RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 KCNJ6P48051 423 aa17.79■□□□□ 0.44
VPS39-203ENST00000561797 STAT5BP51692 787 aa17.79■□□□□ 0.44
VPS39-203ENST00000561797 BLIDQ8IZY5 108 aa17.79■□□□□ 0.44
VPS39-203ENST00000561797 NECAB1Q8N987 351 aa17.79■□□□□ 0.44
VPS39-203ENST00000561797 IL17RAQ96F46 866 aa17.79■□□□□ 0.44
VPS39-203ENST00000561797 SLC9A7Q96T83 725 aa17.79■□□□□ 0.44
VPS39-203ENST00000561797 SLC28A3Q9HAS3 691 aa17.79■□□□□ 0.44
VPS39-203ENST00000561797 KCNJ14Q9UNX9 436 aa17.79■□□□□ 0.44
VPS39-203ENST00000561797 TRPC6Q9Y210 931 aa17.79■□□□□ 0.44
VPS39-203ENST00000561797 DHX15O43143 795 aaKnown RBP17.78■□□□□ 0.44
VPS39-203ENST00000561797 ATG7O95352 703 aa17.78■□□□□ 0.44
VPS39-203ENST00000561797 LARGE1O95461 756 aa17.78■□□□□ 0.44
VPS39-203ENST00000561797 INSRRP14616 1297 aa17.78■□□□□ 0.44
VPS39-203ENST00000561797 CIITAP33076 1130 aa17.78■□□□□ 0.44
VPS39-203ENST00000561797 SETQ01105 290 aaPredicted RBP17.78■□□□□ 0.44
VPS39-203ENST00000561797 RUFY4Q6ZNE9 571 aa17.78■□□□□ 0.44
VPS39-203ENST00000561797 TBCKQ8TEA7 893 aa17.78■□□□□ 0.44
VPS39-203ENST00000561797 TUBE1Q9UJT0 475 aa17.78■□□□□ 0.44
VPS39-203ENST00000561797 PCDHA11Q9Y5I1 949 aa17.78■□□□□ 0.44
VPS39-203ENST00000561797 BACH1O14867 736 aa17.77■□□□□ 0.44
VPS39-203ENST00000561797 EDIL3O43854 480 aa17.77■□□□□ 0.44
VPS39-203ENST00000561797 CTDNEP1O95476 244 aa17.77■□□□□ 0.44
VPS39-203ENST00000561797 FOSL2P15408 326 aa17.77■□□□□ 0.44
VPS39-203ENST00000561797 USP11P51784 963 aa17.77■□□□□ 0.44
VPS39-203ENST00000561797 WDR5P61964 334 aaKnown RBP17.77■□□□□ 0.44
VPS39-203ENST00000561797 IKBKEQ14164 716 aa17.77■□□□□ 0.44
VPS39-203ENST00000561797 PLCB4Q15147 1175 aa17.77■□□□□ 0.44
VPS39-203ENST00000561797 ME3Q16798 604 aa17.77■□□□□ 0.44
VPS39-203ENST00000561797 ABHD15Q6UXT9 468 aa17.77■□□□□ 0.44
VPS39-203ENST00000561797 PLPPR4Q7Z2D5 763 aa17.77■□□□□ 0.44
VPS39-203ENST00000561797 TMCO2Q7Z6W1 182 aaPredicted RBP17.77■□□□□ 0.44
VPS39-203ENST00000561797 DBF4BQ8NFT6 615 aa17.77■□□□□ 0.44
VPS39-203ENST00000561797 PHOSPHO2Q8TCD6 241 aa17.77■□□□□ 0.44
VPS39-203ENST00000561797 ZBTB10Q96DT7 871 aa17.77■□□□□ 0.44
VPS39-203ENST00000561797 OSBPL7Q9BZF2 842 aa17.77■□□□□ 0.44
VPS39-203ENST00000561797 TBC1D22BQ9NU19 505 aa17.77■□□□□ 0.44
VPS39-203ENST00000561797 ORC3Q9UBD5 711 aaPredicted RBP17.77■□□□□ 0.44
VPS39-203ENST00000561797 STK36Q9NRP7 1315 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 ABHD14A-ACY1A0A1B0GW23 586 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 CAND2O75155 1236 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 DEFB103AP81534 67 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 NPY5RQ15761 445 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 MARCH8Q5T0T0 291 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 FAM160B1Q5W0V3 765 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 SWSAP1Q6NVH7 229 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 MIS18BP1Q6P0N0 1132 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 HERC6Q8IVU3 1022 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 DAGLBQ8NCG7 672 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 TRAPPC12Q8WVT3 735 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 DNAJB3Q8WWF6 145 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 C22orf23Q9BZE7 217 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 PRDM12Q9H4Q4 367 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 ZNF302Q9NR11 478 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 GJB4Q9NTQ9 266 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 TCEAL9Q9UHQ7 104 aa17.76■□□□□ 0.43
VPS39-203ENST00000561797 IGKV6D-21A0A0A0MT36 114 aa17.75■□□□□ 0.43
VPS39-203ENST00000561797 POTEB3A0JP26 581 aa17.75■□□□□ 0.43
VPS39-203ENST00000561797 MBLAC1A4D2B0 266 aaPredicted RBP17.75■□□□□ 0.43
VPS39-203ENST00000561797 RRN3P2A6NIE6 340 aa17.75■□□□□ 0.43
VPS39-203ENST00000561797 M0R2N6 131 aa17.75■□□□□ 0.43
VPS39-203ENST00000561797 XBP1P17861 261 aa17.75■□□□□ 0.43
VPS39-203ENST00000561797 C8orf34Q49A92 452 aa17.75■□□□□ 0.43
VPS39-203ENST00000561797 PPP2R2DQ66LE6 453 aa17.75■□□□□ 0.43
VPS39-203ENST00000561797 GALNT17Q6IS24 598 aa17.75■□□□□ 0.43
VPS39-203ENST00000561797 TAF2Q6P1X5 1199 aa17.75■□□□□ 0.43
VPS39-203ENST00000561797 POTEBQ6S5H4 581 aa17.75■□□□□ 0.43
VPS39-203ENST00000561797 RSPH3Q86UC2 560 aa17.75■□□□□ 0.43
VPS39-203ENST00000561797 CCDC60Q8IWA6 550 aaPredicted RBP17.75■□□□□ 0.43
VPS39-203ENST00000561797 FAM177A1Q8N128 213 aaPredicted RBP17.75■□□□□ 0.43
VPS39-203ENST00000561797 SLC17A8Q8NDX2 589 aa17.75■□□□□ 0.43
VPS39-203ENST00000561797 TNPO1Q92973 898 aaKnown RBP17.75■□□□□ 0.43
VPS39-203ENST00000561797 LENG9Q96B70 501 aa17.75■□□□□ 0.43
VPS39-203ENST00000561797 PHF20Q9BVI0 1012 aa17.75■□□□□ 0.43
VPS39-203ENST00000561797 KIF28PB7ZC32 967 aa17.74■□□□□ 0.43
VPS39-203ENST00000561797 MSH4O15457 936 aa17.74■□□□□ 0.43
VPS39-203ENST00000561797 CHRNA1P02708 482 aa17.74■□□□□ 0.43
VPS39-203ENST00000561797 CA3P07451 260 aa17.74■□□□□ 0.43
VPS39-203ENST00000561797 KRT76Q01546 638 aa17.74■□□□□ 0.43
VPS39-203ENST00000561797 NONOQ15233 471 aaKnown RBP eCLIP17.74■□□□□ 0.43
VPS39-203ENST00000561797 PLEKHG4Q58EX7 1191 aa17.74■□□□□ 0.43
VPS39-203ENST00000561797 FAM26DQ5JW98 314 aa17.74■□□□□ 0.43
VPS39-203ENST00000561797 ZNF746Q6NUN9 644 aaPredicted RBP17.74■□□□□ 0.43
VPS39-203ENST00000561797 PDXDC2PQ6P474 469 aa17.74■□□□□ 0.43
VPS39-203ENST00000561797 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.74■□□□□ 0.43
VPS39-203ENST00000561797 TRMT1LQ7Z2T5 733 aaKnown RBP17.74■□□□□ 0.43
VPS39-203ENST00000561797 MAFAQ8NHW3 353 aaPredicted RBP17.74■□□□□ 0.43
VPS39-203ENST00000561797 SEPT8Q92599 483 aa17.74■□□□□ 0.43
VPS39-203ENST00000561797 GTF3C6Q969F1 213 aa17.74■□□□□ 0.43
VPS39-203ENST00000561797 GJA10Q969M2 543 aa17.74■□□□□ 0.43
VPS39-203ENST00000561797 ZBED2Q9BTP6 218 aa17.74■□□□□ 0.43
VPS39-203ENST00000561797 FAM49AQ9H0Q0 323 aaPredicted RBP17.74■□□□□ 0.43
VPS39-203ENST00000561797 SAMM50Q9Y512 469 aa17.74■□□□□ 0.43
VPS39-203ENST00000561797 TLL1O43897 1013 aa17.73■□□□□ 0.43
VPS39-203ENST00000561797 EFCAB14O75071 495 aa17.73■□□□□ 0.43
VPS39-203ENST00000561797 TDP2O95551 362 aa17.73■□□□□ 0.43
VPS39-203ENST00000561797 PSAPP07602 524 aa17.73■□□□□ 0.43
VPS39-203ENST00000561797 FDPSP14324 419 aaKnown RBP17.73■□□□□ 0.43
VPS39-203ENST00000561797 SLC26A2P50443 739 aa17.73■□□□□ 0.43
VPS39-203ENST00000561797 INF2Q27J81 1249 aa17.73■□□□□ 0.43
VPS39-203ENST00000561797 FAM117BQ6P1L5 589 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms