RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 STXBP3O00186 592 aa21.39■■□□□ 1.01
CLN3-218ENST00000565688 UPP2O95045 317 aa21.39■■□□□ 1.01
CLN3-218ENST00000565688 FGD1P98174 961 aa21.39■■□□□ 1.01
CLN3-218ENST00000565688 AP3B2Q13367 1082 aa21.39■■□□□ 1.01
CLN3-218ENST00000565688 CEP55Q53EZ4 464 aa21.39■■□□□ 1.01
CLN3-218ENST00000565688 TYW1BQ6NUM6 668 aa21.39■■□□□ 1.01
CLN3-218ENST00000565688 SKAP1Q86WV1 359 aa21.39■■□□□ 1.01
CLN3-218ENST00000565688 COL4A6Q14031 1691 aa21.39■■□□□ 1.01
CLN3-218ENST00000565688 CCDC196A0A1B0GTZ2 297 aa21.38■■□□□ 1.01
CLN3-218ENST00000565688 SMCO2A6NFE2 343 aa21.38■■□□□ 1.01
CLN3-218ENST00000565688 PTPROQ16827 1216 aa21.38■■□□□ 1.01
CLN3-218ENST00000565688 MARCH8Q5T0T0 291 aa21.38■■□□□ 1.01
CLN3-218ENST00000565688 ANO3Q9BYT9 981 aa21.38■■□□□ 1.01
CLN3-218ENST00000565688 RBAK-RBAKDNI3L0D1 243 aa21.37■■□□□ 1.01
CLN3-218ENST00000565688 GHRP10912 638 aa21.37■■□□□ 1.01
CLN3-218ENST00000565688 SREBF1P36956 1147 aa21.37■■□□□ 1.01
CLN3-218ENST00000565688 MGAT3Q09327 533 aa21.37■■□□□ 1.01
CLN3-218ENST00000565688 LPIN1Q14693 890 aa21.37■■□□□ 1.01
CLN3-218ENST00000565688 EPC2Q52LR7 807 aa21.37■■□□□ 1.01
CLN3-218ENST00000565688 PLPPR4Q7Z2D5 763 aa21.37■■□□□ 1.01
CLN3-218ENST00000565688 CYP2W1Q8TAV3 490 aa21.37■■□□□ 1.01
CLN3-218ENST00000565688 DNAJB3Q8WWF6 145 aa21.37■■□□□ 1.01
CLN3-218ENST00000565688 MEIS1O00470 390 aa21.36■■□□□ 1.01
CLN3-218ENST00000565688 INSRRP14616 1297 aa21.36■■□□□ 1.01
CLN3-218ENST00000565688 ACTR2P61160 394 aa21.36■■□□□ 1.01
CLN3-218ENST00000565688 NIPA1Q7RTP0 329 aa21.36■■□□□ 1.01
CLN3-218ENST00000565688 MRPL38Q96DV4 380 aaKnown RBP21.36■■□□□ 1.01
CLN3-218ENST00000565688 IL17RAQ96F46 866 aa21.36■■□□□ 1.01
CLN3-218ENST00000565688 PGBD1Q96JS3 809 aa21.36■■□□□ 1.01
CLN3-218ENST00000565688 NECAB3Q96P71 396 aaPredicted RBP21.36■■□□□ 1.01
CLN3-218ENST00000565688 PCYT2Q99447 389 aa21.36■■□□□ 1.01
CLN3-218ENST00000565688 AGO4Q9HCK5 861 aaKnown RBP21.36■■□□□ 1.01
CLN3-218ENST00000565688 FAM217BQ9NTX9 383 aaPredicted RBP21.36■■□□□ 1.01
CLN3-218ENST00000565688 NAP1L2Q9ULW6 460 aaPredicted RBP21.36■■□□□ 1.01
CLN3-218ENST00000565688 TRPC6Q9Y210 931 aa21.36■■□□□ 1.01
CLN3-218ENST00000565688 ARP10275 920 aa21.35■■□□□ 1.01
CLN3-218ENST00000565688 CDC27P30260 824 aa21.35■■□□□ 1.01
CLN3-218ENST00000565688 ZNF76P36508 570 aa21.35■■□□□ 1.01
CLN3-218ENST00000565688 CLK2P49760 499 aaKnown RBP21.35■■□□□ 1.01
CLN3-218ENST00000565688 SLC26A2P50443 739 aa21.35■■□□□ 1.01
CLN3-218ENST00000565688 METAP2P50579 478 aaKnown RBP eCLIP21.35■■□□□ 1.01
CLN3-218ENST00000565688 STAT5BP51692 787 aa21.35■■□□□ 1.01
CLN3-218ENST00000565688 IGBP1P78318 339 aa21.35■■□□□ 1.01
CLN3-218ENST00000565688 MRPS6P82932 125 aaKnown RBP21.35■■□□□ 1.01
CLN3-218ENST00000565688 PFKFB3Q16875 520 aaPredicted RBP21.35■■□□□ 1.01
CLN3-218ENST00000565688 FBXO47Q5MNV8 452 aa21.35■■□□□ 1.01
CLN3-218ENST00000565688 IER5Q5VY09 327 aa21.35■■□□□ 1.01
CLN3-218ENST00000565688 MCTP2Q6DN12 878 aa21.35■■□□□ 1.01
CLN3-218ENST00000565688 TSHZ1Q6ZSZ6 1077 aa21.35■■□□□ 1.01
CLN3-218ENST00000565688 TMEM192Q8IY95 271 aa21.35■■□□□ 1.01
CLN3-218ENST00000565688 CDY2AQ9Y6F7 541 aa21.35■■□□□ 1.01
CLN3-218ENST00000565688 TCF20Q9UGU0 1960 aaKnown RBP21.35■■□□□ 1.01
CLN3-218ENST00000565688 H3BNC9 293 aa21.34■■□□□ 1.01
CLN3-218ENST00000565688 ITGB3BPQ13352 177 aaPredicted RBP21.34■■□□□ 1.01
CLN3-218ENST00000565688 CCDC12Q8WUD4 166 aaPredicted RBP21.34■■□□□ 1.01
CLN3-218ENST00000565688 KCNB2Q92953 911 aa21.34■■□□□ 1.01
CLN3-218ENST00000565688 TMEM260Q9NX78 707 aa21.34■■□□□ 1.01
CLN3-218ENST00000565688 SQORQ9Y6N5 450 aa21.34■■□□□ 1.01
CLN3-218ENST00000565688 M0QZ92 97 aa21.33■■□□□ 1.01
CLN3-218ENST00000565688 ATG7O95352 703 aa21.33■■□□□ 1.01
CLN3-218ENST00000565688 SCG2P13521 617 aa21.33■■□□□ 1.01
CLN3-218ENST00000565688 ADD1P35611 737 aaKnown RBP21.33■■□□□ 1.01
CLN3-218ENST00000565688 GPM6BQ13491 265 aa21.33■■□□□ 1.01
CLN3-218ENST00000565688 PLCB4Q15147 1175 aa21.33■■□□□ 1.01
CLN3-218ENST00000565688 TIGD5Q53EQ6 642 aa21.33■■□□□ 1.01
CLN3-218ENST00000565688 FIBCD1Q8N539 461 aa21.33■■□□□ 1.01
CLN3-218ENST00000565688 FAM49AQ9H0Q0 323 aaPredicted RBP21.33■■□□□ 1.01
CLN3-218ENST00000565688 UBE2ZQ9H832 354 aaPredicted RBP21.33■■□□□ 1.01
CLN3-218ENST00000565688 RWDD3Q9Y3V2 267 aa21.33■■□□□ 1.01
CLN3-218ENST00000565688 PCDHA2Q9Y5H9 948 aa21.33■■□□□ 1.01
CLN3-218ENST00000565688 BRWD1Q9NSI6 2320 aa21.33■■□□□ 1
CLN3-218ENST00000565688 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.32■■□□□ 1
CLN3-218ENST00000565688 ESYT2A0FGR8 921 aa21.32■■□□□ 1
CLN3-218ENST00000565688 POTEB3A0JP26 581 aa21.32■■□□□ 1
CLN3-218ENST00000565688 ENPP3O14638 875 aa21.32■■□□□ 1
CLN3-218ENST00000565688 HSPA4P34932 840 aa21.32■■□□□ 1
CLN3-218ENST00000565688 FAM160B1Q5W0V3 765 aa21.32■■□□□ 1
CLN3-218ENST00000565688 BLOC1S2Q6QNY1 142 aa21.32■■□□□ 1
CLN3-218ENST00000565688 POTEBQ6S5H4 581 aa21.32■■□□□ 1
CLN3-218ENST00000565688 Q6ZUG5 572 aa21.32■■□□□ 1
CLN3-218ENST00000565688 FBXL16Q8N461 479 aa21.32■■□□□ 1
CLN3-218ENST00000565688 JAKMIP1Q96N16 626 aaKnown RBP21.32■■□□□ 1
CLN3-218ENST00000565688 FTHL17Q9BXU8 183 aa21.32■■□□□ 1
CLN3-218ENST00000565688 IGKV6D-21A0A0A0MT36 114 aa21.31■■□□□ 1
CLN3-218ENST00000565688 CYP3A4P08684 503 aa21.31■■□□□ 1
CLN3-218ENST00000565688 APOBRQ0VD83 1088 aa21.31■■□□□ 1
CLN3-218ENST00000565688 JAKMIP3Q5VZ66 844 aa21.31■■□□□ 1
CLN3-218ENST00000565688 FAM43BQ6ZT52 329 aaPredicted RBP21.31■■□□□ 1
CLN3-218ENST00000565688 PLA2G4DQ86XP0 818 aa21.31■■□□□ 1
CLN3-218ENST00000565688 NME8Q8N427 588 aa21.31■■□□□ 1
CLN3-218ENST00000565688 BRF1Q92994 677 aa21.31■■□□□ 1
CLN3-218ENST00000565688 C1QTNF1Q9BXJ1 281 aa21.31■■□□□ 1
CLN3-218ENST00000565688 ZMYND12Q9H0C1 365 aa21.31■■□□□ 1
CLN3-218ENST00000565688 C6orf50Q9HD87 102 aa21.31■■□□□ 1
CLN3-218ENST00000565688 TRPV2Q9Y5S1 764 aa21.31■■□□□ 1
CLN3-218ENST00000565688 ADGRA3Q8IWK6 1321 aa21.3■■□□□ 1
CLN3-218ENST00000565688 SMIM35A0A1B0GVV1 85 aa21.3■■□□□ 1
CLN3-218ENST00000565688 BACH1O14867 736 aa21.3■■□□□ 1
CLN3-218ENST00000565688 RB1P06400 928 aa21.3■■□□□ 1
CLN3-218ENST00000565688 CPA1P15085 419 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms