RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 ID4P47928 161 aa6.63□□□□□ -1.35
VPS13C-210ENST00000561258 GJA9P57773 515 aa6.63□□□□□ -1.35
VPS13C-210ENST00000561258 ADAM17P78536 824 aa6.63□□□□□ -1.35
VPS13C-210ENST00000561258 TMPRSS15P98073 1019 aa6.63□□□□□ -1.35
VPS13C-210ENST00000561258 POU4F1Q01851 419 aa6.63□□□□□ -1.35
VPS13C-210ENST00000561258 RSPO2Q6UXX9 243 aaPredicted RBP6.63□□□□□ -1.35
VPS13C-210ENST00000561258 WDR75Q8IWA0 830 aaKnown RBP6.63□□□□□ -1.35
VPS13C-210ENST00000561258 PPIL6Q8IXY8 311 aa6.63□□□□□ -1.35
VPS13C-210ENST00000561258 SMARCC2Q8TAQ2 1214 aa6.63□□□□□ -1.35
VPS13C-210ENST00000561258 COG1Q8WTW3 980 aa6.63□□□□□ -1.35
VPS13C-210ENST00000561258 FRS2Q8WU20 508 aa6.63□□□□□ -1.35
VPS13C-210ENST00000561258 SMAD5Q99717 465 aaKnown RBP6.63□□□□□ -1.35
VPS13C-210ENST00000561258 ZFYVE21Q9BQ24 234 aa6.63□□□□□ -1.35
VPS13C-210ENST00000561258 CCDC8Q9H0W5 538 aaPredicted RBP6.63□□□□□ -1.35
VPS13C-210ENST00000561258 SAMD15Q9P1V8 674 aa6.63□□□□□ -1.35
VPS13C-210ENST00000561258 RWDD3Q9Y3V2 267 aa6.63□□□□□ -1.35
VPS13C-210ENST00000561258 NPFFR2Q9Y5X5 522 aa6.63□□□□□ -1.35
VPS13C-210ENST00000561258 STXBP3O00186 592 aa6.62□□□□□ -1.35
VPS13C-210ENST00000561258 ARVCFO00192 962 aa6.62□□□□□ -1.35
VPS13C-210ENST00000561258 CBX4O00257 560 aa6.62□□□□□ -1.35
VPS13C-210ENST00000561258 KIF3BO15066 747 aa6.62□□□□□ -1.35
VPS13C-210ENST00000561258 TPD52L2O43399 206 aaKnown RBP6.62□□□□□ -1.35
VPS13C-210ENST00000561258 PPP1R11O60927 126 aaPredicted RBP6.62□□□□□ -1.35
VPS13C-210ENST00000561258 PEX14O75381 377 aa6.62□□□□□ -1.35
VPS13C-210ENST00000561258 GLRX3O76003 335 aaKnown RBP6.62□□□□□ -1.35
VPS13C-210ENST00000561258 NAT1P18440 290 aa6.62□□□□□ -1.35
VPS13C-210ENST00000561258 SARSP49591 514 aaKnown RBP6.62□□□□□ -1.35
VPS13C-210ENST00000561258 GPR85P60893 370 aa6.62□□□□□ -1.35
VPS13C-210ENST00000561258 GUCY1A3Q02108 690 aa6.62□□□□□ -1.35
VPS13C-210ENST00000561258 DDX53Q86TM3 631 aaKnown RBP6.62□□□□□ -1.35
VPS13C-210ENST00000561258 CCAR1Q8IX12 1150 aaKnown RBP6.62□□□□□ -1.35
VPS13C-210ENST00000561258 CNTD1Q8N815 330 aa6.62□□□□□ -1.35
VPS13C-210ENST00000561258 TSPAN17Q96FV3 270 aa6.62□□□□□ -1.35
VPS13C-210ENST00000561258 WNK4Q96J92 1243 aa6.62□□□□□ -1.35
VPS13C-210ENST00000561258 RBM15Q96T37 977 aaKnown RBP eCLIP6.62□□□□□ -1.35
VPS13C-210ENST00000561258 PHF20Q9BVI0 1012 aa6.62□□□□□ -1.35
VPS13C-210ENST00000561258 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.62□□□□□ -1.35
VPS13C-210ENST00000561258 SMPD4Q9NXE4 827 aa6.62□□□□□ -1.35
VPS13C-210ENST00000561258 ZIM2Q9NZV7 527 aa6.62□□□□□ -1.35
VPS13C-210ENST00000561258 TRHDEQ9UKU6 1024 aa6.62□□□□□ -1.35
VPS13C-210ENST00000561258 PCDHA8Q9Y5H6 950 aa6.62□□□□□ -1.35
VPS13C-210ENST00000561258 SCRIBQ14160 1630 aa6.61□□□□□ -1.35
VPS13C-210ENST00000561258 ZNF891A8MT65 544 aaPredicted RBP6.61□□□□□ -1.35
VPS13C-210ENST00000561258 ARNTLO00327 626 aa6.61□□□□□ -1.35
VPS13C-210ENST00000561258 GABRDO14764 452 aa6.61□□□□□ -1.35
VPS13C-210ENST00000561258 AURKAO14965 403 aa6.61□□□□□ -1.35
VPS13C-210ENST00000561258 GNALP38405 381 aa6.61□□□□□ -1.35
VPS13C-210ENST00000561258 SCNN1BP51168 640 aa6.61□□□□□ -1.35
VPS13C-210ENST00000561258 DSG1Q02413 1049 aa6.61□□□□□ -1.35
VPS13C-210ENST00000561258 PIN1Q13526 163 aaPredicted RBP6.61□□□□□ -1.35
VPS13C-210ENST00000561258 SYDE2Q5VT97 1194 aa6.61□□□□□ -1.35
VPS13C-210ENST00000561258 CCSAPQ6IQ19 270 aaPredicted RBP6.61□□□□□ -1.35
VPS13C-210ENST00000561258 MTDHQ86UE4 582 aaKnown RBP6.61□□□□□ -1.35
VPS13C-210ENST00000561258 ZNF761Q86XN6 746 aaPredicted RBP6.61□□□□□ -1.35
VPS13C-210ENST00000561258 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.61□□□□□ -1.35
VPS13C-210ENST00000561258 CHMP4CQ96CF2 233 aa6.61□□□□□ -1.35
VPS13C-210ENST00000561258 YIPF4Q9BSR8 244 aa6.61□□□□□ -1.35
VPS13C-210ENST00000561258 CDH19Q9H159 772 aa6.61□□□□□ -1.35
VPS13C-210ENST00000561258 GPR27Q9NS67 375 aa6.61□□□□□ -1.35
VPS13C-210ENST00000561258 BACE2Q9Y5Z0 518 aa6.61□□□□□ -1.35
VPS13C-210ENST00000561258 E2F8A0AVK6 867 aa6.6□□□□□ -1.35
VPS13C-210ENST00000561258 M0R2C6 588 aa6.6□□□□□ -1.35
VPS13C-210ENST00000561258 AKAP8O43823 692 aaKnown RBP6.6□□□□□ -1.35
VPS13C-210ENST00000561258 F2P00734 622 aa6.6□□□□□ -1.35
VPS13C-210ENST00000561258 TNFRSF1AP19438 455 aa6.6□□□□□ -1.35
VPS13C-210ENST00000561258 ADCYAP1R1P41586 468 aa6.6□□□□□ -1.35
VPS13C-210ENST00000561258 CABP7Q86V35 215 aa6.6□□□□□ -1.35
VPS13C-210ENST00000561258 CCDC103Q8IW40 242 aa6.6□□□□□ -1.35
VPS13C-210ENST00000561258 IFNL3Q8IZI9 196 aa6.6□□□□□ -1.35
VPS13C-210ENST00000561258 LZTR1Q8N653 840 aa6.6□□□□□ -1.35
VPS13C-210ENST00000561258 SMC1BQ8NDV3 1235 aa6.6□□□□□ -1.35
VPS13C-210ENST00000561258 ZBTB8AQ96BR9 441 aa6.6□□□□□ -1.35
VPS13C-210ENST00000561258 HOOK2Q96ED9 719 aa6.6□□□□□ -1.35
VPS13C-210ENST00000561258 DDX11Q96FC9 970 aa6.6□□□□□ -1.35
VPS13C-210ENST00000561258 PSMD1Q99460 953 aa6.6□□□□□ -1.35
VPS13C-210ENST00000561258 RTFDC1Q9BY42 306 aaPredicted RBP6.6□□□□□ -1.35
VPS13C-210ENST00000561258 PCGF6Q9BYE7 350 aa6.6□□□□□ -1.35
VPS13C-210ENST00000561258 GPRC5CQ9NQ84 441 aa6.6□□□□□ -1.35
VPS13C-210ENST00000561258 NTMQ9P121 344 aa6.6□□□□□ -1.35
VPS13C-210ENST00000561258 TMEFF2Q9UIK5 374 aaPredicted RBP6.6□□□□□ -1.35
VPS13C-210ENST00000561258 LOC102724159A0A0B4J2E5 919 aa6.59□□□□□ -1.35
VPS13C-210ENST00000561258 C2orf71A6NGG8 1288 aa6.59□□□□□ -1.35
VPS13C-210ENST00000561258 MATN3O15232 486 aa6.59□□□□□ -1.35
VPS13C-210ENST00000561258 MEFVO15553 781 aaPredicted RBP6.59□□□□□ -1.35
VPS13C-210ENST00000561258 APPP05067 770 aa6.59□□□□□ -1.35
VPS13C-210ENST00000561258 CKMP06732 381 aa6.59□□□□□ -1.35
VPS13C-210ENST00000561258 LTBRP36941 435 aa6.59□□□□□ -1.35
VPS13C-210ENST00000561258 ZXDAP98168 799 aa6.59□□□□□ -1.35
VPS13C-210ENST00000561258 CACNB2Q08289 660 aaPredicted RBP6.59□□□□□ -1.35
VPS13C-210ENST00000561258 SMAD4Q13485 552 aaKnown RBP6.59□□□□□ -1.35
VPS13C-210ENST00000561258 PWP2Q15269 919 aaKnown RBP6.59□□□□□ -1.35
VPS13C-210ENST00000561258 E4F1Q66K89 784 aaPredicted RBP6.59□□□□□ -1.35
VPS13C-210ENST00000561258 RCSD1Q6JBY9 416 aa6.59□□□□□ -1.35
VPS13C-210ENST00000561258 ZBTB46Q86UZ6 589 aa6.59□□□□□ -1.35
VPS13C-210ENST00000561258 CPNE8Q86YQ8 564 aa6.59□□□□□ -1.35
VPS13C-210ENST00000561258 CHPFQ8IZ52 775 aa6.59□□□□□ -1.35
VPS13C-210ENST00000561258 NXPE1Q8N323 547 aa6.59□□□□□ -1.35
VPS13C-210ENST00000561258 IGSF22Q8N9C0 903 aa6.59□□□□□ -1.35
VPS13C-210ENST00000561258 CPA5Q8WXQ8 436 aa6.59□□□□□ -1.35
VPS13C-210ENST00000561258 CAMKK2Q96RR4 588 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms