RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CCDC66A2RUB6 948 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 C7orf72A4D263 438 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 ALG1L2C9J202 215 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 TRAF5O00463 557 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 PPP1R11O60927 126 aaPredicted RBP2.25□□□□□ -2.05
USP3-209ENST00000558925 ALDH1L1O75891 902 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 KRT37O76014 449 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 SOD2P04179 222 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 BPIP17213 487 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 PAMP19021 973 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 NOP2P46087 812 aaKnown RBP2.25□□□□□ -2.05
USP3-209ENST00000558925 MAPKAPK2P49137 400 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 PCBP3P57721 371 aaKnown RBP2.25□□□□□ -2.05
USP3-209ENST00000558925 CYP4F8P98187 520 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 EXOSC10Q01780 885 aaKnown RBP2.25□□□□□ -2.05
USP3-209ENST00000558925 DSG1Q02413 1049 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 ITKQ08881 620 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 KCNAB2Q13303 367 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 ICAM4Q14773 271 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 TTF1Q15361 905 aaPredicted RBP2.25□□□□□ -2.05
USP3-209ENST00000558925 TESK1Q15569 626 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 TMEM177Q53S58 311 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 EEF1DP3Q658K8 133 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 E4F1Q66K89 784 aaPredicted RBP2.25□□□□□ -2.05
USP3-209ENST00000558925 CREB3L3Q68CJ9 461 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 IGFL4Q6B9Z1 124 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 ZC3H14Q6PJT7 736 aaKnown RBP2.25□□□□□ -2.05
USP3-209ENST00000558925 RSPO2Q6UXX9 243 aaPredicted RBP2.25□□□□□ -2.05
USP3-209ENST00000558925 TEX2Q8IWB9 1127 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 AHI1Q8N157 1196 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 NUP43Q8NFH3 380 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 PUM2Q8TB72 1066 aaKnown RBP eCLIP2.25□□□□□ -2.05
USP3-209ENST00000558925 WDR66Q8TBY9 1149 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 ENOX1Q8TC92 643 aaKnown RBP2.25□□□□□ -2.05
USP3-209ENST00000558925 CHTF18Q8WVB6 975 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 DPF3Q92784 378 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 USP7Q93009 1102 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 WNK4Q96J92 1243 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 CCDC140Q96MF4 163 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 PTCHD1Q96NR3 888 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 GPR101Q96P66 508 aaPredicted RBP2.25□□□□□ -2.05
USP3-209ENST00000558925 NOX5Q96PH1 765 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 KCNJ15Q99712 375 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 JAM3Q9BX67 310 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 CDIP1Q9H305 208 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 MS4A5Q9H3V2 200 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 XPO5Q9HAV4 1204 aaKnown RBP eCLIP2.25□□□□□ -2.05
USP3-209ENST00000558925 CD248Q9HCU0 757 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 GPR27Q9NS67 375 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 SPTLC3Q9NUV7 552 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 ERVK13-1Q9NX77 482 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 BTG4Q9NY30 223 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 SLC5A4Q9NY91 659 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 C11orf21Q9P2W6 132 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 IMPACTQ9P2X3 320 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 GULP1Q9UBP9 304 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 ACSL6Q9UKU0 697 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 TRHDEQ9UKU6 1024 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 CBLCQ9ULV8 474 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 SSU72P8A0A1W2PR75 194 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 TCRBV5S4A2TA0A5A2 114 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 SHTN1A0MZ66 631 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 PTPDC1A2A3K4 754 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 LCHNA4D1U4 455 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 GABRDO14764 452 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 PRKD3O94806 890 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 FKBP9O95302 570 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 SCGB1D2O95969 90 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 F2P00734 622 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 AMY2AP04746 511 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 COL6A2P12110 1019 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 ATP2A2P16615 1042 aaKnown RBP2.24□□□□□ -2.05
USP3-209ENST00000558925 PFKLP17858 780 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 KRT15P19012 456 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 AMY2BP19961 511 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 GRK2P25098 689 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 PMLP29590 882 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 GRK3P35626 688 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 FLT3P36888 993 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 ARL4AP40617 200 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 IARSP41252 1262 aaKnown RBP2.24□□□□□ -2.05
USP3-209ENST00000558925 SCNN1BP51168 640 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 MECP2P51608 486 aaKnown RBP2.24□□□□□ -2.05
USP3-209ENST00000558925 KRTAP10-9P60411 292 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 IL2P60568 153 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 MVKQ03426 396 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 MCL1Q07820 350 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 PAK1Q13153 545 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 DHCR24Q15392 516 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 ABCB5Q2M3G0 1257 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 GALNT18Q6P9A2 607 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 UBE2R2Q712K3 238 aaPredicted RBP2.24□□□□□ -2.05
USP3-209ENST00000558925 FKBP9P1Q75LS8 142 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 OVCH1Q7RTY7 1134 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 DDX53Q86TM3 631 aaKnown RBP2.24□□□□□ -2.05
USP3-209ENST00000558925 SPATS2Q86XZ4 545 aaKnown RBP2.24□□□□□ -2.05
USP3-209ENST00000558925 WDR75Q8IWA0 830 aaKnown RBP2.24□□□□□ -2.05
USP3-209ENST00000558925 CMIPQ8IY22 773 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 CNTD1Q8N815 330 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 NAT16Q8N8M0 369 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms