RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	MRPL11	Q9Y3B7	192 aa	Known RBP	13.71	□□□□□ -0.21
CLK3-222	ENST00000568232	FAM186A	A6NE01	2351 aa		13.71	□□□□□ -0.22
CLK3-222	ENST00000568232	HOXA13	P31271	388 aa	Predicted RBP	13.7	□□□□□ -0.22
CLK3-222	ENST00000568232	HSD17B4	P51659	736 aa		13.7	□□□□□ -0.22
CLK3-222	ENST00000568232	MGAT3	Q09327	533 aa		13.7	□□□□□ -0.22
CLK3-222	ENST00000568232	PGM5	Q15124	567 aa		13.7	□□□□□ -0.22
CLK3-222	ENST00000568232	UTP14C	Q5TAP6	766 aa	Known RBP	13.7	□□□□□ -0.22
CLK3-222	ENST00000568232	CMTR2	Q8IYT2	770 aa	Known RBP	13.7	□□□□□ -0.22
CLK3-222	ENST00000568232	NEK1	Q96PY6	1258 aa		13.7	□□□□□ -0.22
CLK3-222	ENST00000568232	USP26	Q9BXU7	913 aa		13.7	□□□□□ -0.22
CLK3-222	ENST00000568232	AGO3	Q9H9G7	860 aa	Known RBP	13.7	□□□□□ -0.22
CLK3-222	ENST00000568232	CCDC171	Q6TFL3	1326 aa		13.69	□□□□□ -0.22
CLK3-222	ENST00000568232	GVINP1	Q7Z2Y8	2422 aa		13.69	□□□□□ -0.22
CLK3-222	ENST00000568232	NOP56	O00567	594 aa	Known RBP	13.69	□□□□□ -0.22
CLK3-222	ENST00000568232	FGA	P02671	866 aa		13.69	□□□□□ -0.22
CLK3-222	ENST00000568232	TEC	P42680	631 aa		13.69	□□□□□ -0.22
CLK3-222	ENST00000568232	ERVFC1	P60507	584 aa		13.69	□□□□□ -0.22
CLK3-222	ENST00000568232	HAND2	P61296	217 aa		13.69	□□□□□ -0.22
CLK3-222	ENST00000568232	MTMR3	Q13615	1198 aa		13.69	□□□□□ -0.22
CLK3-222	ENST00000568232	DUSP6	Q16828	381 aa		13.69	□□□□□ -0.22
CLK3-222	ENST00000568232	FBXO47	Q5MNV8	452 aa		13.69	□□□□□ -0.22
CLK3-222	ENST00000568232	SYCE2	Q6PIF2	218 aa		13.69	□□□□□ -0.22
CLK3-222	ENST00000568232	STOX1	Q6ZVD7	989 aa		13.69	□□□□□ -0.22
CLK3-222	ENST00000568232	DGLUCY	Q7Z3D6	616 aa		13.69	□□□□□ -0.22
CLK3-222	ENST00000568232	JMJD4	Q9H9V9	463 aa		13.69	□□□□□ -0.22
CLK3-222	ENST00000568232	SORCS3	Q9UPU3	1222 aa		13.69	□□□□□ -0.22
CLK3-222	ENST00000568232	DHX16	O60231	1041 aa	Known RBP	13.68	□□□□□ -0.22
CLK3-222	ENST00000568232	TGFB3	P10600	412 aa		13.68	□□□□□ -0.22
CLK3-222	ENST00000568232	IBSP	P21815	317 aa	Predicted RBP	13.68	□□□□□ -0.22
CLK3-222	ENST00000568232	CD52	P31358	61 aa		13.68	□□□□□ -0.22
CLK3-222	ENST00000568232	ALX1	Q15699	326 aa		13.68	□□□□□ -0.22
CLK3-222	ENST00000568232	MCTP2	Q6DN12	878 aa		13.68	□□□□□ -0.22
CLK3-222	ENST00000568232	ANKRD54	Q6NXT1	300 aa		13.68	□□□□□ -0.22
CLK3-222	ENST00000568232	LLGL2	Q6P1M3	1020 aa		13.68	□□□□□ -0.22
CLK3-222	ENST00000568232	CYFIP1	Q7L576	1253 aa		13.68	□□□□□ -0.22
CLK3-222	ENST00000568232	UBALD2	Q8IYN6	164 aa		13.68	□□□□□ -0.22
CLK3-222	ENST00000568232	PI4K2B	Q8TCG2	481 aa		13.68	□□□□□ -0.22
CLK3-222	ENST00000568232	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.68	□□□□□ -0.22
CLK3-222	ENST00000568232	CNTNAP3B	Q96NU0	1288 aa		13.68	□□□□□ -0.22
CLK3-222	ENST00000568232	GPR20	Q99678	358 aa		13.68	□□□□□ -0.22
CLK3-222	ENST00000568232	CNTNAP3	Q9BZ76	1288 aa		13.68	□□□□□ -0.22
CLK3-222	ENST00000568232	KIAA1671	Q9BY89	1806 aa		13.68	□□□□□ -0.22
CLK3-222	ENST00000568232	KMT2B	Q9UMN6	2715 aa	Predicted RBP	13.67	□□□□□ -0.22
CLK3-222	ENST00000568232	C2CD4D	B7Z1M9	353 aa		13.67	□□□□□ -0.22
CLK3-222	ENST00000568232	ASGR2	P07307	311 aa		13.67	□□□□□ -0.22
CLK3-222	ENST00000568232	SP4	Q02446	784 aa		13.67	□□□□□ -0.22
CLK3-222	ENST00000568232	KCNC3	Q14003	757 aa		13.67	□□□□□ -0.22
CLK3-222	ENST00000568232	TSHZ1	Q6ZSZ6	1077 aa		13.67	□□□□□ -0.22
CLK3-222	ENST00000568232	NPAS4	Q8IUM7	802 aa		13.67	□□□□□ -0.22
CLK3-222	ENST00000568232	PNMA1	Q8ND90	353 aa		13.67	□□□□□ -0.22
CLK3-222	ENST00000568232	DNAJB3	Q8WWF6	145 aa		13.67	□□□□□ -0.22
CLK3-222	ENST00000568232	ZBTB10	Q96DT7	871 aa		13.67	□□□□□ -0.22
CLK3-222	ENST00000568232	CDY2A	Q9Y6F7	541 aa		13.67	□□□□□ -0.22
CLK3-222	ENST00000568232	PLXNA4	Q9HCM2	1894 aa		13.67	□□□□□ -0.22
CLK3-222	ENST00000568232	NRCAM	Q92823	1304 aa		13.66	□□□□□ -0.22
CLK3-222	ENST00000568232	PI15	O43692	258 aa		13.66	□□□□□ -0.22
CLK3-222	ENST00000568232	PPP1R11	O60927	126 aa	Predicted RBP	13.66	□□□□□ -0.22
CLK3-222	ENST00000568232	PYGB	P11216	843 aa		13.66	□□□□□ -0.22
CLK3-222	ENST00000568232	MS4A1	P11836	297 aa		13.66	□□□□□ -0.22
CLK3-222	ENST00000568232	CCND2	P30279	289 aa		13.66	□□□□□ -0.22
CLK3-222	ENST00000568232	APOBR	Q0VD83	1088 aa		13.66	□□□□□ -0.22
CLK3-222	ENST00000568232	TMEM184A	Q6ZMB5	413 aa		13.66	□□□□□ -0.22
CLK3-222	ENST00000568232	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.66	□□□□□ -0.22
CLK3-222	ENST00000568232	TBC1D10C	Q8IV04	446 aa		13.66	□□□□□ -0.22
CLK3-222	ENST00000568232	KIAA2013	Q8IYS2	634 aa		13.66	□□□□□ -0.22
CLK3-222	ENST00000568232	CDCA3	Q99618	268 aa	Predicted RBP	13.66	□□□□□ -0.22
CLK3-222	ENST00000568232	MFSD1	Q9H3U5	465 aa		13.66	□□□□□ -0.22
CLK3-222	ENST00000568232	HCST	Q9UBK5	93 aa		13.66	□□□□□ -0.22
CLK3-222	ENST00000568232	TTC3	P53804	2025 aa		13.66	□□□□□ -0.22
CLK3-222	ENST00000568232	FGF18	O76093	207 aa		13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	CLCN5	P51795	746 aa		13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	MRPS9	P82933	396 aa	Known RBP	13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	GHRHR	Q02643	423 aa		13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	SEMA3F	Q13275	785 aa		13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	SPOUT1	Q5T280	376 aa	Known RBP	13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	PLPP4	Q5VZY2	271 aa		13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	CWF19L1	Q69YN2	538 aa	Known RBP	13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	TAF2	Q6P1X5	1199 aa		13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	METTL7B	Q6UX53	244 aa		13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	MFSD6	Q6ZSS7	791 aa		13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	FCHSD1	Q86WN1	690 aa		13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	FLCN	Q8NFG4	579 aa		13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	KCNG4	Q8TDN1	519 aa		13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	POMK	Q9H5K3	350 aa		13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	TMEM260	Q9NX78	707 aa		13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	RTEL1	Q9NZ71	1219 aa		13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	ZNF215	Q9UL58	517 aa	Predicted RBP	13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	NR2E1	Q9Y466	385 aa		13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	PCDHB12	Q9Y5F1	795 aa		13.65	□□□□□ -0.22
CLK3-222	ENST00000568232	NEDD4	P46934	1319 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	TTC41P	Q6P2S7	1318 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	EPG5	Q9HCE0	2579 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	SPATA31C2	B4DYI2	1134 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	FSCN2	O14926	492 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	WEE2	P0C1S8	567 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	STAG3L1	P0CL83	205 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	SCG2	P13521	617 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	UBE3A	Q05086	875 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	TMEM62	Q0P6H9	643 aa		13.64	□□□□□ -0.23
CLK3-222	ENST00000568232	ANGPT1	Q15389	498 aa		13.64	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms