RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 NKD2Q969F2 451 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-230ENST00000557427 ZNF689Q96CS4 500 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-230ENST00000557427 RMDN1Q96DB5 314 aa14.38□□□□□ -0.11
SHMT2-230ENST00000557427 INTS4Q96HW7 963 aaKnown RBP14.38□□□□□ -0.11
SHMT2-230ENST00000557427 TMX3Q96JJ7 454 aa14.38□□□□□ -0.11
SHMT2-230ENST00000557427 TAAR1Q96RJ0 339 aa14.38□□□□□ -0.11
SHMT2-230ENST00000557427 PCDHGC5Q9Y5F6 944 aa14.38□□□□□ -0.11
SHMT2-230ENST00000557427 KIAA1217Q5T5P2 1943 aa14.38□□□□□ -0.11
SHMT2-230ENST00000557427 LAMA4Q16363 1823 aa14.38□□□□□ -0.11
SHMT2-230ENST00000557427 ADGRA3Q8IWK6 1321 aa14.38□□□□□ -0.11
SHMT2-230ENST00000557427 DDX11L8A8MPP1 907 aa14.37□□□□□ -0.11
SHMT2-230ENST00000557427 TREHO43280 583 aa14.37□□□□□ -0.11
SHMT2-230ENST00000557427 ITGB1P05556 798 aa14.37□□□□□ -0.11
SHMT2-230ENST00000557427 PTMSP20962 102 aa14.37□□□□□ -0.11
SHMT2-230ENST00000557427 SEC23AQ15436 765 aa14.37□□□□□ -0.11
SHMT2-230ENST00000557427 USH1GQ495M9 461 aa14.37□□□□□ -0.11
SHMT2-230ENST00000557427 STOX1Q6ZVD7 989 aa14.37□□□□□ -0.11
SHMT2-230ENST00000557427 RBM23Q86U06 439 aaKnown RBP14.37□□□□□ -0.11
SHMT2-230ENST00000557427 RASEFQ8IZ41 740 aa14.37□□□□□ -0.11
SHMT2-230ENST00000557427 ADGRF4Q8IZF3 695 aa14.37□□□□□ -0.11
SHMT2-230ENST00000557427 SPPL3Q8TCT6 385 aa14.37□□□□□ -0.11
SHMT2-230ENST00000557427 TNPO1Q92973 898 aaKnown RBP14.37□□□□□ -0.11
SHMT2-230ENST00000557427 GBP4Q96PP9 640 aa14.37□□□□□ -0.11
SHMT2-230ENST00000557427 C16orf70Q9BSU1 422 aa14.37□□□□□ -0.11
SHMT2-230ENST00000557427 SENP2Q9HC62 589 aa14.37□□□□□ -0.11
SHMT2-230ENST00000557427 FOXD4L1Q9NU39 408 aa14.37□□□□□ -0.11
SHMT2-230ENST00000557427 RWDD3Q9Y3V2 267 aa14.37□□□□□ -0.11
SHMT2-230ENST00000557427 ERICH2A1L162 156 aa14.36□□□□□ -0.11
SHMT2-230ENST00000557427 B4DLN1 442 aa14.36□□□□□ -0.11
SHMT2-230ENST00000557427 ARP10275 920 aa14.36□□□□□ -0.11
SHMT2-230ENST00000557427 ATF7P17544 494 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-230ENST00000557427 DEKP35659 375 aaKnown RBP14.36□□□□□ -0.11
SHMT2-230ENST00000557427 MRPL12P52815 198 aaKnown RBP14.36□□□□□ -0.11
SHMT2-230ENST00000557427 LAMC2Q13753 1193 aa14.36□□□□□ -0.11
SHMT2-230ENST00000557427 HSDL1Q3SXM5 330 aa14.36□□□□□ -0.11
SHMT2-230ENST00000557427 RNF20Q5VTR2 975 aa14.36□□□□□ -0.11
SHMT2-230ENST00000557427 STAG2Q8N3U4 1231 aa14.36□□□□□ -0.11
SHMT2-230ENST00000557427 VN1R2Q8NFZ6 395 aa14.36□□□□□ -0.11
SHMT2-230ENST00000557427 ATP6V0A1Q93050 837 aa14.36□□□□□ -0.11
SHMT2-230ENST00000557427 PLVAPQ9BX97 442 aa14.36□□□□□ -0.11
SHMT2-230ENST00000557427 MYH7BA7E2Y1 1941 aa14.36□□□□□ -0.11
SHMT2-230ENST00000557427 C17orf102A2RUQ5 167 aa14.35□□□□□ -0.11
SHMT2-230ENST00000557427 SORBS3O60504 671 aa14.35□□□□□ -0.11
SHMT2-230ENST00000557427 TSGA10IPQ3SY00 556 aa14.35□□□□□ -0.11
SHMT2-230ENST00000557427 ASPRV1Q53RT3 343 aa14.35□□□□□ -0.11
SHMT2-230ENST00000557427 CREB3L3Q68CJ9 461 aa14.35□□□□□ -0.11
SHMT2-230ENST00000557427 RGS22Q8NE09 1264 aa14.35□□□□□ -0.11
SHMT2-230ENST00000557427 SYTL5Q8TDW5 730 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-230ENST00000557427 P2RX5Q93086 422 aa14.35□□□□□ -0.11
SHMT2-230ENST00000557427 CNTNAP3BQ96NU0 1288 aa14.35□□□□□ -0.11
SHMT2-230ENST00000557427 CNTNAP3Q9BZ76 1288 aa14.35□□□□□ -0.11
SHMT2-230ENST00000557427 SMOC2Q9H3U7 446 aa14.35□□□□□ -0.11
SHMT2-230ENST00000557427 RNPEPQ9H4A4 650 aa14.35□□□□□ -0.11
SHMT2-230ENST00000557427 JMJD4Q9H9V9 463 aa14.35□□□□□ -0.11
SHMT2-230ENST00000557427 ZSWIM6Q9HCJ5 1215 aa14.35□□□□□ -0.11
SHMT2-230ENST00000557427 MRPL42Q9Y6G3 142 aaKnown RBP14.35□□□□□ -0.11
SHMT2-230ENST00000557427 EP300Q09472 2414 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-230ENST00000557427 WDR19Q8NEZ3 1342 aa14.35□□□□□ -0.11
SHMT2-230ENST00000557427 KLRF2D3W0D1 207 aa14.34□□□□□ -0.11
SHMT2-230ENST00000557427 SLC27A2O14975 620 aa14.34□□□□□ -0.11
SHMT2-230ENST00000557427 PPFIA4O75335 1185 aa14.34□□□□□ -0.11
SHMT2-230ENST00000557427 DGKIO75912 1065 aa14.34□□□□□ -0.11
SHMT2-230ENST00000557427 BTG3Q14201 252 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-230ENST00000557427 GSE1Q14687 1217 aa14.34□□□□□ -0.11
SHMT2-230ENST00000557427 WTAPQ15007 396 aa14.34□□□□□ -0.11
SHMT2-230ENST00000557427 SART3Q15020 963 aaKnown RBP14.34□□□□□ -0.11
SHMT2-230ENST00000557427 STXBP2Q15833 593 aa14.34□□□□□ -0.11
SHMT2-230ENST00000557427 CDC37Q16543 378 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-230ENST00000557427 MYSM1Q5VVJ2 828 aa14.34□□□□□ -0.11
SHMT2-230ENST00000557427 KLHL23Q8NBE8 558 aa14.34□□□□□ -0.11
SHMT2-230ENST00000557427 ATP8B4Q8TF62 1192 aa14.34□□□□□ -0.11
SHMT2-230ENST00000557427 POF1BQ8WVV4 589 aa14.34□□□□□ -0.11
SHMT2-230ENST00000557427 APBB2Q92870 758 aa14.34□□□□□ -0.11
SHMT2-230ENST00000557427 PNMA2Q9UL42 364 aa14.34□□□□□ -0.11
SHMT2-230ENST00000557427 ENPP3O14638 875 aa14.33□□□□□ -0.12
SHMT2-230ENST00000557427 PER2O15055 1255 aa14.33□□□□□ -0.12
SHMT2-230ENST00000557427 BRD1O95696 1058 aa14.33□□□□□ -0.12
SHMT2-230ENST00000557427 SMIM10L2AP0DMW4 78 aa14.33□□□□□ -0.12
SHMT2-230ENST00000557427 SMIM10L2BP0DMW5 78 aa14.33□□□□□ -0.12
SHMT2-230ENST00000557427 SP100P23497 879 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-230ENST00000557427 PSMA5P28066 241 aa14.33□□□□□ -0.12
SHMT2-230ENST00000557427 ANTXR2P58335 489 aa14.33□□□□□ -0.12
SHMT2-230ENST00000557427 QRICH1Q2TAL8 776 aa14.33□□□□□ -0.12
SHMT2-230ENST00000557427 FAM26DQ5JW98 314 aa14.33□□□□□ -0.12
SHMT2-230ENST00000557427 DGLUCYQ7Z3D6 616 aa14.33□□□□□ -0.12
SHMT2-230ENST00000557427 KREMEN2Q8NCW0 462 aa14.33□□□□□ -0.12
SHMT2-230ENST00000557427 IGDCC4Q8TDY8 1250 aa14.33□□□□□ -0.12
SHMT2-230ENST00000557427 NSUN6Q8TEA1 469 aaKnown RBP14.33□□□□□ -0.12
SHMT2-230ENST00000557427 S1PR5Q9H228 398 aa14.33□□□□□ -0.12
SHMT2-230ENST00000557427 MAD2L2Q9UI95 211 aa14.33□□□□□ -0.12
SHMT2-230ENST00000557427 KIAA1671Q9BY89 1806 aa14.33□□□□□ -0.12
SHMT2-230ENST00000557427 CACNA1GO43497 2377 aa14.33□□□□□ -0.12
SHMT2-230ENST00000557427 TTC3P53804 2025 aa14.32□□□□□ -0.12
SHMT2-230ENST00000557427 TPRP12270 2363 aaKnown RBP14.32□□□□□ -0.12
SHMT2-230ENST00000557427 PALM3A6NDB9 673 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-230ENST00000557427 PRC1O43663 620 aa14.32□□□□□ -0.12
SHMT2-230ENST00000557427 CAND2O75155 1236 aa14.32□□□□□ -0.12
SHMT2-230ENST00000557427 EIF3JO75822 258 aaKnown RBP14.32□□□□□ -0.12
SHMT2-230ENST00000557427 CHRNA1P02708 482 aa14.32□□□□□ -0.12
SHMT2-230ENST00000557427 SP2Q02086 613 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms