RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PLEKHG4BQ96PX9 1271 aa6.08□□□□□ -1.44
SCFD1-216ENST00000555550 DPYSL5Q9BPU6 564 aa6.08□□□□□ -1.44
SCFD1-216ENST00000555550 CARD11Q9BXL7 1154 aa6.08□□□□□ -1.44
SCFD1-216ENST00000555550 GPR27Q9NS67 375 aa6.08□□□□□ -1.44
SCFD1-216ENST00000555550 ESYT3A0FGR9 886 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 RAD17O75943 681 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 CR2P20023 1033 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 RRADP55042 308 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 PPP2R2AP63151 447 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 ZNF568Q3ZCX4 644 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 ANKS3Q6ZW76 656 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 USP53Q70EK8 1073 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 EEPD1Q7L9B9 569 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 ZNF575Q86XF7 245 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 REXO1L1PQ8IX06 675 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 IL17DQ8TAD2 202 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 KCTD13Q8WZ19 329 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 OR14A2Q96R54 314 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 IER2Q9BTL4 223 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 PHF20Q9BVI0 1012 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 SLC39A2Q9NP94 309 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 ST7Q9NRC1 585 aa6.07□□□□□ -1.44
SCFD1-216ENST00000555550 ZNF839A8K0R7 811 aa6.06□□□□□ -1.44
SCFD1-216ENST00000555550 ACOT7O00154 380 aa6.06□□□□□ -1.44
SCFD1-216ENST00000555550 CDC14BO60729 498 aa6.06□□□□□ -1.44
SCFD1-216ENST00000555550 GJB6O95452 261 aa6.06□□□□□ -1.44
SCFD1-216ENST00000555550 KCNT2Q6UVM3 1135 aa6.06□□□□□ -1.44
SCFD1-216ENST00000555550 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.06□□□□□ -1.44
SCFD1-216ENST00000555550 UHMK1Q8TAS1 419 aaKnown RBP6.06□□□□□ -1.44
SCFD1-216ENST00000555550 PPP1R1BQ9UD71 204 aaPredicted RBP6.06□□□□□ -1.44
SCFD1-216ENST00000555550 AGRPO00253 132 aa6.05□□□□□ -1.44
SCFD1-216ENST00000555550 DLX3O60479 287 aa6.05□□□□□ -1.44
SCFD1-216ENST00000555550 GNAT1P11488 350 aa6.05□□□□□ -1.44
SCFD1-216ENST00000555550 C12orf65Q9H3J6 166 aaKnown RBP6.05□□□□□ -1.44
SCFD1-216ENST00000555550 DSEQ9UL01 958 aa6.05□□□□□ -1.44
SCFD1-216ENST00000555550 OAZ3Q9UMX2 235 aa6.05□□□□□ -1.44
SCFD1-216ENST00000555550 A0A087X1B8 175 aa6.04□□□□□ -1.44
SCFD1-216ENST00000555550 POLD1P28340 1107 aa6.04□□□□□ -1.44
SCFD1-216ENST00000555550 NANOS3P60323 173 aaKnown RBP6.04□□□□□ -1.44
SCFD1-216ENST00000555550 ZC3H6P61129 1189 aaKnown RBP6.04□□□□□ -1.44
SCFD1-216ENST00000555550 SPIRE1Q08AE8 756 aa6.04□□□□□ -1.44
SCFD1-216ENST00000555550 MAP4K2Q12851 820 aa6.04□□□□□ -1.44
SCFD1-216ENST00000555550 MAMDC4Q6UXC1 1216 aa6.04□□□□□ -1.44
SCFD1-216ENST00000555550 POLNQ7Z5Q5 900 aa6.04□□□□□ -1.44
SCFD1-216ENST00000555550 ZNF808Q8N4W9 903 aaPredicted RBP6.04□□□□□ -1.44
SCFD1-216ENST00000555550 AMER2Q8N7J2 671 aa6.04□□□□□ -1.44
SCFD1-216ENST00000555550 GMLQ99445 158 aa6.04□□□□□ -1.44
SCFD1-216ENST00000555550 PLA2G12BQ9BX93 195 aa6.04□□□□□ -1.44
SCFD1-216ENST00000555550 IGSF5Q9NSI5 407 aa6.04□□□□□ -1.44
SCFD1-216ENST00000555550 A0A1W2PQU0 124 aa6.03□□□□□ -1.44
SCFD1-216ENST00000555550 MATN2O00339 956 aa6.03□□□□□ -1.44
SCFD1-216ENST00000555550 GRK2P25098 689 aa6.03□□□□□ -1.44
SCFD1-216ENST00000555550 GRK3P35626 688 aa6.03□□□□□ -1.44
SCFD1-216ENST00000555550 TOP3AQ13472 1001 aaPredicted RBP6.03□□□□□ -1.44
SCFD1-216ENST00000555550 TBR1Q16650 682 aa6.03□□□□□ -1.44
SCFD1-216ENST00000555550 NAALADL2Q58DX5 795 aa6.03□□□□□ -1.44
SCFD1-216ENST00000555550 FNDC7Q5VTL7 733 aa6.03□□□□□ -1.44
SCFD1-216ENST00000555550 CELF2-AS1Q8N7Q2 184 aa6.03□□□□□ -1.44
SCFD1-216ENST00000555550 TRIM55Q9BYV6 548 aa6.03□□□□□ -1.44
SCFD1-216ENST00000555550 PDGFDQ9GZP0 370 aaPredicted RBP6.03□□□□□ -1.44
SCFD1-216ENST00000555550 MMRN2Q9H8L6 949 aa6.03□□□□□ -1.44
SCFD1-216ENST00000555550 NR2E1Q9Y466 385 aa6.03□□□□□ -1.44
SCFD1-216ENST00000555550 STK10O94804 968 aaKnown RBP6.02□□□□□ -1.45
SCFD1-216ENST00000555550 INHBCP55103 352 aa6.02□□□□□ -1.45
SCFD1-216ENST00000555550 FOXL1Q12952 345 aa6.02□□□□□ -1.45
SCFD1-216ENST00000555550 DDR2Q16832 855 aa6.02□□□□□ -1.45
SCFD1-216ENST00000555550 SLC10A6Q3KNW5 377 aa6.02□□□□□ -1.45
SCFD1-216ENST00000555550 LBX2Q6XYB7 198 aa6.02□□□□□ -1.45
SCFD1-216ENST00000555550 KCTD1Q719H9 257 aa6.02□□□□□ -1.45
SCFD1-216ENST00000555550 CACTINQ8WUQ7 758 aaKnown RBP6.02□□□□□ -1.45
SCFD1-216ENST00000555550 FAM89AQ96GI7 184 aa6.02□□□□□ -1.45
SCFD1-216ENST00000555550 CD244Q9BZW8 370 aa6.02□□□□□ -1.45
SCFD1-216ENST00000555550 EPN3Q9H201 632 aa6.02□□□□□ -1.45
SCFD1-216ENST00000555550 NUB1Q9Y5A7 615 aa6.02□□□□□ -1.45
SCFD1-216ENST00000555550 SLC30A1Q9Y6M5 507 aa6.02□□□□□ -1.45
SCFD1-216ENST00000555550 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.01□□□□□ -1.45
SCFD1-216ENST00000555550 HIBADHP31937 336 aaKnown RBP6.01□□□□□ -1.45
SCFD1-216ENST00000555550 EPHA5P54756 1037 aa6.01□□□□□ -1.45
SCFD1-216ENST00000555550 PURAQ00577 322 aaKnown RBP6.01□□□□□ -1.45
SCFD1-216ENST00000555550 DUSP8Q13202 625 aa6.01□□□□□ -1.45
SCFD1-216ENST00000555550 KRTAP15-1Q3LI76 137 aa6.01□□□□□ -1.45
SCFD1-216ENST00000555550 HABP4Q5JVS0 413 aaKnown RBP6.01□□□□□ -1.45
SCFD1-216ENST00000555550 RSPO2Q6UXX9 243 aaPredicted RBP6.01□□□□□ -1.45
SCFD1-216ENST00000555550 CKAP2LQ8IYA6 745 aa6.01□□□□□ -1.45
SCFD1-216ENST00000555550 LARP4BQ92615 738 aaKnown RBP6.01□□□□□ -1.45
SCFD1-216ENST00000555550 PCSK5Q92824 1860 aa6□□□□□ -1.45
SCFD1-216ENST00000555550 U2SURPO15042 1029 aaKnown RBP6□□□□□ -1.45
SCFD1-216ENST00000555550 PDE6AP16499 860 aa6□□□□□ -1.45
SCFD1-216ENST00000555550 DBPQ10586 325 aaPredicted RBP6□□□□□ -1.45
SCFD1-216ENST00000555550 TUBA3CQ13748 450 aa6□□□□□ -1.45
SCFD1-216ENST00000555550 KIZQ2M2Z5 673 aa6□□□□□ -1.45
SCFD1-216ENST00000555550 WDR72Q3MJ13 1102 aa6□□□□□ -1.45
SCFD1-216ENST00000555550 ZMAT1Q5H9K5 638 aa6□□□□□ -1.45
SCFD1-216ENST00000555550 TUBA3EQ6PEY2 450 aa6□□□□□ -1.45
SCFD1-216ENST00000555550 LARP4Q71RC2 724 aaKnown RBP eCLIP6□□□□□ -1.45
SCFD1-216ENST00000555550 LDLRAD3Q86YD5 345 aa6□□□□□ -1.45
SCFD1-216ENST00000555550 DNAJC10Q8IXB1 793 aa6□□□□□ -1.45
SCFD1-216ENST00000555550 SH3RF2Q8TEC5 729 aa6□□□□□ -1.45
SCFD1-216ENST00000555550 TANGO6Q9C0B7 1094 aa6□□□□□ -1.45
SCFD1-216ENST00000555550 TCRBV5S4A2TA0A5A2 114 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms