RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ATP9AO75110 1047 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 TFRCP02786 760 aaKnown RBP6.01□□□□□ -1.45
VPS13C-209ENST00000560637 RSPH10BP0C881 870 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 EPB41P11171 864 aaKnown RBP6.01□□□□□ -1.45
VPS13C-209ENST00000560637 ATP1A3P13637 1013 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 CD19P15391 556 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 RCAN1P53805 252 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 PSMC6P62333 389 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 ATP2C1P98194 919 aaPredicted RBP6.01□□□□□ -1.45
VPS13C-209ENST00000560637 TFAMQ00059 246 aaKnown RBP6.01□□□□□ -1.45
VPS13C-209ENST00000560637 SP3Q02447 781 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 ADAM9Q13443 819 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 C17orf53Q8N3J3 647 aaPredicted RBP6.01□□□□□ -1.45
VPS13C-209ENST00000560637 CHST13Q8NET6 341 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 SAAL1Q96ER3 474 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 PXMP2Q9NR77 195 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 SAMSN1Q9NSI8 373 aaKnown RBP6.01□□□□□ -1.45
VPS13C-209ENST00000560637 FBXO2Q9UK22 296 aaPredicted RBP6.01□□□□□ -1.45
VPS13C-209ENST00000560637 AFG3L2Q9Y4W6 797 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.01□□□□□ -1.45
VPS13C-209ENST00000560637 RARBP10826 455 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 NR2F2P24468 414 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 NOP2P46087 812 aaKnown RBP6.01□□□□□ -1.45
VPS13C-209ENST00000560637 GCLCP48506 637 aaPredicted RBP6.01□□□□□ -1.45
VPS13C-209ENST00000560637 ACTR2P61160 394 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 PRKCEQ02156 737 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 SPAG1Q07617 926 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 TRPC3Q13507 836 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 SLC9C1Q4G0N8 1177 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 ZC2HC1CQ53FD0 456 aaPredicted RBP6.01□□□□□ -1.45
VPS13C-209ENST00000560637 CXCL17Q6UXB2 119 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 MMS19Q96T76 1030 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 ALDH8A1Q9H2A2 487 aaPredicted RBP6.01□□□□□ -1.45
VPS13C-209ENST00000560637 UNC45AQ9H3U1 944 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 TBC1D22BQ9NU19 505 aa6.01□□□□□ -1.45
VPS13C-209ENST00000560637 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.01□□□□□ -1.45
VPS13C-209ENST00000560637 MEIS2O14770 477 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 TBC1D12O60347 775 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 P4HBP07237 508 aaKnown RBP6□□□□□ -1.45
VPS13C-209ENST00000560637 FDX1P10109 184 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 FGFR4P22455 802 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 YWHABP31946 246 aaKnown RBP6□□□□□ -1.45
VPS13C-209ENST00000560637 USP11P51784 963 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 NLRP12P59046 1061 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 SETQ01105 290 aaPredicted RBP6□□□□□ -1.45
VPS13C-209ENST00000560637 KRT76Q01546 638 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 PGM5Q15124 567 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 SLC35G1Q2M3R5 365 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 ARHGAP29Q52LW3 1261 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 TWF2Q6IBS0 349 aaKnown RBP6□□□□□ -1.45
VPS13C-209ENST00000560637 GPR142Q7Z601 462 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 MTMR14Q8NCE2 650 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 ZNF397Q8NF99 534 aaPredicted RBP6□□□□□ -1.45
VPS13C-209ENST00000560637 SH3TC2Q8TF17 1288 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 SEPT1Q8WYJ6 367 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 MKL1Q969V6 931 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 FAM20AQ96MK3 541 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 TMEM106CQ9BVX2 250 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 BCAS3Q9H6U6 928 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 SYNCQ9H7C4 482 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 PARVGQ9HBI0 331 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 PRM3Q9NNZ6 103 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 CYP39A1Q9NYL5 469 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 PRKAG2Q9UGJ0 569 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 MAN1B1Q9UKM7 699 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 BICDL2A1A5D9 508 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 DENND3A2RUS2 1198 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 PHF20L1A8MW92 1017 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 MED24O75448 989 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 EIF3JO75822 258 aaKnown RBP6□□□□□ -1.45
VPS13C-209ENST00000560637 RPL13P26373 211 aaKnown RBP6□□□□□ -1.45
VPS13C-209ENST00000560637 RGS2P41220 211 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 ARPP19P56211 112 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 FANCCQ00597 558 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 PPFIA1Q13136 1202 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 CCL14Q16627 93 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 ZNF394Q53GI3 561 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 MCTP2Q6DN12 878 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 CATSPER3Q86XQ3 398 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 RETREG2Q8NC44 543 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 CAGE1Q8TC20 777 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 C16orf45Q96MC5 204 aaPredicted RBP6□□□□□ -1.45
VPS13C-209ENST00000560637 WDR18Q9BV38 432 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 PPP1R12CQ9BZL4 782 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 COL20A1Q9P218 1284 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 NXF1Q9UBU9 619 aaKnown RBP6□□□□□ -1.45
VPS13C-209ENST00000560637 A0A1W2PQ27 194 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 A0A1W2PQ64 194 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 A0A1W2PQD8 194 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 TMEM110-MUSTN1A8MSY1 372 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 EML1O00423 815 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 PQBP1O60828 265 aaKnown RBP6□□□□□ -1.45
VPS13C-209ENST00000560637 HIP1RO75146 1068 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 VTNP04004 478 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 ALDH5A1P51649 535 aaPredicted RBP6□□□□□ -1.45
VPS13C-209ENST00000560637 KIZQ2M2Z5 673 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 CCDC181Q5TID7 509 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 SCARA5Q6ZMJ2 495 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 FAM114A1Q8IWE2 563 aa6□□□□□ -1.45
VPS13C-209ENST00000560637 ELMO3Q96BJ8 720 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms