RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.6□□□□□ -0.394e-7■□□□□ 9.3
SHMT2-216ENST00000554975 MICU3Q86XE3 530 aa12.6□□□□□ -0.39
SHMT2-216ENST00000554975 CHURC1Q8WUH1 139 aa12.6□□□□□ -0.39
SHMT2-216ENST00000554975 ESR2Q92731 530 aa12.6□□□□□ -0.39
SHMT2-216ENST00000554975 WNT8BQ93098 351 aa12.6□□□□□ -0.39
SHMT2-216ENST00000554975 MRPL38Q96DV4 380 aaKnown RBP12.6□□□□□ -0.39
SHMT2-216ENST00000554975 GMCL1Q96IK5 515 aa12.6□□□□□ -0.39
SHMT2-216ENST00000554975 UBAC1Q9BSL1 405 aa12.6□□□□□ -0.39
SHMT2-216ENST00000554975 ALG1Q9BT22 464 aa12.6□□□□□ -0.39
SHMT2-216ENST00000554975 CCPG1Q9ULG6 757 aa12.6□□□□□ -0.39
SHMT2-216ENST00000554975 SYNPO2Q9UMS6 1093 aa12.6□□□□□ -0.39
SHMT2-216ENST00000554975 RIF1Q5UIP0 2472 aaKnown RBP12.6□□□□□ -0.39
SHMT2-216ENST00000554975 SPTLC2O15270 562 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 PPP6R2O75170 966 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 NR1I2O75469 434 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 CALM1P0DP23 149 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 CALM2P0DP24 149 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 CALM3P0DP25 149 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 CKBP12277 381 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 FDPSP14324 419 aaKnown RBP12.59□□□□□ -0.39
SHMT2-216ENST00000554975 SELPP16109 830 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 IFNAR1P17181 557 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 XBP1P17861 261 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 CDC25BP30305 580 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 SLC1A4P43007 532 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 SSRP1Q08945 709 aaKnown RBP12.59□□□□□ -0.39
SHMT2-216ENST00000554975 COL19A1Q14993 1142 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 RTN1Q16799 776 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 PUS10Q3MIT2 529 aaKnown RBP12.59□□□□□ -0.39
SHMT2-216ENST00000554975 ANO6Q4KMQ2 910 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 EP400NLQ6ZTU2 488 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 CHST3Q7LGC8 479 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 ADHFE1Q8IWW8 467 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 CAGE1Q8TC20 777 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 PABPC5Q96DU9 382 aaKnown RBP12.59□□□□□ -0.39
SHMT2-216ENST00000554975 LY9Q9HBG7 655 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 IL17RBQ9NRM6 502 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 DCHS1Q96JQ0 3298 aa12.59□□□□□ -0.39
SHMT2-216ENST00000554975 FAM186AA6NE01 2351 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 DMDP11532 3685 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 ABHD14A-ACY1A0A1B0GW23 586 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 FGRP09769 529 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 LTBRP36941 435 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 ZNF165P49910 485 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 FOSBP53539 338 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 RBL2Q08999 1139 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 TCF15Q12870 199 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 MKRN4PQ13434 485 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-216ENST00000554975 CLUL1Q15846 466 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 CCDC96Q2M329 555 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 TTBK2Q6IQ55 1244 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 SARM1Q6SZW1 724 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 CYB5R4Q7L1T6 521 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 LINC00301Q8NCQ3 95 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 BANK1Q8NDB2 785 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 SP7Q8TDD2 431 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-216ENST00000554975 KAT2BQ92831 832 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 CCDC34Q96HJ3 373 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 TIGD1Q96MW7 591 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 ALG13Q9NP73 1137 aaKnown RBP12.58□□□□□ -0.4
SHMT2-216ENST00000554975 RBM28Q9NW13 759 aaKnown RBP12.58□□□□□ -0.4
SHMT2-216ENST00000554975 PRKAG3Q9UGI9 489 aa12.58□□□□□ -0.4
SHMT2-216ENST00000554975 HOOK1Q9UJC3 728 aaKnown RBP12.58□□□□□ -0.4
SHMT2-216ENST00000554975 BAZ2BQ9UIF8 2168 aaKnown RBP12.57□□□□□ -0.4
SHMT2-216ENST00000554975 PLA2G6O60733 806 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 DEXIO95424 95 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 BMP15O95972 392 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 ICAM1P05362 532 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 CALML3P27482 149 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 HTRA4P83105 476 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-216ENST00000554975 DLX2Q07687 328 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-216ENST00000554975 TRIM71Q2Q1W2 868 aaKnown RBP12.57□□□□□ -0.4
SHMT2-216ENST00000554975 TPRNQ4KMQ1 711 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 EPC2Q52LR7 807 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 HERC4Q5GLZ8 1057 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-216ENST00000554975 RCSD1Q6JBY9 416 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 SESTD1Q86VW0 696 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 IQCA1Q86XH1 822 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 CCDC155Q8N6L0 562 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 IGDCC4Q8TDY8 1250 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 PIBF1Q8WXW3 757 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 MFSD14AQ96MC6 490 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 ZKSCAN3Q9BRR0 538 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 RANBP17Q9H2T7 1088 aaKnown RBP12.57□□□□□ -0.4
SHMT2-216ENST00000554975 CBX8Q9HC52 389 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 FAM86C1Q9NVL1 165 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 CLDND1Q9NY35 253 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 ADD3Q9UEY8 706 aaKnown RBP12.57□□□□□ -0.4
SHMT2-216ENST00000554975 CEP131Q9UPN4 1083 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.57□□□□□ -0.45e-7■■□□□ 13.5
SHMT2-216ENST00000554975 MORC2Q9Y6X9 1032 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-216ENST00000554975 KIAA1671Q9BY89 1806 aa12.57□□□□□ -0.4
SHMT2-216ENST00000554975 BECN2A8MW95 431 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 NKRFO15226 690 aaKnown RBP eCLIP12.56□□□□□ -0.4
SHMT2-216ENST00000554975 NEMFO60524 1076 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 KPNA6O60684 536 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 LGR5O75473 907 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 DDAH1O94760 285 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 MMP3P08254 477 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 TXNP10599 105 aaKnown RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms