RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 ADCY7P51828 1080 aa19.26■□□□□ 0.67
CLN3-231ENST00000568422 NAPAP54920 295 aa19.26■□□□□ 0.67
CLN3-231ENST00000568422 TIGD5Q53EQ6 642 aa19.26■□□□□ 0.67
CLN3-231ENST00000568422 MARCH8Q5T0T0 291 aa19.26■□□□□ 0.67
CLN3-231ENST00000568422 TMEM192Q8IY95 271 aa19.26■□□□□ 0.67
CLN3-231ENST00000568422 IL17RAQ96F46 866 aa19.26■□□□□ 0.67
CLN3-231ENST00000568422 UBE2ZQ9H832 354 aaPredicted RBP19.26■□□□□ 0.67
CLN3-231ENST00000568422 PKD2L1Q9P0L9 805 aa19.26■□□□□ 0.67
CLN3-231ENST00000568422 SQORQ9Y6N5 450 aa19.26■□□□□ 0.67
CLN3-231ENST00000568422 BRWD1Q9NSI6 2320 aa19.26■□□□□ 0.67
CLN3-231ENST00000568422 GHRP10912 638 aa19.25■□□□□ 0.67
CLN3-231ENST00000568422 FUT2Q10981 343 aa19.25■□□□□ 0.67
CLN3-231ENST00000568422 AP3B2Q13367 1082 aa19.25■□□□□ 0.67
CLN3-231ENST00000568422 LPIN1Q14693 890 aa19.25■□□□□ 0.67
CLN3-231ENST00000568422 IER5Q5VY09 327 aa19.25■□□□□ 0.67
CLN3-231ENST00000568422 TSHZ1Q6ZSZ6 1077 aa19.25■□□□□ 0.67
CLN3-231ENST00000568422 PLPPR4Q7Z2D5 763 aa19.25■□□□□ 0.67
CLN3-231ENST00000568422 DNAJB3Q8WWF6 145 aa19.25■□□□□ 0.67
CLN3-231ENST00000568422 BARHL2Q9NY43 387 aa19.25■□□□□ 0.67
CLN3-231ENST00000568422 RWDD3Q9Y3V2 267 aa19.25■□□□□ 0.67
CLN3-231ENST00000568422 V9GY48 417 aaPredicted RBP19.25■□□□□ 0.67
CLN3-231ENST00000568422 TTC3P53804 2025 aa19.24■□□□□ 0.67
CLN3-231ENST00000568422 LOXHD1Q8IVV2 1947 aa19.24■□□□□ 0.67
CLN3-231ENST00000568422 INSRRP14616 1297 aa19.24■□□□□ 0.67
CLN3-231ENST00000568422 MRPS6P82932 125 aaKnown RBP19.24■□□□□ 0.67
CLN3-231ENST00000568422 GPM6BQ13491 265 aa19.24■□□□□ 0.67
CLN3-231ENST00000568422 LEXMQ3ZCV2 418 aa19.24■□□□□ 0.67
CLN3-231ENST00000568422 CEP55Q53EZ4 464 aa19.24■□□□□ 0.67
CLN3-231ENST00000568422 FBXO47Q5MNV8 452 aa19.24■□□□□ 0.67
CLN3-231ENST00000568422 FIBCD1Q8N539 461 aa19.24■□□□□ 0.67
CLN3-231ENST00000568422 BRPF3Q9ULD4 1205 aa19.24■□□□□ 0.67
CLN3-231ENST00000568422 SMCO2A6NFE2 343 aa19.23■□□□□ 0.67
CLN3-231ENST00000568422 STXBP3O00186 592 aa19.23■□□□□ 0.67
CLN3-231ENST00000568422 MEIS1O00470 390 aa19.23■□□□□ 0.67
CLN3-231ENST00000568422 RB1P06400 928 aa19.23■□□□□ 0.67
CLN3-231ENST00000568422 SLC26A2P50443 739 aa19.23■□□□□ 0.67
CLN3-231ENST00000568422 ACTR2P61160 394 aa19.23■□□□□ 0.67
CLN3-231ENST00000568422 PUS10Q3MIT2 529 aaKnown RBP19.23■□□□□ 0.67
CLN3-231ENST00000568422 TYW1BQ6NUM6 668 aa19.23■□□□□ 0.67
CLN3-231ENST00000568422 FAM43BQ6ZT52 329 aaPredicted RBP19.23■□□□□ 0.67
CLN3-231ENST00000568422 NIPA1Q7RTP0 329 aa19.23■□□□□ 0.67
CLN3-231ENST00000568422 CYP2W1Q8TAV3 490 aa19.23■□□□□ 0.67
CLN3-231ENST00000568422 PCYT2Q99447 389 aa19.23■□□□□ 0.67
CLN3-231ENST00000568422 ANO3Q9BYT9 981 aa19.23■□□□□ 0.67
CLN3-231ENST00000568422 TRPC6Q9Y210 931 aa19.23■□□□□ 0.67
CLN3-231ENST00000568422 PCDHA2Q9Y5H9 948 aa19.23■□□□□ 0.67
CLN3-231ENST00000568422 CDY2AQ9Y6F7 541 aa19.23■□□□□ 0.67
CLN3-231ENST00000568422 CCDC196A0A1B0GTZ2 297 aa19.22■□□□□ 0.67
CLN3-231ENST00000568422 GOLGA8AA7E2F4 631 aa19.22■□□□□ 0.67
CLN3-231ENST00000568422 GOLGA8BA8MQT2 603 aa19.22■□□□□ 0.67
CLN3-231ENST00000568422 C5orf67F2Z3F1 127 aa19.22■□□□□ 0.67
CLN3-231ENST00000568422 RBAK-RBAKDNI3L0D1 243 aa19.22■□□□□ 0.67
CLN3-231ENST00000568422 M0QZ92 97 aa19.22■□□□□ 0.67
CLN3-231ENST00000568422 ENPP3O14638 875 aa19.22■□□□□ 0.67
CLN3-231ENST00000568422 CDC45O75419 566 aa19.22■□□□□ 0.67
CLN3-231ENST00000568422 SREBF1P36956 1147 aa19.22■□□□□ 0.67
CLN3-231ENST00000568422 STAT5BP51692 787 aa19.22■□□□□ 0.67
CLN3-231ENST00000568422 IGBP1P78318 339 aa19.22■□□□□ 0.67
CLN3-231ENST00000568422 MCTP2Q6DN12 878 aa19.22■□□□□ 0.67
CLN3-231ENST00000568422 RASEFQ8IZ41 740 aa19.22■□□□□ 0.67
CLN3-231ENST00000568422 BANK1Q8NDB2 785 aa19.22■□□□□ 0.67
CLN3-231ENST00000568422 FTHL17Q9BXU8 183 aa19.22■□□□□ 0.67
CLN3-231ENST00000568422 AGO4Q9HCK5 861 aaKnown RBP19.22■□□□□ 0.67
CLN3-231ENST00000568422 KLF18A0A0U1RQI7 1052 aa19.21■□□□□ 0.67
CLN3-231ENST00000568422 ATG7O95352 703 aa19.21■□□□□ 0.67
CLN3-231ENST00000568422 ARP10275 920 aa19.21■□□□□ 0.67
CLN3-231ENST00000568422 KCNA5P22460 613 aa19.21■□□□□ 0.67
CLN3-231ENST00000568422 ZNF76P36508 570 aa19.21■□□□□ 0.67
CLN3-231ENST00000568422 CLK2P49760 499 aaKnown RBP19.21■□□□□ 0.67
CLN3-231ENST00000568422 ITGB3BPQ13352 177 aaPredicted RBP19.21■□□□□ 0.67
CLN3-231ENST00000568422 ADCK5Q3MIX3 580 aa19.21■□□□□ 0.67
CLN3-231ENST00000568422 NME8Q8N427 588 aa19.21■□□□□ 0.67
CLN3-231ENST00000568422 TCEANC2Q96MN5 208 aa19.21■□□□□ 0.67
CLN3-231ENST00000568422 C11orf84Q9BUA3 381 aaPredicted RBP19.21■□□□□ 0.67
CLN3-231ENST00000568422 LMAN2LQ9H0V9 348 aa19.21■□□□□ 0.67
CLN3-231ENST00000568422 NSUN3Q9H649 340 aaKnown RBP19.21■□□□□ 0.67
CLN3-231ENST00000568422 ADGRA3Q8IWK6 1321 aa19.21■□□□□ 0.67
CLN3-231ENST00000568422 POTEB3A0JP26 581 aa19.2■□□□□ 0.66
CLN3-231ENST00000568422 NCK2O43639 380 aa19.2■□□□□ 0.66
CLN3-231ENST00000568422 CTNNB1P35222 781 aa19.2■□□□□ 0.66
CLN3-231ENST00000568422 BMPR1AP36894 532 aa19.2■□□□□ 0.66
CLN3-231ENST00000568422 FGD1P98174 961 aa19.2■□□□□ 0.66
CLN3-231ENST00000568422 PLCB4Q15147 1175 aa19.2■□□□□ 0.66
CLN3-231ENST00000568422 POTEBQ6S5H4 581 aa19.2■□□□□ 0.66
CLN3-231ENST00000568422 CLP1Q92989 425 aaKnown RBP19.2■□□□□ 0.66
CLN3-231ENST00000568422 ZNF689Q96CS4 500 aaPredicted RBP19.2■□□□□ 0.66
CLN3-231ENST00000568422 PGBD1Q96JS3 809 aa19.2■□□□□ 0.66
CLN3-231ENST00000568422 FAM49AQ9H0Q0 323 aaPredicted RBP19.2■□□□□ 0.66
CLN3-231ENST00000568422 RC3H2Q9HBD1 1191 aaKnown RBP19.2■□□□□ 0.66
CLN3-231ENST00000568422 FAM217BQ9NTX9 383 aaPredicted RBP19.2■□□□□ 0.66
CLN3-231ENST00000568422 TRPV2Q9Y5S1 764 aa19.2■□□□□ 0.66
CLN3-231ENST00000568422 MYH9P35579 1960 aaKnown RBP19.19■□□□□ 0.66
CLN3-231ENST00000568422 IGKV6D-21A0A0A0MT36 114 aa19.19■□□□□ 0.66
CLN3-231ENST00000568422 SMIM35A0A1B0GVV1 85 aa19.19■□□□□ 0.66
CLN3-231ENST00000568422 DGKIO75912 1065 aa19.19■□□□□ 0.66
CLN3-231ENST00000568422 COL19A1Q14993 1142 aa19.19■□□□□ 0.66
CLN3-231ENST00000568422 PFKFB3Q16875 520 aaPredicted RBP19.19■□□□□ 0.66
CLN3-231ENST00000568422 FAM160B1Q5W0V3 765 aa19.19■□□□□ 0.66
CLN3-231ENST00000568422 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.19■□□□□ 0.66
CLN3-231ENST00000568422 NEK9Q8TD19 979 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms