RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 TYW1BQ6NUM6 668 aa13.35□□□□□ -0.27
USP3-220ENST00000561381 SGMS1Q86VZ5 419 aa13.35□□□□□ -0.27
USP3-220ENST00000561381 ZBTB10Q96DT7 871 aa13.35□□□□□ -0.27
USP3-220ENST00000561381 BRPF3Q9ULD4 1205 aa13.35□□□□□ -0.27
USP3-220ENST00000561381 NRCAMQ92823 1304 aa13.35□□□□□ -0.27
USP3-220ENST00000561381 SPDYE3A6NKU9 549 aa13.34□□□□□ -0.27
USP3-220ENST00000561381 PPFIA1Q13136 1202 aa13.34□□□□□ -0.27
USP3-220ENST00000561381 ADCK5Q3MIX3 580 aa13.34□□□□□ -0.27
USP3-220ENST00000561381 FAM26DQ5JW98 314 aa13.34□□□□□ -0.27
USP3-220ENST00000561381 APOA5Q6Q788 366 aa13.34□□□□□ -0.27
USP3-220ENST00000561381 PDCD7Q8N8D1 485 aaKnown RBP13.34□□□□□ -0.27
USP3-220ENST00000561381 GIMAP8Q8ND71 665 aaPredicted RBP13.34□□□□□ -0.27
USP3-220ENST00000561381 FBXO22Q8NEZ5 403 aa13.34□□□□□ -0.27
USP3-220ENST00000561381 CYP2W1Q8TAV3 490 aa13.34□□□□□ -0.27
USP3-220ENST00000561381 SEPT1Q8WYJ6 367 aa13.34□□□□□ -0.27
USP3-220ENST00000561381 TOP1MTQ969P6 601 aa13.34□□□□□ -0.27
USP3-220ENST00000561381 CDHR1Q96JP9 859 aa13.34□□□□□ -0.27
USP3-220ENST00000561381 PGBD1Q96JS3 809 aa13.34□□□□□ -0.27
USP3-220ENST00000561381 YME1L1Q96TA2 773 aa13.34□□□□□ -0.27
USP3-220ENST00000561381 IFIH1Q9BYX4 1025 aaKnown RBP13.34□□□□□ -0.27
USP3-220ENST00000561381 JADE2Q9NQC1 790 aa13.34□□□□□ -0.27
USP3-220ENST00000561381 LMCD1Q9NZU5 365 aa13.34□□□□□ -0.27
USP3-220ENST00000561381 RAPGEFL1Q9UHV5 662 aa13.34□□□□□ -0.27
USP3-220ENST00000561381 CNTNAP5Q8WYK1 1306 aa13.34□□□□□ -0.27
USP3-220ENST00000561381 GHRP10912 638 aa13.33□□□□□ -0.28
USP3-220ENST00000561381 COL9A1P20849 921 aa13.33□□□□□ -0.28
USP3-220ENST00000561381 EXOSC10Q01780 885 aaKnown RBP13.33□□□□□ -0.28
USP3-220ENST00000561381 FUT2Q10981 343 aa13.33□□□□□ -0.28
USP3-220ENST00000561381 GRIK4Q16099 956 aa13.33□□□□□ -0.28
USP3-220ENST00000561381 EPC2Q52LR7 807 aa13.33□□□□□ -0.28
USP3-220ENST00000561381 BMP2KLQ5H9B9 411 aa13.33□□□□□ -0.28
USP3-220ENST00000561381 MARCH8Q5T0T0 291 aa13.33□□□□□ -0.28
USP3-220ENST00000561381 GLG1Q92896 1179 aa13.33□□□□□ -0.28
USP3-220ENST00000561381 NEK1Q96PY6 1258 aa13.33□□□□□ -0.28
USP3-220ENST00000561381 PCYT2Q99447 389 aa13.33□□□□□ -0.28
USP3-220ENST00000561381 ERAP1Q9NZ08 941 aa13.33□□□□□ -0.28
USP3-220ENST00000561381 NAPAP54920 295 aa13.32□□□□□ -0.28
USP3-220ENST00000561381 IGBP1P78318 339 aa13.32□□□□□ -0.28
USP3-220ENST00000561381 MGAT3Q09327 533 aa13.32□□□□□ -0.28
USP3-220ENST00000561381 LPIN1Q14693 890 aa13.32□□□□□ -0.28
USP3-220ENST00000561381 RTN1Q16799 776 aa13.32□□□□□ -0.28
USP3-220ENST00000561381 TAF2Q6P1X5 1199 aa13.32□□□□□ -0.28
USP3-220ENST00000561381 SYNE3Q6ZMZ3 975 aa13.32□□□□□ -0.28
USP3-220ENST00000561381 DNAJB3Q8WWF6 145 aa13.32□□□□□ -0.28
USP3-220ENST00000561381 MXRA8Q9BRK3 442 aa13.32□□□□□ -0.28
USP3-220ENST00000561381 EHMT1Q9H9B1 1298 aa13.32□□□□□ -0.28
USP3-220ENST00000561381 KCNH7Q9NS40 1196 aa13.32□□□□□ -0.28
USP3-220ENST00000561381 FAM217BQ9NTX9 383 aaPredicted RBP13.32□□□□□ -0.28
USP3-220ENST00000561381 TUBE1Q9UJT0 475 aa13.32□□□□□ -0.28
USP3-220ENST00000561381 V9GY48 417 aaPredicted RBP13.32□□□□□ -0.28
USP3-220ENST00000561381 MYO7AQ13402 2215 aa13.31□□□□□ -0.28
USP3-220ENST00000561381 MBLAC1A4D2B0 266 aaPredicted RBP13.31□□□□□ -0.28
USP3-220ENST00000561381 STXBP3O00186 592 aa13.31□□□□□ -0.28
USP3-220ENST00000561381 ZBTB43O43298 467 aa13.31□□□□□ -0.28
USP3-220ENST00000561381 ARP10275 920 aa13.31□□□□□ -0.28
USP3-220ENST00000561381 RNF20Q5VTR2 975 aa13.31□□□□□ -0.28
USP3-220ENST00000561381 DHX32Q7L7V1 743 aaKnown RBP13.31□□□□□ -0.28
USP3-220ENST00000561381 RPAINQ86UA6 219 aa13.31□□□□□ -0.28
USP3-220ENST00000561381 APBB2Q92870 758 aa13.31□□□□□ -0.28
USP3-220ENST00000561381 SMARCAD1Q9H4L7 1026 aa13.31□□□□□ -0.28
USP3-220ENST00000561381 UBE2ZQ9H832 354 aaPredicted RBP13.31□□□□□ -0.28
USP3-220ENST00000561381 JPH1Q9HDC5 661 aaPredicted RBP13.31□□□□□ -0.28
USP3-220ENST00000561381 RIC8AQ9NPQ8 531 aa13.31□□□□□ -0.28
USP3-220ENST00000561381 RBM28Q9NW13 759 aaKnown RBP13.31□□□□□ -0.28
USP3-220ENST00000561381 TMEM260Q9NX78 707 aa13.31□□□□□ -0.28
USP3-220ENST00000561381 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.31□□□□□ -0.28
USP3-220ENST00000561381 CDY2AQ9Y6F7 541 aa13.31□□□□□ -0.28
USP3-220ENST00000561381 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.3□□□□□ -0.28
USP3-220ENST00000561381 MAFGO15525 162 aa13.3□□□□□ -0.28
USP3-220ENST00000561381 INSRRP14616 1297 aa13.3□□□□□ -0.28
USP3-220ENST00000561381 CPA1P15085 419 aa13.3□□□□□ -0.28
USP3-220ENST00000561381 CDC27P30260 824 aa13.3□□□□□ -0.28
USP3-220ENST00000561381 ADCY7P51828 1080 aa13.3□□□□□ -0.28
USP3-220ENST00000561381 ITGB3BPQ13352 177 aaPredicted RBP13.3□□□□□ -0.28
USP3-220ENST00000561381 TSGA10IPQ3SY00 556 aa13.3□□□□□ -0.28
USP3-220ENST00000561381 FBXO47Q5MNV8 452 aa13.3□□□□□ -0.28
USP3-220ENST00000561381 CENPQQ7L2Z9 268 aaPredicted RBP13.3□□□□□ -0.28
USP3-220ENST00000561381 TMEM192Q8IY95 271 aa13.3□□□□□ -0.28
USP3-220ENST00000561381 TRAPPC12Q8WVT3 735 aa13.3□□□□□ -0.28
USP3-220ENST00000561381 KHSRPQ92945 711 aaKnown RBP eCLIP13.3□□□□□ -0.285e-8■□□□□ 8.5
USP3-220ENST00000561381 MRPL38Q96DV4 380 aaKnown RBP13.3□□□□□ -0.28
USP3-220ENST00000561381 ANO3Q9BYT9 981 aa13.3□□□□□ -0.28
USP3-220ENST00000561381 FAM49AQ9H0Q0 323 aaPredicted RBP13.3□□□□□ -0.28
USP3-220ENST00000561381 EPHX3Q9H6B9 360 aa13.3□□□□□ -0.28
USP3-220ENST00000561381 AGO3Q9H9G7 860 aaKnown RBP13.3□□□□□ -0.28
USP3-220ENST00000561381 SLC9A2Q9UBY0 812 aa13.3□□□□□ -0.28
USP3-220ENST00000561381 KLF18A0A0U1RQI7 1052 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 SMCO2A6NFE2 343 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 GOLGA8AA7E2F4 631 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 GOLGA8BA8MQT2 603 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 H3BNC9 293 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 ENPP3O14638 875 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 ADAMTS3O15072 1205 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 LINC00271P0C7V0 271 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 KCNA5P22460 613 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 ACTR2P61160 394 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 TMEM62Q0P6H9 643 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 GPM6BQ13491 265 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 PLCB4Q15147 1175 aa13.29□□□□□ -0.28
USP3-220ENST00000561381 CEP55Q53EZ4 464 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms