RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	TESMIN	Q9Y4I5	508 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	USP47	Q96K76	1375 aa		3.37	□□□□□ -1.87
PTCH1-223	ENST00000551623	FAM208A	Q9UK61	1670 aa	Known RBP	3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	DOT1L	Q8TEK3	1739 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	VIRMA	Q69YN4	1812 aa	Known RBP	3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	GLTPD2	A6NH11	291 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	RASSF10	A6NK89	507 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623		F6X3S4	739 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	B4GALT3	O60512	393 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	LDHB	P07195	334 aa	Known RBP	3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	CTSH	P09668	335 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	ACR	P10323	421 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	RAG1	P15918	1043 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	LBX1	P52954	281 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	ATXN1	P54253	815 aa	Known RBP	3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	RAD51AP2	Q09MP3	1159 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	ARSH	Q5FYA8	562 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	PLEKHH3	Q7Z736	793 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	CIR1	Q86X95	450 aa	Predicted RBP	3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	TXNDC5	Q8NBS9	432 aa	Known RBP	3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	IGDCC4	Q8TDY8	1250 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	GATAD2B	Q8WXI9	593 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	DDX11	Q96FC9	970 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	ZNF512B	Q96KM6	892 aa	Predicted RBP	3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	CDK19	Q9BWU1	502 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	RXFP1	Q9HBX9	757 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	UBR3	Q6ZT12	1888 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	TTC21A	Q8NDW8	1320 aa		3.36	□□□□□ -1.87
PTCH1-223	ENST00000551623	TAF1L	Q8IZX4	1826 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	F13A1	P00488	732 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	GSTM1	P09488	218 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	GLI4	P10075	376 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	GNA15	P30679	374 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	MAP2K1	Q02750	393 aa	Predicted RBP	3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	ABHD18	Q0P651	414 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	CYP2R1	Q6VVX0	501 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	DNAJC10	Q8IXB1	793 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	PHC3	Q8NDX5	983 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	WWC2-AS2	Q96NR7	200 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	DUSP9	Q99956	384 aa	Known RBP	3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	GORASP1	Q9BQQ3	440 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	RNF181	Q9P0P0	153 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	ZNF831	Q5JPB2	1677 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	CGNL1	Q0VF96	1302 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	MAP3K19	Q56UN5	1328 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	LTBP1	Q14766	1721 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	INSR	P06213	1382 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	PALLD	Q8WX93	1383 aa		3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	SMG6	Q86US8	1419 aa	Known RBP	3.35	□□□□□ -1.87
PTCH1-223	ENST00000551623	CUL9	Q8IWT3	2517 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	ADAMTS7	Q9UKP4	1686 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	C4A	P0C0L4	1744 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	ADAMTSL1	Q8N6G6	1762 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	PATE3	B3GLJ2	98 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	CLEC3A	O75596	197 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	GSN	P06396	782 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	CYP2C8	P10632	490 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	LMO1	P25800	156 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	POLR2B	P30876	1174 aa	Known RBP	3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	TAGLN	Q01995	201 aa	Known RBP	3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	DPT	Q07507	201 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	TRIM26	Q12899	539 aa	Predicted RBP	3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	FOXE3	Q13461	319 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	CAMK2G	Q13555	558 aa	Predicted RBP	3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	SLC9A5	Q14940	896 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	USP48	Q86UV5	1035 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	AMER2	Q8N7J2	671 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	GCC1	Q96CN9	775 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	LCOR	Q96JN0	433 aa	Predicted RBP	3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	FAM161B	Q96MY7	647 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	C11orf84	Q9BUA3	381 aa	Predicted RBP	3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	SLC12A9	Q9BXP2	914 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	DLL4	Q9NR61	685 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	FBXL21	Q9UKT6	434 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	PCDHB12	Q9Y5F1	795 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	AK5	Q9Y6K8	562 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	MAP2	P11137	1827 aa	Known RBP	3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	TTC21B	Q7Z4L5	1316 aa		3.34	□□□□□ -1.87
PTCH1-223	ENST00000551623	MEGF6	O75095	1541 aa		3.34	□□□□□ -1.88
PTCH1-223	ENST00000551623	RGPD5	Q99666	1765 aa		3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623		A0A0G2JLW4	131 aa		3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	C9orf118	A6NHY6	69 aa		3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	FGF10	O15520	208 aa	Predicted RBP	3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	CA12	O43570	354 aa		3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	PPFIA2	O75334	1257 aa		3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	MMP10	P09238	476 aa		3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	DPEP1	P16444	411 aa		3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	LMNB2	Q03252	620 aa		3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	MIIP	Q5JXC2	388 aa		3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	LRCH2	Q5VUJ6	765 aa		3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	CDCP2	Q5VXM1	449 aa		3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	IGFL4	Q6B9Z1	124 aa		3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	CABP7	Q86V35	215 aa		3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	KY	Q8NBH2	561 aa		3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	SMARCC1	Q92922	1105 aa	Predicted RBP	3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	MKRN2	Q9H000	416 aa	Known RBP	3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	PRR13	Q9NZ81	148 aa		3.33	□□□□□ -1.88
PTCH1-223	ENST00000551623	NUDT5	Q9UKK9	219 aa		3.33	□□□□□ -1.88

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