RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 RPGRIP1Q96KN7 1286 aa16.23■□□□□ 0.19
CUX1-215ENST00000556210 ANKZF1Q9H8Y5 726 aa16.23■□□□□ 0.19
CUX1-215ENST00000556210 L1RE1Q9UN81 338 aa16.23■□□□□ 0.19
CUX1-215ENST00000556210 USTQ9Y2C2 406 aa16.23■□□□□ 0.19
CUX1-215ENST00000556210 HSPA1LP34931 641 aa16.23■□□□□ 0.19
CUX1-215ENST00000556210 PPFIA1Q13136 1202 aa16.23■□□□□ 0.19
CUX1-215ENST00000556210 PRAMEF18Q5VWM3 479 aa16.23■□□□□ 0.19
CUX1-215ENST00000556210 TAB3Q8N5C8 712 aaPredicted RBP16.23■□□□□ 0.19
CUX1-215ENST00000556210 PAIP2Q9BPZ3 127 aaKnown RBP16.23■□□□□ 0.19
CUX1-215ENST00000556210 GOLGA6L10A0A0M3HER8 536 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 A0A1W2PQC6 194 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 MESDQ14696 234 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 ICE2Q659A1 982 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 REEP2Q9BRK0 252 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 PACSIN1Q9BY11 444 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 PTPN22Q9Y2R2 807 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 ABCB11O95342 1321 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 GOLGA6L7A0A1B0GV03 622 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 PVALEFA0A1B0GWK0 134 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 NKRFO15226 690 aaKnown RBP eCLIP16.22■□□□□ 0.192e-6■■□□□ 12.1
CUX1-215ENST00000556210 GCFC2P16383 781 aaKnown RBP16.22■□□□□ 0.19
CUX1-215ENST00000556210 TM4SF1P30408 202 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 SH2D3CQ8N5H7 860 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 SPATA4Q8NEY3 305 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 ACER1Q8TDN7 264 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 HDAC7Q8WUI4 952 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 LMBR1Q8WVP7 490 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 GLT8D2Q9H1C3 349 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 IKZF4Q9H2S9 585 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 DHX36Q9H2U1 1008 aaKnown RBP16.22■□□□□ 0.19
CUX1-215ENST00000556210 ARHGAP20Q9P2F6 1191 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 ATP6V0A2Q9Y487 856 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 C5P01031 1676 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 FANCGO15287 622 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 BUB1BO60566 1050 aaPredicted RBP16.22■□□□□ 0.19
CUX1-215ENST00000556210 MED24O75448 989 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 USP14P54578 494 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 ADCY1Q08828 1119 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 FOXR1Q6PIV2 292 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 SP8Q8IXZ3 490 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 CERS5Q8N5B7 392 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 CHURC1Q8WUH1 139 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 MASTLQ96GX5 879 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 NAP1L4Q99733 375 aaKnown RBP16.22■□□□□ 0.19
CUX1-215ENST00000556210 DDX47Q9H0S4 455 aaKnown RBP16.22■□□□□ 0.19
CUX1-215ENST00000556210 PSD3Q9NYI0 1048 aa16.22■□□□□ 0.19
CUX1-215ENST00000556210 DMGDHQ9UI17 866 aaKnown RBP16.22■□□□□ 0.19
CUX1-215ENST00000556210 PDS5AQ29RF7 1337 aaKnown RBP16.21■□□□□ 0.19
CUX1-215ENST00000556210 RHBDL3P58872 404 aa16.21■□□□□ 0.19
CUX1-215ENST00000556210 PLCB3Q01970 1234 aa16.21■□□□□ 0.19
CUX1-215ENST00000556210 SLC35G1Q2M3R5 365 aa16.21■□□□□ 0.19
CUX1-215ENST00000556210 GLYCTKQ8IVS8 523 aa16.21■□□□□ 0.19
CUX1-215ENST00000556210 PNMA5Q96PV4 448 aa16.21■□□□□ 0.19
CUX1-215ENST00000556210 CAPN7Q9Y6W3 813 aa16.21■□□□□ 0.19
CUX1-215ENST00000556210 GNA14O95837 355 aa16.21■□□□□ 0.18
CUX1-215ENST00000556210 NR3C1P04150 777 aa16.21■□□□□ 0.18
CUX1-215ENST00000556210 KLRC1P26715 233 aa16.21■□□□□ 0.18
CUX1-215ENST00000556210 SSTR3P32745 418 aaPredicted RBP16.21■□□□□ 0.18
CUX1-215ENST00000556210 GCLMP48507 274 aa16.21■□□□□ 0.18
CUX1-215ENST00000556210 CASP4P49662 377 aa16.21■□□□□ 0.18
CUX1-215ENST00000556210 KRT71Q3SY84 523 aa16.21■□□□□ 0.18
CUX1-215ENST00000556210 TMEM179Q6ZVK1 233 aa16.21■□□□□ 0.18
CUX1-215ENST00000556210 CATSPER3Q86XQ3 398 aa16.21■□□□□ 0.18
CUX1-215ENST00000556210 SCLT1Q96NL6 688 aa16.21■□□□□ 0.18
CUX1-215ENST00000556210 ZNF341Q9BYN7 854 aa16.21■□□□□ 0.18
CUX1-215ENST00000556210 BLOC1S4Q9NUP1 217 aa16.21■□□□□ 0.18
CUX1-215ENST00000556210 DNAJC17Q9NVM6 304 aaKnown RBP16.21■□□□□ 0.18
CUX1-215ENST00000556210 ZSCAN5CA6NGD5 496 aaPredicted RBP16.2■□□□□ 0.18
CUX1-215ENST00000556210 SERPING1P05155 500 aa16.2■□□□□ 0.18
CUX1-215ENST00000556210 CTNNA1P35221 906 aaKnown RBP16.2■□□□□ 0.18
CUX1-215ENST00000556210 PAK2Q13177 524 aa16.2■□□□□ 0.18
CUX1-215ENST00000556210 PRMT6Q96LA8 375 aaPredicted RBP16.2■□□□□ 0.18
CUX1-215ENST00000556210 LRRIQ3A6PVS8 624 aaPredicted RBP16.2■□□□□ 0.18
CUX1-215ENST00000556210 KLRC4O43908 158 aa16.2■□□□□ 0.18
CUX1-215ENST00000556210 EEPD1Q7L9B9 569 aa16.2■□□□□ 0.18
CUX1-215ENST00000556210 EFCAB13Q8IY85 973 aa16.2■□□□□ 0.18
CUX1-215ENST00000556210 HNRNPLLQ8WVV9 542 aaKnown RBP16.2■□□□□ 0.18
CUX1-215ENST00000556210 CCDC114Q96M63 670 aa16.2■□□□□ 0.18
CUX1-215ENST00000556210 UBE2TQ9NPD8 197 aaPredicted RBP16.2■□□□□ 0.18
CUX1-215ENST00000556210 ITIH6Q6UXX5 1313 aa16.2■□□□□ 0.18
CUX1-215ENST00000556210 CCDC172P0C7W6 258 aa16.2■□□□□ 0.18
CUX1-215ENST00000556210 PPP1R7Q15435 360 aa16.2■□□□□ 0.18
CUX1-215ENST00000556210 EIF2AK1Q9BQI3 630 aaKnown RBP16.2■□□□□ 0.18
CUX1-215ENST00000556210 A0A087WUV0 522 aaPredicted RBP16.19■□□□□ 0.18
CUX1-215ENST00000556210 A0A087X0T9 212 aa16.19■□□□□ 0.18
CUX1-215ENST00000556210 FAM228BP0C875 321 aa16.19■□□□□ 0.18
CUX1-215ENST00000556210 KCNA1Q09470 495 aa16.19■□□□□ 0.18
CUX1-215ENST00000556210 PDCLQ13371 301 aa16.19■□□□□ 0.18
CUX1-215ENST00000556210 PODNQ7Z5L7 613 aa16.19■□□□□ 0.18
CUX1-215ENST00000556210 DDX42Q86XP3 938 aaKnown RBP eCLIP16.19■□□□□ 0.18
CUX1-215ENST00000556210 CEP57Q86XR8 500 aa16.19■□□□□ 0.18
CUX1-215ENST00000556210 SPATA20Q8TB22 786 aa16.19■□□□□ 0.18
CUX1-215ENST00000556210 PARVGQ9HBI0 331 aa16.19■□□□□ 0.18
CUX1-215ENST00000556210 RBM12Q9NTZ6 932 aaKnown RBP16.19■□□□□ 0.18
CUX1-215ENST00000556210 AMFRQ9UKV5 643 aa16.19■□□□□ 0.18
CUX1-215ENST00000556210 GINS2Q9Y248 185 aa16.19■□□□□ 0.18
CUX1-215ENST00000556210 COPB2P35606 906 aa16.19■□□□□ 0.18
CUX1-215ENST00000556210 ARHGAP25P42331 645 aa16.19■□□□□ 0.18
CUX1-215ENST00000556210 WDR59Q6PJI9 974 aa16.19■□□□□ 0.18
CUX1-215ENST00000556210 C4orf32Q8N8J7 132 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms