RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 RSPH3Q86UC2 560 aa13.6□□□□□ -0.23
SRP54-203ENST00000553544 SUGP1Q8IWZ8 645 aaKnown RBP13.6□□□□□ -0.23
SRP54-203ENST00000553544 ZNF654Q8IZM8 581 aa13.6□□□□□ -0.23
SRP54-203ENST00000553544 TMTC2Q8N394 836 aa13.6□□□□□ -0.23
SRP54-203ENST00000553544 IL31RAQ8NI17 732 aa13.6□□□□□ -0.23
SRP54-203ENST00000553544 PIGSQ96S52 555 aa13.6□□□□□ -0.23
SRP54-203ENST00000553544 GPR20Q99678 358 aa13.6□□□□□ -0.23
SRP54-203ENST00000553544 ALG13Q9NP73 1137 aaKnown RBP13.6□□□□□ -0.23
SRP54-203ENST00000553544 NRCAMQ92823 1304 aa13.6□□□□□ -0.23
SRP54-203ENST00000553544 ZFHX2Q9C0A1 2572 aaPredicted RBP13.59□□□□□ -0.23
SRP54-203ENST00000553544 SPATA31C2B4DYI2 1134 aa13.59□□□□□ -0.23
SRP54-203ENST00000553544 LINC01565O15544 149 aa13.59□□□□□ -0.23
SRP54-203ENST00000553544 TBX10O75333 385 aa13.59□□□□□ -0.23
SRP54-203ENST00000553544 DDAH1O94760 285 aa13.59□□□□□ -0.23
SRP54-203ENST00000553544 MMP1P03956 469 aa13.59□□□□□ -0.23
SRP54-203ENST00000553544 SMARCA1P28370 1054 aa13.59□□□□□ -0.23
SRP54-203ENST00000553544 ICAM3P32942 547 aa13.59□□□□□ -0.23
SRP54-203ENST00000553544 ADAM17P78536 824 aa13.59□□□□□ -0.23
SRP54-203ENST00000553544 ZXDAP98168 799 aa13.59□□□□□ -0.23
SRP54-203ENST00000553544 UTP14CQ5TAP6 766 aaKnown RBP13.59□□□□□ -0.23
SRP54-203ENST00000553544 TAF2Q6P1X5 1199 aa13.59□□□□□ -0.23
SRP54-203ENST00000553544 CASC1Q6TDU7 716 aa13.59□□□□□ -0.23
SRP54-203ENST00000553544 PRSS33Q8NF86 280 aa13.59□□□□□ -0.23
SRP54-203ENST00000553544 P2RX5Q93086 422 aa13.59□□□□□ -0.23
SRP54-203ENST00000553544 ZNF689Q96CS4 500 aaPredicted RBP13.59□□□□□ -0.23
SRP54-203ENST00000553544 EHMT1Q9H9B1 1298 aa13.59□□□□□ -0.23
SRP54-203ENST00000553544 ADGRA3Q8IWK6 1321 aa13.59□□□□□ -0.23
SRP54-203ENST00000553544 PNMA6FA0A0J9YX94 578 aa13.58□□□□□ -0.24
SRP54-203ENST00000553544 LOC730098B7Z3J9 87 aa13.58□□□□□ -0.24
SRP54-203ENST00000553544 DGKIO75912 1065 aa13.58□□□□□ -0.24
SRP54-203ENST00000553544 GHRP10912 638 aa13.58□□□□□ -0.24
SRP54-203ENST00000553544 CAMK1Q14012 370 aa13.58□□□□□ -0.24
SRP54-203ENST00000553544 RNF20Q5VTR2 975 aa13.58□□□□□ -0.24
SRP54-203ENST00000553544 HOMER1Q86YM7 354 aa13.58□□□□□ -0.24
SRP54-203ENST00000553544 EFHBQ8N7U6 833 aa13.58□□□□□ -0.24
SRP54-203ENST00000553544 LMBR1Q8WVP7 490 aa13.58□□□□□ -0.24
SRP54-203ENST00000553544 MSLNLQ96KJ4 702 aa13.58□□□□□ -0.24
SRP54-203ENST00000553544 MYL10Q9BUA6 226 aa13.58□□□□□ -0.24
SRP54-203ENST00000553544 SPZ1Q9BXG8 430 aa13.58□□□□□ -0.24
SRP54-203ENST00000553544 IRF2BPLQ9H1B7 796 aa13.58□□□□□ -0.24
SRP54-203ENST00000553544 RTEL1Q9NZ71 1219 aa13.58□□□□□ -0.24
SRP54-203ENST00000553544 TECTAO75443 2155 aa13.58□□□□□ -0.24
SRP54-203ENST00000553544 COL4A6Q14031 1691 aa13.57□□□□□ -0.24
SRP54-203ENST00000553544 FIBPO43427 364 aa13.57□□□□□ -0.24
SRP54-203ENST00000553544 CSPG5O95196 566 aa13.57□□□□□ -0.24
SRP54-203ENST00000553544 KIF5BP33176 963 aa13.57□□□□□ -0.24
SRP54-203ENST00000553544 MRPS9P82933 396 aaKnown RBP13.57□□□□□ -0.24
SRP54-203ENST00000553544 EXOSC10Q01780 885 aaKnown RBP13.57□□□□□ -0.24
SRP54-203ENST00000553544 COASYQ13057 564 aa13.57□□□□□ -0.24
SRP54-203ENST00000553544 LPIN1Q14693 890 aa13.57□□□□□ -0.24
SRP54-203ENST00000553544 SGMS1Q86VZ5 419 aa13.57□□□□□ -0.24
SRP54-203ENST00000553544 RASEFQ8IZ41 740 aa13.57□□□□□ -0.24
SRP54-203ENST00000553544 FBXL6Q8N531 539 aa13.57□□□□□ -0.24
SRP54-203ENST00000553544 CTCFLQ8NI51 663 aaPredicted RBP13.57□□□□□ -0.24
SRP54-203ENST00000553544 SPPL3Q8TCT6 385 aa13.57□□□□□ -0.24
SRP54-203ENST00000553544 INPP4AQ96PE3 977 aaPredicted RBP13.57□□□□□ -0.24
SRP54-203ENST00000553544 NEK1Q96PY6 1258 aa13.57□□□□□ -0.24
SRP54-203ENST00000553544 SENP7Q9BQF6 1050 aa13.57□□□□□ -0.24
SRP54-203ENST00000553544 RC3H2Q9HBD1 1191 aaKnown RBP13.57□□□□□ -0.24
SRP54-203ENST00000553544 CLEC1BQ9P126 229 aa13.57□□□□□ -0.24
SRP54-203ENST00000553544 USP34Q70CQ2 3546 aa13.56□□□□□ -0.24
SRP54-203ENST00000553544 CCDC69A6NI79 296 aa13.56□□□□□ -0.24
SRP54-203ENST00000553544 CALM1P0DP23 149 aa13.56□□□□□ -0.24
SRP54-203ENST00000553544 CALM2P0DP24 149 aa13.56□□□□□ -0.24
SRP54-203ENST00000553544 CALM3P0DP25 149 aa13.56□□□□□ -0.24
SRP54-203ENST00000553544 TCF15Q12870 199 aa13.56□□□□□ -0.24
SRP54-203ENST00000553544 CBX2Q14781 532 aaPredicted RBP13.56□□□□□ -0.24
SRP54-203ENST00000553544 ADCK5Q3MIX3 580 aa13.56□□□□□ -0.24
SRP54-203ENST00000553544 SRBD1Q8N5C6 995 aaKnown RBP13.56□□□□□ -0.24
SRP54-203ENST00000553544 SMRP1Q8NCR6 262 aa13.56□□□□□ -0.24
SRP54-203ENST00000553544 GIMAP8Q8ND71 665 aaPredicted RBP13.56□□□□□ -0.24
SRP54-203ENST00000553544 KCNB2Q92953 911 aa13.56□□□□□ -0.24
SRP54-203ENST00000553544 LZTS2Q9BRK4 669 aa13.56□□□□□ -0.24
SRP54-203ENST00000553544 LRRC2Q9BYS8 371 aa13.56□□□□□ -0.24
SRP54-203ENST00000553544 RNF216Q9NWF9 866 aaPredicted RBP13.56□□□□□ -0.24
SRP54-203ENST00000553544 DOCK5Q9H7D0 1870 aa13.56□□□□□ -0.24
SRP54-203ENST00000553544 PTPRZ1P23471 2315 aaPredicted RBP13.55□□□□□ -0.24
SRP54-203ENST00000553544 CFAP54Q96N23 3096 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 PLEKHA8P1O95397 391 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 ITGB1P05556 798 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 STAG3L1P0CL83 205 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 DNAJB1P25685 340 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 NRIP1P48552 1158 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 GNAQP50148 359 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 SIGLEC14Q08ET2 396 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 MGAT3Q09327 533 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 FBXO47Q5MNV8 452 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 IER5Q5VY09 327 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 XRRA1Q6P2D8 792 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 NFXL1Q6ZNB6 911 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 RUFY4Q6ZNE9 571 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 TSHZ1Q6ZSZ6 1077 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 DHX32Q7L7V1 743 aaKnown RBP13.55□□□□□ -0.24
SRP54-203ENST00000553544 RBM23Q86U06 439 aaKnown RBP13.55□□□□□ -0.24
SRP54-203ENST00000553544 NLRX1Q86UT6 975 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 TRIM50Q86XT4 487 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 CMTR2Q8IYT2 770 aaKnown RBP13.55□□□□□ -0.24
SRP54-203ENST00000553544 KLHL23Q8NBE8 558 aa13.55□□□□□ -0.24
SRP54-203ENST00000553544 PHF7Q9BWX1 381 aaPredicted RBP13.55□□□□□ -0.24
SRP54-203ENST00000553544 FTHL17Q9BXU8 183 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms