RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 TREML2Q5T2D2 321 aa16.34■□□□□ 0.21
VPS33B-205ENST00000556096 LBX2Q6XYB7 198 aa16.34■□□□□ 0.21
VPS33B-205ENST00000556096 GADL1Q6ZQY3 521 aa16.34■□□□□ 0.21
VPS33B-205ENST00000556096 TPH2Q8IWU9 490 aa16.34■□□□□ 0.21
VPS33B-205ENST00000556096 MB21D1Q8N884 522 aa16.34■□□□□ 0.21
VPS33B-205ENST00000556096 CHST13Q8NET6 341 aa16.34■□□□□ 0.21
VPS33B-205ENST00000556096 NACC1Q96RE7 527 aa16.34■□□□□ 0.21
VPS33B-205ENST00000556096 A0A0G2JMZ2 1700 aa16.33■□□□□ 0.21
VPS33B-205ENST00000556096 NPHP3-ACAD11A0A0J9YXS1 232 aa16.33■□□□□ 0.21
VPS33B-205ENST00000556096 MAFGO15525 162 aa16.33■□□□□ 0.21
VPS33B-205ENST00000556096 CCND2P30279 289 aa16.33■□□□□ 0.21
VPS33B-205ENST00000556096 HERC4Q5GLZ8 1057 aaPredicted RBP16.33■□□□□ 0.21
VPS33B-205ENST00000556096 VSIG10LQ86VR7 867 aa16.33■□□□□ 0.21
VPS33B-205ENST00000556096 NSUN6Q8TEA1 469 aaKnown RBP16.33■□□□□ 0.21
VPS33B-205ENST00000556096 VPS16Q9H269 839 aa16.33■□□□□ 0.21
VPS33B-205ENST00000556096 BHMT2Q9H2M3 363 aa16.33■□□□□ 0.21
VPS33B-205ENST00000556096 TAB2Q9NYJ8 693 aa16.33■□□□□ 0.21
VPS33B-205ENST00000556096 CYP39A1Q9NYL5 469 aa16.33■□□□□ 0.21
VPS33B-205ENST00000556096 MYCLP12524 364 aaPredicted RBP16.33■□□□□ 0.2
VPS33B-205ENST00000556096 ITGB3BPQ13352 177 aaPredicted RBP16.33■□□□□ 0.2
VPS33B-205ENST00000556096 MIER3Q7Z3K6 550 aa16.33■□□□□ 0.2
VPS33B-205ENST00000556096 HHIPL1Q96JK4 782 aa16.33■□□□□ 0.2
VPS33B-205ENST00000556096 TSG101Q99816 390 aa16.33■□□□□ 0.2
VPS33B-205ENST00000556096 LGALS16A8MUM7 142 aa16.32■□□□□ 0.2
VPS33B-205ENST00000556096 P4HBP07237 508 aaKnown RBP16.32■□□□□ 0.2
VPS33B-205ENST00000556096 NR3C2P08235 984 aa16.32■□□□□ 0.2
VPS33B-205ENST00000556096 PTPN21Q16825 1174 aa16.32■□□□□ 0.2
VPS33B-205ENST00000556096 RINT1Q6NUQ1 792 aa16.32■□□□□ 0.2
VPS33B-205ENST00000556096 TC2NQ8N9U0 490 aa16.32■□□□□ 0.2
VPS33B-205ENST00000556096 CCDC102AQ96A19 550 aa16.32■□□□□ 0.2
VPS33B-205ENST00000556096 GPRASP2Q96D09 838 aa16.32■□□□□ 0.2
VPS33B-205ENST00000556096 REEP2Q9BRK0 252 aa16.32■□□□□ 0.2
VPS33B-205ENST00000556096 A1CFQ9NQ94 594 aaKnown RBP16.32■□□□□ 0.2
VPS33B-205ENST00000556096 KCND2Q9NZV8 630 aa16.32■□□□□ 0.2
VPS33B-205ENST00000556096 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.32■□□□□ 0.2
VPS33B-205ENST00000556096 PCNTO95613 3336 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 STAM2O75886 525 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 TPM2P07951 284 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 GAP43P17677 238 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 MOGSQ13724 837 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 LRRC41Q15345 812 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 ZCWPW2Q504Y3 356 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 C1orf186Q6ZWK4 172 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 NLRX1Q86UT6 975 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 PPFIBP1Q86W92 1011 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 ZNF507Q8TCN5 953 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 CNOT6LQ96LI5 555 aaKnown RBP16.31■□□□□ 0.2
VPS33B-205ENST00000556096 TUBGCP2Q9BSJ2 902 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 FBXO40Q9UH90 709 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 COL4A3BPQ9Y5P4 624 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 A0A1W2PQC6 194 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 AKR1B15C9JRZ8 316 aaPredicted RBP16.31■□□□□ 0.2
VPS33B-205ENST00000556096 LYPLA2O95372 231 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 DNM2P50570 870 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 CACNB1Q02641 598 aaPredicted RBP16.31■□□□□ 0.2
VPS33B-205ENST00000556096 SNAPC2Q13487 334 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 TRIM14Q14142 442 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 PLS1Q14651 629 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 RIOX2Q8IUF8 465 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 CREBRFQ8IUR6 639 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 GLIS3Q8NEA6 775 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 PIGOQ8TEQ8 1089 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 INPP4AQ96PE3 977 aaPredicted RBP16.31■□□□□ 0.2
VPS33B-205ENST00000556096 PURBQ96QR8 312 aaKnown RBP16.31■□□□□ 0.2
VPS33B-205ENST00000556096 PANX2Q96RD6 677 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 LXNQ9BS40 222 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 RUSC1Q9BVN2 902 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 ZSWIM4Q9H7M6 989 aa16.31■□□□□ 0.2
VPS33B-205ENST00000556096 ZBTB48P10074 688 aaPredicted RBP16.3■□□□□ 0.2
VPS33B-205ENST00000556096 KRT76Q01546 638 aa16.3■□□□□ 0.2
VPS33B-205ENST00000556096 UBXN1Q04323 297 aa16.3■□□□□ 0.2
VPS33B-205ENST00000556096 RAD51AP2Q09MP3 1159 aa16.3■□□□□ 0.2
VPS33B-205ENST00000556096 EPM2AIP1Q7L775 607 aaPredicted RBP16.3■□□□□ 0.2
VPS33B-205ENST00000556096 TMEM139Q8IV31 216 aa16.3■□□□□ 0.2
VPS33B-205ENST00000556096 DNAJC5GQ8N7S2 189 aa16.3■□□□□ 0.2
VPS33B-205ENST00000556096 RDM1Q8NG50 284 aa16.3■□□□□ 0.2
VPS33B-205ENST00000556096 SCFD1Q8WVM8 642 aa16.3■□□□□ 0.2
VPS33B-205ENST00000556096 IWS1Q96ST2 819 aa16.3■□□□□ 0.2
VPS33B-205ENST00000556096 WRAP73Q9P2S5 460 aaPredicted RBP16.3■□□□□ 0.2
VPS33B-205ENST00000556096 AGTPBP1Q9UPW5 1226 aa16.3■□□□□ 0.2
VPS33B-205ENST00000556096 CCL15-CCL14A0A0B4J2E2 113 aa16.29■□□□□ 0.2
VPS33B-205ENST00000556096 TESPA1A2RU30 521 aaPredicted RBP16.29■□□□□ 0.2
VPS33B-205ENST00000556096 DDX39AO00148 427 aaKnown RBP16.29■□□□□ 0.2
VPS33B-205ENST00000556096 STX10O60499 249 aa16.29■□□□□ 0.2
VPS33B-205ENST00000556096 TBCAO75347 108 aaKnown RBP16.29■□□□□ 0.2
VPS33B-205ENST00000556096 TPM1P09493 284 aa16.29■□□□□ 0.2
VPS33B-205ENST00000556096 SFNP31947 248 aa16.29■□□□□ 0.2
VPS33B-205ENST00000556096 JAK3P52333 1124 aa16.29■□□□□ 0.2
VPS33B-205ENST00000556096 FKBP3Q00688 224 aaKnown RBP16.29■□□□□ 0.2
VPS33B-205ENST00000556096 RBL2Q08999 1139 aa16.29■□□□□ 0.2
VPS33B-205ENST00000556096 CCL15Q16663 113 aa16.29■□□□□ 0.2
VPS33B-205ENST00000556096 PPP4R3CPQ6ZMV5 832 aa16.29■□□□□ 0.2
VPS33B-205ENST00000556096 LRRC55Q6ZSA7 311 aa16.29■□□□□ 0.2
VPS33B-205ENST00000556096 FASTKD5Q7L8L6 764 aaKnown RBP16.29■□□□□ 0.2
VPS33B-205ENST00000556096 SFR1Q86XK3 245 aa16.29■□□□□ 0.2
VPS33B-205ENST00000556096 DNERQ8NFT8 737 aa16.29■□□□□ 0.2
VPS33B-205ENST00000556096 CCDC51Q96ER9 411 aa16.29■□□□□ 0.2
VPS33B-205ENST00000556096 CDHR1Q96JP9 859 aa16.29■□□□□ 0.2
VPS33B-205ENST00000556096 MS4A4AQ96JQ5 239 aa16.29■□□□□ 0.2
VPS33B-205ENST00000556096 CEP63Q96MT8 703 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms