036 CT47B1P0C2W7 299 aaPredicted RBP13.19□□□□□ -0.3
CDH3-208ENST00000569036 TRIM27P14373 513 aa13.19□□□□□ -0.3
CDH3-208ENST00000569036 RFX1P22670 979 aa13.19□□□□□ -0.3
CDH3-208ENST00000569036 TGM1P22735 817 aa13.19□□□□□ -0.3
CDH3-208ENST00000569036 MGAT3Q09327 533 aa13.19□□□□□ -0.3
CDH3-208ENST00000569036 KIAA1841Q6NSI8 718 aa13.19□□□□□ -0.3
CDH3-208ENST00000569036 NSUN6Q8TEA1 469 aaKnown RBP13.19□□□□□ -0.3
CDH3-208ENST00000569036 DCAF4Q8WV16 495 aa13.19□□□□□ -0.3
CDH3-208ENST00000569036 TAAR1Q96RJ0 339 aa13.19□□□□□ -0.3
CDH3-208ENST00000569036 SETD4Q9NVD3 440 aa13.19□□□□□ -0.3
CDH3-208ENST00000569036 COL20A1Q9P218 1284 aa13.19□□□□□ -0.3
CDH3-208ENST00000569036 DBR1Q9UK59 544 aaKnown RBP13.19□□□□□ -0.3
CDH3-208ENST00000569036 EXOC6BQ9Y2D4 811 aa13.19□□□□□ -0.3
CDH3-208ENST00000569036 LOXHD1Q8IVV2 1947 aa13.19□□□□□ -0.3
CDH3-208ENST00000569036 KAT6AQ92794 2004 aa13.18□□□□□ -0.3
CDH3-208ENST00000569036 WDR19Q8NEZ3 1342 aa13.18□□□□□ -0.3
CDH3-208ENST00000569036 IGF2RP11717 2491 aa13.18□□□□□ -0.3
CDH3-208ENST00000569036 POTEMA6NI47 508 aa13.18□□□□□ -0.3
CDH3-208ENST00000569036 NARSO43776 548 aaKnown RBP13.18□□□□□ -0.3
CDH3-208ENST00000569036 LGALS2P05162 132 aa13.18□□□□□ -0.3
CDH3-208ENST00000569036 FBXO47Q5MNV8 452 aa13.18□□□□□ -0.3
CDH3-208ENST00000569036 CELF3Q5SZQ8 465 aaKnown RBP13.18□□□□□ -0.3
CDH3-208ENST00000569036 RARS2Q5T160 578 aaKnown RBP13.18□□□□□ -0.3
CDH3-208ENST00000569036 POTEGQ6S5H5 508 aa13.18□□□□□ -0.3
CDH3-208ENST00000569036 RTN4RL1Q86UN2 441 aaPredicted RBP13.18□□□□□ -0.3
CDH3-208ENST00000569036 ERC1Q8IUD2 1116 aa13.18□□□□□ -0.3
CDH3-208ENST00000569036 THNSL1Q8IYQ7 743 aa13.18□□□□□ -0.3
CDH3-208ENST00000569036 MAML2Q8IZL2 1156 aaPredicted RBP13.18□□□□□ -0.3
CDH3-208ENST00000569036 RGS22Q8NE09 1264 aa13.18□□□□□ -0.3
CDH3-208ENST00000569036 SECISBP2LQ93073 1101 aaKnown RBP13.18□□□□□ -0.3
CDH3-208ENST00000569036 IWS1Q96ST2 819 aa13.18□□□□□ -0.3
CDH3-208ENST00000569036 TCF25Q9BQ70 676 aa13.18□□□□□ -0.3
CDH3-208ENST00000569036 TBC1D17Q9HA65 648 aa13.18□□□□□ -0.3
CDH3-208ENST00000569036 PARD6AQ9NPB6 346 aa13.18□□□□□ -0.3
CDH3-208ENST00000569036 ENTPD7Q9NQZ7 604 aa13.18□□□□□ -0.3
CDH3-208ENST00000569036 PNMA2Q9UL42 364 aa13.18□□□□□ -0.3
CDH3-208ENST00000569036 HCFC2Q9Y5Z7 792 aa13.18□□□□□ -0.3
CDH3-208ENST00000569036 SLC30A4O14863 429 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 NMT2O60551 498 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 EIF3JO75822 258 aaKnown RBP13.17□□□□□ -0.3
CDH3-208ENST00000569036 GGPS1O95749 300 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 PROS1P07225 676 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 CFHP08603 1231 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 STAG3L1P0CL83 205 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 GNAT1P11488 350 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 PMLP29590 882 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 TDO2P48775 406 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 ADAM17P78536 824 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 PPP4R3BQ5MIZ7 849 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 SPOUT1Q5T280 376 aaKnown RBP13.17□□□□□ -0.3
CDH3-208ENST00000569036 TSHZ1Q6ZSZ6 1077 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 COLGALT1Q8NBJ5 622 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 SYTL5Q8TDW5 730 aaPredicted RBP13.17□□□□□ -0.3
CDH3-208ENST00000569036 LMBR1Q8WVP7 490 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 TBC1D5Q92609 795 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 RMDN3Q96TC7 470 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 BOLA2Q9H3K6 86 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 KCNK12Q9HB15 430 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 AAASQ9NRG9 546 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 HCSTQ9UBK5 93 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 WNT16Q9UBV4 365 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 SMG5Q9UPR3 1016 aaKnown RBP13.17□□□□□ -0.3
CDH3-208ENST00000569036 LZTS1Q9Y250 596 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 PATJQ8NI35 1801 aa13.17□□□□□ -0.3
CDH3-208ENST00000569036 FRMPD2Q68DX3 1309 aaPredicted RBP13.16□□□□□ -0.3
CDH3-208ENST00000569036 MIA3Q5JRA6 1907 aa13.16□□□□□ -0.3
CDH3-208ENST00000569036 SCG2P13521 617 aa13.16□□□□□ -0.3
CDH3-208ENST00000569036 SHC2P98077 582 aa13.16□□□□□ -0.3
CDH3-208ENST00000569036 ARHGAP4P98171 946 aa13.16□□□□□ -0.3
CDH3-208ENST00000569036 USH1GQ495M9 461 aa13.16□□□□□ -0.3
CDH3-208ENST00000569036 KANK3Q6NY19 840 aa13.16□□□□□ -0.3
CDH3-208ENST00000569036 XRRA1Q6P2D8 792 aa13.16□□□□□ -0.3
CDH3-208ENST00000569036 RUFY4Q6ZNE9 571 aa13.16□□□□□ -0.3
CDH3-208ENST00000569036 FAM9BQ8IZU0 186 aa13.16□□□□□ -0.3
CDH3-208ENST00000569036 C12orf76Q8N812 135 aaPredicted RBP13.16□□□□□ -0.3
CDH3-208ENST00000569036 AGO3Q9H9G7 860 aaKnown RBP13.16□□□□□ -0.3
CDH3-208ENST00000569036 GPCPD1Q9NPB8 672 aa13.16□□□□□ -0.3
CDH3-208ENST00000569036 NGRNQ9NPE2 291 aaKnown RBP13.16□□□□□ -0.3
CDH3-208ENST00000569036 IL17RBQ9NRM6 502 aa13.16□□□□□ -0.3
CDH3-208ENST00000569036 CA14Q9ULX7 337 aa13.16□□□□□ -0.3
CDH3-208ENST00000569036 DSPP15924 2871 aaKnown RBP13.16□□□□□ -0.3
CDH3-208ENST00000569036 WDFY3Q8IZQ1 3526 aa13.16□□□□□ -0.3
CDH3-208ENST00000569036 EIF2AK2P19525 551 aaKnown RBP13.15□□□□□ -0.3
CDH3-208ENST00000569036 CD52P31358 61 aa13.15□□□□□ -0.3
CDH3-208ENST00000569036 ZNF528Q3MIS6 628 aa13.15□□□□□ -0.3
CDH3-208ENST00000569036 ATAT1Q5SQI0 421 aa13.15□□□□□ -0.3
CDH3-208ENST00000569036 FEZF2Q8TBJ5 459 aa13.15□□□□□ -0.3
CDH3-208ENST00000569036 NETO1Q8TDF5 533 aa13.15□□□□□ -0.3
CDH3-208ENST00000569036 MRPS27Q92552 414 aaKnown RBP13.15□□□□□ -0.3
CDH3-208ENST00000569036 CLUAP1Q96AJ1 413 aa13.15□□□□□ -0.3
CDH3-208ENST00000569036 ACSF2Q96CM8 615 aaPredicted RBP13.15□□□□□ -0.3
CDH3-208ENST00000569036 BORCS6Q96GS4 357 aa13.15□□□□□ -0.3
CDH3-208ENST00000569036 SIT1Q9Y3P8 196 aa13.15□□□□□ -0.3
CDH3-208ENST00000569036 CCDC171Q6TFL3 1326 aa13.14□□□□□ -0.31
CDH3-208ENST00000569036 NR3C2P08235 984 aa13.14□□□□□ -0.31
CDH3-208ENST00000569036 GLULP15104 373 aa13.14□□□□□ -0.31
CDH3-208ENST00000569036 UBA1P22314 1058 aaKnown RBP13.14□□□□□ -0.31
CDH3-208ENST00000569036 KCNA4P22459 653 aa13.14□□□□□ -0.31
CDH3-208ENST00000569036 HNRNPUQ00839 825 aaKnown RBP eCLIP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms