RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 HAS1Q92839 578 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 KIAA1024Q9UPX6 916 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 LEMD3Q9Y2U8 911 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 RTCBQ9Y3I0 505 aaKnown RBP12.42□□□□□ -0.42
CUX1-218ENST00000560541 GRIN2DO15399 1336 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 CNTNAP4Q9C0A0 1308 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 RHBDL3P58872 404 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 GRIK3Q13003 919 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 KLHL7Q8IXQ5 586 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 FAM210AQ96ND0 272 aa12.42□□□□□ -0.42
CUX1-218ENST00000560541 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.42□□□□□ -0.42
CUX1-218ENST00000560541 COL5A3P25940 1745 aaPredicted RBP12.42□□□□□ -0.42
CUX1-218ENST00000560541 DDX60LQ5H9U9 1706 aaKnown RBP12.42□□□□□ -0.42
CUX1-218ENST00000560541 GPR75-ASB3A0A0A6YYF3 556 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 POTEB3A0JP26 581 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 POTECB2RU33 542 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 GOLGA8KD6RF30 607 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 EBAG9O00559 213 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 EIF3HO15372 352 aaKnown RBP eCLIP12.41□□□□□ -0.421e-7■■■□□ 16.5
CUX1-218ENST00000560541 OPA1O60313 960 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 ACTN1P12814 892 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 EPS15P42566 896 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 ITIH3Q06033 890 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 TMEM119Q4V9L6 283 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 HERC4Q5GLZ8 1057 aaPredicted RBP12.41□□□□□ -0.42
CUX1-218ENST00000560541 POTEBQ6S5H4 581 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 KCTD1Q719H9 257 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 SH3GL2Q99962 352 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 CEP72Q9P209 647 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 PCDHA12Q9UN75 941 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 SSU72P8A0A1W2PR75 194 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 ESYT2A0FGR8 921 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 SERPING1P05155 500 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 STAT3P40763 770 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 E2F5Q15329 346 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 ZCWPW2Q504Y3 356 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 ADGRF4Q8IZF3 695 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 RIC8AQ9NPQ8 531 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 MTMR4Q9NYA4 1195 aa12.41□□□□□ -0.42
CUX1-218ENST00000560541 PPP1R12BO60237 982 aaPredicted RBP12.4□□□□□ -0.42
CUX1-218ENST00000560541 RWDD2BP57060 319 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 KLHL30Q0D2K2 578 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 NNTQ13423 1086 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 PDIA5Q14554 519 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 IFT20Q8IY31 132 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 JMJD4Q9H9V9 463 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 CCNL1Q9UK58 526 aaPredicted RBP12.4□□□□□ -0.42
CUX1-218ENST00000560541 ATP6V0A2Q9Y487 856 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 USP17L15C9J2P7 530 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 USP17L13C9JLJ4 530 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 USP17L11C9JVI0 530 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 USP17L18D6R9N7 530 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 USP17L22D6RA61 530 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 USP17L17D6RBQ6 530 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 USP17L19D6RCP7 530 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 USP17L20D6RJB6 530 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 KRT18P05783 430 aaKnown RBP12.4□□□□□ -0.42
CUX1-218ENST00000560541 USP17L24Q0WX57 530 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 RBBP5Q15291 538 aaKnown RBP12.4□□□□□ -0.42
CUX1-218ENST00000560541 CFAP58Q5T655 872 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 USP17L6PQ6QN14 398 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 GPBP1Q86WP2 473 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 CNBD1Q8NA66 436 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 TNRC6CQ9HCJ0 1690 aaKnown RBP12.4□□□□□ -0.42
CUX1-218ENST00000560541 SHTN1A0MZ66 631 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 ZNF233A6NK53 670 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 USP17L10C9JJH3 530 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 RFC4P35249 363 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 RPS6KA3P51812 740 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 USP4Q13107 963 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 CASKIN2Q8WXE0 1202 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 FAM107BQ9H098 131 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 BMP2KQ9NSY1 1161 aaPredicted RBP12.4□□□□□ -0.42
CUX1-218ENST00000560541 ABCB11O95342 1321 aa12.4□□□□□ -0.42
CUX1-218ENST00000560541 EP400Q96L91 3159 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 CHUKO15111 745 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 GUCY1A3Q02108 690 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 ADAM9Q13443 819 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 CRYMQ14894 314 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 NAB2Q15742 525 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 SLC18A3Q16572 532 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 RNF10Q8N5U6 811 aaKnown RBP12.39□□□□□ -0.43
CUX1-218ENST00000560541 SCFD1Q8WVM8 642 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 CAVIN3Q969G5 261 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 A0A1B0GUA9 196 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 GRID2IPA4D2P6 1211 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 NDUFAB1O14561 156 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 KCNK3O14649 394 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 RAD51CO43502 376 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 PLA2G4BP0C869 781 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 CASP5P51878 434 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 ALS2CLQ60I27 953 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 PROM2Q8N271 834 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 KLHL23Q8NBE8 558 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 SPDYE1Q8NFV5 336 aaPredicted RBP12.39□□□□□ -0.43
CUX1-218ENST00000560541 RPGRQ92834 1020 aaKnown RBP12.39□□□□□ -0.43
CUX1-218ENST00000560541 SPDL1Q96EA4 605 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 TMEM165Q9HC07 324 aa12.39□□□□□ -0.43
CUX1-218ENST00000560541 POTEFA5A3E0 1075 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 MEIS1O00470 390 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms