RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 PCDHB6Q9Y5E3 794 aa16.36■□□□□ 0.21
SHMT2-208ENST00000553868 ZNF536O15090 1300 aa16.36■□□□□ 0.21
SHMT2-208ENST00000553868 DMDP11532 3685 aa16.35■□□□□ 0.21
SHMT2-208ENST00000553868 A0A1W2PQ27 194 aa16.35■□□□□ 0.21
SHMT2-208ENST00000553868 A0A1W2PQ64 194 aa16.35■□□□□ 0.21
SHMT2-208ENST00000553868 A0A1W2PQD8 194 aa16.35■□□□□ 0.21
SHMT2-208ENST00000553868 RBAK-RBAKDNI3L0D1 243 aa16.35■□□□□ 0.21
SHMT2-208ENST00000553868 LAD1O00515 517 aa16.35■□□□□ 0.21
SHMT2-208ENST00000553868 MEIS2O14770 477 aa16.35■□□□□ 0.21
SHMT2-208ENST00000553868 GFRA3O60609 400 aa16.35■□□□□ 0.21
SHMT2-208ENST00000553868 CUTAO60888 179 aa16.35■□□□□ 0.21
SHMT2-208ENST00000553868 ALAS1P13196 640 aa16.35■□□□□ 0.21
SHMT2-208ENST00000553868 GCFC2P16383 781 aaKnown RBP16.35■□□□□ 0.21
SHMT2-208ENST00000553868 STAT3P40763 770 aa16.35■□□□□ 0.21
SHMT2-208ENST00000553868 PSMC6P62333 389 aa16.35■□□□□ 0.21
SHMT2-208ENST00000553868 ADALQ6DHV7 355 aa16.35■□□□□ 0.21
SHMT2-208ENST00000553868 TMCO2Q7Z6W1 182 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-208ENST00000553868 KRI1Q8N9T8 703 aaKnown RBP16.35■□□□□ 0.21
SHMT2-208ENST00000553868 TEX13BQ9BXU2 312 aa16.35■□□□□ 0.21
SHMT2-208ENST00000553868 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-208ENST00000553868 ASTN1O14525 1302 aa16.35■□□□□ 0.21
SHMT2-208ENST00000553868 PTPRSQ13332 1948 aa16.35■□□□□ 0.21
SHMT2-208ENST00000553868 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-208ENST00000553868 H3BQ06 376 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-208ENST00000553868 ADAMTS3O15072 1205 aa16.34■□□□□ 0.21
SHMT2-208ENST00000553868 GADD45BO75293 160 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-208ENST00000553868 CFBP00751 764 aa16.34■□□□□ 0.21
SHMT2-208ENST00000553868 CYP2C9P11712 490 aa16.34■□□□□ 0.21
SHMT2-208ENST00000553868 COPB2P35606 906 aa16.34■□□□□ 0.21
SHMT2-208ENST00000553868 ZNF174Q15697 407 aa16.34■□□□□ 0.21
SHMT2-208ENST00000553868 LETM2Q2VYF4 491 aa16.34■□□□□ 0.21
SHMT2-208ENST00000553868 USP17L6PQ6QN14 398 aa16.34■□□□□ 0.21
SHMT2-208ENST00000553868 MAMDC4Q6UXC1 1216 aa16.34■□□□□ 0.21
SHMT2-208ENST00000553868 CCDC73Q6ZRK6 1079 aa16.34■□□□□ 0.21
SHMT2-208ENST00000553868 REPS2Q8NFH8 660 aa16.34■□□□□ 0.21
SHMT2-208ENST00000553868 MFSD14AQ96MC6 490 aa16.34■□□□□ 0.21
SHMT2-208ENST00000553868 SLC9A7Q96T83 725 aa16.34■□□□□ 0.21
SHMT2-208ENST00000553868 ANO3Q9BYT9 981 aa16.34■□□□□ 0.21
SHMT2-208ENST00000553868 PCDHA7Q9UN72 937 aa16.34■□□□□ 0.21
SHMT2-208ENST00000553868 TECTAO75443 2155 aa16.34■□□□□ 0.21
SHMT2-208ENST00000553868 PTPRZ1P23471 2315 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-208ENST00000553868 OPLAHO14841 1288 aa16.33■□□□□ 0.2
SHMT2-208ENST00000553868 MCM7P33993 719 aa16.33■□□□□ 0.2
SHMT2-208ENST00000553868 USP11P51784 963 aa16.33■□□□□ 0.2
SHMT2-208ENST00000553868 ATP2C1P98194 919 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-208ENST00000553868 GHRHRQ02643 423 aa16.33■□□□□ 0.2
SHMT2-208ENST00000553868 TCF15Q12870 199 aa16.33■□□□□ 0.2
SHMT2-208ENST00000553868 ARL6IP4Q66PJ3 421 aaKnown RBP16.33■□□□□ 0.2
SHMT2-208ENST00000553868 SNRNP48Q6IEG0 339 aaKnown RBP16.33■□□□□ 0.2
SHMT2-208ENST00000553868 MSL3Q8N5Y2 521 aaKnown RBP16.33■□□□□ 0.2
SHMT2-208ENST00000553868 PGBD1Q96JS3 809 aa16.33■□□□□ 0.2
SHMT2-208ENST00000553868 TRERF1Q96PN7 1200 aa16.33■□□□□ 0.2
SHMT2-208ENST00000553868 RNF146Q9NTX7 359 aa16.33■□□□□ 0.2
SHMT2-208ENST00000553868 ZNF214Q9UL59 606 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-208ENST00000553868 TCHHQ07283 1943 aa16.33■□□□□ 0.2
SHMT2-208ENST00000553868 NEMFO60524 1076 aa16.32■□□□□ 0.2
SHMT2-208ENST00000553868 CCNT1O60563 726 aaKnown RBP16.32■□□□□ 0.2
SHMT2-208ENST00000553868 MARCKSP29966 332 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-208ENST00000553868 HSD17B4P51659 736 aa16.32■□□□□ 0.2
SHMT2-208ENST00000553868 PTPN5P54829 565 aa16.32■□□□□ 0.2
SHMT2-208ENST00000553868 ZP2Q05996 745 aa16.32■□□□□ 0.2
SHMT2-208ENST00000553868 PTGDRQ13258 359 aa16.32■□□□□ 0.2
SHMT2-208ENST00000553868 PPP4R3AQ6IN85 833 aa16.32■□□□□ 0.2
SHMT2-208ENST00000553868 MOXD1Q6UVY6 613 aa16.32■□□□□ 0.2
SHMT2-208ENST00000553868 ZNF579Q8NAF0 562 aaKnown RBP16.32■□□□□ 0.2
SHMT2-208ENST00000553868 CHST13Q8NET6 341 aa16.32■□□□□ 0.2
SHMT2-208ENST00000553868 TET1Q8NFU7 2136 aa16.32■□□□□ 0.2
SHMT2-208ENST00000553868 GPT2Q8TD30 523 aa16.32■□□□□ 0.2
SHMT2-208ENST00000553868 CLEC4DQ8WXI8 215 aa16.32■□□□□ 0.2
SHMT2-208ENST00000553868 MRPS27Q92552 414 aaKnown RBP16.32■□□□□ 0.2
SHMT2-208ENST00000553868 FGD4Q96M96 766 aa16.32■□□□□ 0.2
SHMT2-208ENST00000553868 SUGCTQ9HAC7 445 aa16.32■□□□□ 0.2
SHMT2-208ENST00000553868 TRMT13Q9NUP7 481 aaKnown RBP16.32■□□□□ 0.2
SHMT2-208ENST00000553868 FBXO40Q9UH90 709 aa16.32■□□□□ 0.2
SHMT2-208ENST00000553868 RIPK3Q9Y572 518 aa16.32■□□□□ 0.2
SHMT2-208ENST00000553868 SRPRBQ9Y5M8 271 aaKnown RBP16.32■□□□□ 0.2
SHMT2-208ENST00000553868 DNAJC25-GNG10A0A024R161 153 aa16.31■□□□□ 0.2
SHMT2-208ENST00000553868 PFKMP08237 780 aa16.31■□□□□ 0.2
SHMT2-208ENST00000553868 CMA1P23946 247 aa16.31■□□□□ 0.2
SHMT2-208ENST00000553868 SREBF1P36956 1147 aa16.31■□□□□ 0.2
SHMT2-208ENST00000553868 PRPHP41219 470 aa16.31■□□□□ 0.2
SHMT2-208ENST00000553868 FCHSD1Q86WN1 690 aa16.31■□□□□ 0.2
SHMT2-208ENST00000553868 PHOSPHO2Q8TCD6 241 aa16.31■□□□□ 0.2
SHMT2-208ENST00000553868 ACAD9Q9H845 621 aa16.31■□□□□ 0.2
SHMT2-208ENST00000553868 HOMER2Q9NSB8 354 aa16.31■□□□□ 0.2
SHMT2-208ENST00000553868 LMCD1Q9NZU5 365 aa16.31■□□□□ 0.2
SHMT2-208ENST00000553868 MUTYHQ9UIF7 546 aa16.31■□□□□ 0.2
SHMT2-208ENST00000553868 FBXO2Q9UK22 296 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-208ENST00000553868 ACTN1P12814 892 aa16.3■□□□□ 0.2
SHMT2-208ENST00000553868 HOXA13P31271 388 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-208ENST00000553868 ARHGAP4P98171 946 aa16.3■□□□□ 0.2
SHMT2-208ENST00000553868 TPRNQ4KMQ1 711 aa16.3■□□□□ 0.2
SHMT2-208ENST00000553868 FSIP1Q8NA03 581 aa16.3■□□□□ 0.2
SHMT2-208ENST00000553868 KATNBL1Q9H079 304 aa16.3■□□□□ 0.2
SHMT2-208ENST00000553868 ABHD16BQ9H3Z7 469 aa16.3■□□□□ 0.2
SHMT2-208ENST00000553868 DDX19AQ9NUU7 478 aaKnown RBP16.3■□□□□ 0.2
SHMT2-208ENST00000553868 FAM13BQ9NYF5 915 aa16.3■□□□□ 0.2
SHMT2-208ENST00000553868 NFIBO00712 420 aa16.29■□□□□ 0.2
SHMT2-208ENST00000553868 CYP3A4P08684 503 aa16.29■□□□□ 0.2
SHMT2-208ENST00000553868 OR52Z1P0C646 297 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms