RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 CCT6AP40227 531 aaKnown RBP23.14■■□□□ 1.29
CLN3-212ENST00000564574 HYIQ5T013 277 aa23.14■■□□□ 1.29
CLN3-212ENST00000564574 RNF180Q86T96 592 aa23.14■■□□□ 1.29
CLN3-212ENST00000564574 KLHDC9Q8NEP7 349 aa23.14■■□□□ 1.29
CLN3-212ENST00000564574 ATP6V0A1Q93050 837 aa23.14■■□□□ 1.29
CLN3-212ENST00000564574 DYDC2Q96IM9 177 aa23.14■■□□□ 1.29
CLN3-212ENST00000564574 MMTAG2Q9BU76 263 aaKnown RBP23.14■■□□□ 1.29
CLN3-212ENST00000564574 AZI2Q9H6S1 392 aa23.14■■□□□ 1.29
CLN3-212ENST00000564574 ZNF302Q9NR11 478 aa23.14■■□□□ 1.29
CLN3-212ENST00000564574 CCDC39Q9UFE4 941 aa23.14■■□□□ 1.29
CLN3-212ENST00000564574 IGSF9BQ9UPX0 1349 aa23.13■■□□□ 1.29
CLN3-212ENST00000564574 BACH1O14867 736 aa23.13■■□□□ 1.29
CLN3-212ENST00000564574 PRPF40AO75400 957 aaKnown RBP23.13■■□□□ 1.29
CLN3-212ENST00000564574 PGK1P00558 417 aa23.13■■□□□ 1.29
CLN3-212ENST00000564574 CAPN2P17655 700 aa23.13■■□□□ 1.29
CLN3-212ENST00000564574 QARSP47897 775 aaKnown RBP23.13■■□□□ 1.29
CLN3-212ENST00000564574 PSMC5P62195 406 aa23.13■■□□□ 1.29
CLN3-212ENST00000564574 UBE2HP62256 183 aa23.13■■□□□ 1.29
CLN3-212ENST00000564574 SPECC1Q5M775 1068 aa23.13■■□□□ 1.29
CLN3-212ENST00000564574 SWSAP1Q6NVH7 229 aa23.13■■□□□ 1.29
CLN3-212ENST00000564574 PLPPR4Q7Z2D5 763 aa23.13■■□□□ 1.29
CLN3-212ENST00000564574 CCDC60Q8IWA6 550 aaPredicted RBP23.13■■□□□ 1.29
CLN3-212ENST00000564574 PCSK9Q8NBP7 692 aaKnown RBP23.13■■□□□ 1.29
CLN3-212ENST00000564574 ARRDC4Q8NCT1 418 aa23.13■■□□□ 1.29
CLN3-212ENST00000564574 MRPS27Q92552 414 aaKnown RBP23.13■■□□□ 1.29
CLN3-212ENST00000564574 CALML4Q96GE6 196 aa23.13■■□□□ 1.29
CLN3-212ENST00000564574 EPSTI1Q96J88 318 aa23.13■■□□□ 1.29
CLN3-212ENST00000564574 NT5C3AQ9H0P0 336 aa23.13■■□□□ 1.29
CLN3-212ENST00000564574 SMARCAD1Q9H4L7 1026 aa23.13■■□□□ 1.29
CLN3-212ENST00000564574 GABBR1Q9UBS5 961 aa23.13■■□□□ 1.29
CLN3-212ENST00000564574 FAM237AA0A1B0GTK4 181 aa23.12■■□□□ 1.29
CLN3-212ENST00000564574 SLITRK3O94933 977 aa23.12■■□□□ 1.29
CLN3-212ENST00000564574 LGALS2P05162 132 aa23.12■■□□□ 1.29
CLN3-212ENST00000564574 CDC25AP30304 524 aa23.12■■□□□ 1.29
CLN3-212ENST00000564574 SLC26A2P50443 739 aa23.12■■□□□ 1.29
CLN3-212ENST00000564574 STAT5BP51692 787 aa23.12■■□□□ 1.29
CLN3-212ENST00000564574 GNASQ5JWF2 1037 aa23.12■■□□□ 1.29
CLN3-212ENST00000564574 CATSPER3Q86XQ3 398 aa23.12■■□□□ 1.29
CLN3-212ENST00000564574 CDK5RAP3Q96JB5 506 aa23.12■■□□□ 1.29
CLN3-212ENST00000564574 PYM1Q9BRP8 204 aaKnown RBP23.12■■□□□ 1.29
CLN3-212ENST00000564574 LXNQ9BS40 222 aa23.12■■□□□ 1.29
CLN3-212ENST00000564574 ZSWIM4Q9H7M6 989 aa23.12■■□□□ 1.29
CLN3-212ENST00000564574 MAFBQ9Y5Q3 323 aaPredicted RBP23.12■■□□□ 1.29
CLN3-212ENST00000564574 MED24O75448 989 aa23.11■■□□□ 1.29
CLN3-212ENST00000564574 LYPLA2O95372 231 aa23.11■■□□□ 1.29
CLN3-212ENST00000564574 GJB1P08034 283 aa23.11■■□□□ 1.29
CLN3-212ENST00000564574 SPATA31C1P0DKV0 1188 aa23.11■■□□□ 1.29
CLN3-212ENST00000564574 MCM4P33991 863 aa23.11■■□□□ 1.29
CLN3-212ENST00000564574 BEX3Q00994 111 aa23.11■■□□□ 1.29
CLN3-212ENST00000564574 CYP4A11Q02928 519 aa23.11■■□□□ 1.29
CLN3-212ENST00000564574 UTP14CQ5TAP6 766 aaKnown RBP23.11■■□□□ 1.29
CLN3-212ENST00000564574 USP49Q70CQ1 688 aa23.11■■□□□ 1.29
CLN3-212ENST00000564574 C4orf19Q8IY42 314 aa23.11■■□□□ 1.29
CLN3-212ENST00000564574 BANK1Q8NDB2 785 aa23.11■■□□□ 1.29
CLN3-212ENST00000564574 DEFB118Q96PH6 123 aa23.11■■□□□ 1.29
CLN3-212ENST00000564574 PCYT2Q99447 389 aa23.11■■□□□ 1.29
CLN3-212ENST00000564574 TSEN34Q9BSV6 310 aaKnown RBP23.11■■□□□ 1.29
CLN3-212ENST00000564574 LMBRD1Q9NUN5 540 aa23.11■■□□□ 1.29
CLN3-212ENST00000564574 RGL1Q9NZL6 768 aa23.11■■□□□ 1.29
CLN3-212ENST00000564574 ZNF215Q9UL58 517 aaPredicted RBP23.11■■□□□ 1.29
CLN3-212ENST00000564574 MYADML2A6NDP7 307 aa23.1■■□□□ 1.29
CLN3-212ENST00000564574 RGS19P49795 217 aa23.1■■□□□ 1.29
CLN3-212ENST00000564574 CTTNQ14247 550 aaKnown RBP23.1■■□□□ 1.29
CLN3-212ENST00000564574 LRRC41Q15345 812 aa23.1■■□□□ 1.29
CLN3-212ENST00000564574 CCSAPQ6IQ19 270 aaPredicted RBP23.1■■□□□ 1.29
CLN3-212ENST00000564574 PDXDC2PQ6P474 469 aa23.1■■□□□ 1.29
CLN3-212ENST00000564574 TPH2Q8IWU9 490 aa23.1■■□□□ 1.29
CLN3-212ENST00000564574 FSIP1Q8NA03 581 aa23.1■■□□□ 1.29
CLN3-212ENST00000564574 RASSF8Q8NHQ8 419 aa23.1■■□□□ 1.29
CLN3-212ENST00000564574 GLG1Q92896 1179 aa23.1■■□□□ 1.29
CLN3-212ENST00000564574 ERAP1Q9NZ08 941 aa23.1■■□□□ 1.29
CLN3-212ENST00000564574 OGDHLQ9ULD0 1010 aa23.1■■□□□ 1.29
CLN3-212ENST00000564574 HPSEQ9Y251 543 aa23.1■■□□□ 1.29
CLN3-212ENST00000564574 POTEB3A0JP26 581 aa23.09■■□□□ 1.29
CLN3-212ENST00000564574 DDX11L8A8MPP1 907 aa23.09■■□□□ 1.29
CLN3-212ENST00000564574 GADD45BO75293 160 aaPredicted RBP23.09■■□□□ 1.29
CLN3-212ENST00000564574 MYCP01106 439 aaPredicted RBP23.09■■□□□ 1.29
CLN3-212ENST00000564574 MYL3P08590 195 aa23.09■■□□□ 1.29
CLN3-212ENST00000564574 PFKFB1P16118 471 aa23.09■■□□□ 1.29
CLN3-212ENST00000564574 PTMSP20962 102 aa23.09■■□□□ 1.29
CLN3-212ENST00000564574 GRB10Q13322 594 aa23.09■■□□□ 1.29
CLN3-212ENST00000564574 UGCGQ16739 394 aa23.09■■□□□ 1.29
CLN3-212ENST00000564574 TMEM119Q4V9L6 283 aa23.09■■□□□ 1.29
CLN3-212ENST00000564574 POTEBQ6S5H4 581 aa23.09■■□□□ 1.29
CLN3-212ENST00000564574 CCDC73Q6ZRK6 1079 aa23.09■■□□□ 1.29
CLN3-212ENST00000564574 FAM167AQ96KS9 214 aa23.09■■□□□ 1.29
CLN3-212ENST00000564574 PNMA5Q96PV4 448 aa23.09■■□□□ 1.29
CLN3-212ENST00000564574 C16orf70Q9BSU1 422 aa23.09■■□□□ 1.29
CLN3-212ENST00000564574 KATNAL1Q9BW62 490 aa23.09■■□□□ 1.29
CLN3-212ENST00000564574 A0A1B0GVL5 298 aa23.08■■□□□ 1.29
CLN3-212ENST00000564574 MOXD2PA6NHM9 499 aa23.08■■□□□ 1.29
CLN3-212ENST00000564574 SGPL1O95470 568 aa23.08■■□□□ 1.29
CLN3-212ENST00000564574 F2P00734 622 aa23.08■■□□□ 1.29
CLN3-212ENST00000564574 XRCC6P12956 609 aaKnown RBP eCLIP23.08■■□□□ 1.29
CLN3-212ENST00000564574 IRX5P78411 483 aaPredicted RBP23.08■■□□□ 1.29
CLN3-212ENST00000564574 PURAQ00577 322 aaKnown RBP23.08■■□□□ 1.29
CLN3-212ENST00000564574 MLLT1Q03111 559 aaPredicted RBP23.08■■□□□ 1.29
CLN3-212ENST00000564574 KARSQ15046 597 aaKnown RBP23.08■■□□□ 1.29
CLN3-212ENST00000564574 NACC1Q96RE7 527 aa23.08■■□□□ 1.29
CLN3-212ENST00000564574 MTG1Q9BT17 334 aaPredicted RBP23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms