RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 KCNQ5Q9NR82 932 aa16.35■□□□□ 0.21
CUX1-214ENST00000550008 PTPN22Q9Y2R2 807 aa16.35■□□□□ 0.21
CUX1-214ENST00000550008 GYPCP04921 128 aa16.35■□□□□ 0.21
CUX1-214ENST00000550008 CTNNA1P35221 906 aaKnown RBP16.35■□□□□ 0.21
CUX1-214ENST00000550008 MTMR1Q13613 665 aa16.35■□□□□ 0.21
CUX1-214ENST00000550008 NCAPHQ15003 741 aa16.35■□□□□ 0.21
CUX1-214ENST00000550008 LDHDQ86WU2 507 aa16.35■□□□□ 0.21
CUX1-214ENST00000550008 OTUD6BQ8N6M0 293 aa16.35■□□□□ 0.21
CUX1-214ENST00000550008 JRKLQ9Y4A0 524 aa16.35■□□□□ 0.21
CUX1-214ENST00000550008 PALM3A6NDB9 673 aaPredicted RBP16.35■□□□□ 0.21
CUX1-214ENST00000550008 TMOD1P28289 359 aa16.35■□□□□ 0.21
CUX1-214ENST00000550008 RASA3Q14644 834 aa16.35■□□□□ 0.21
CUX1-214ENST00000550008 ATP6V0A1Q93050 837 aa16.35■□□□□ 0.21
CUX1-214ENST00000550008 DCPSQ96C86 337 aaKnown RBP16.35■□□□□ 0.21
CUX1-214ENST00000550008 EIF2AK1Q9BQI3 630 aaKnown RBP16.35■□□□□ 0.21
CUX1-214ENST00000550008 TRIM6Q9C030 488 aaPredicted RBP16.35■□□□□ 0.21
CUX1-214ENST00000550008 INO80B-WBP1J3KQ70 363 aa16.34■□□□□ 0.21
CUX1-214ENST00000550008 PDE6CP51160 858 aa16.34■□□□□ 0.21
CUX1-214ENST00000550008 PADI6Q6TGC4 694 aa16.34■□□□□ 0.21
CUX1-214ENST00000550008 SLC7A3Q8WY07 619 aa16.34■□□□□ 0.21
CUX1-214ENST00000550008 INO80BQ9C086 356 aaPredicted RBP16.34■□□□□ 0.21
CUX1-214ENST00000550008 A0A087X0B3 334 aa16.34■□□□□ 0.21
CUX1-214ENST00000550008 CCDC151A5D8V7 595 aa16.34■□□□□ 0.21
CUX1-214ENST00000550008 SLC16A4O15374 487 aa16.34■□□□□ 0.21
CUX1-214ENST00000550008 SERPING1P05155 500 aa16.34■□□□□ 0.21
CUX1-214ENST00000550008 PRMT6Q96LA8 375 aaPredicted RBP16.34■□□□□ 0.21
CUX1-214ENST00000550008 PPANQ9NQ55 473 aaKnown RBP16.34■□□□□ 0.21
CUX1-214ENST00000550008 SPATA31A6Q5VVP1 1343 aa16.34■□□□□ 0.21
CUX1-214ENST00000550008 ATP2A1O14983 1001 aa16.34■□□□□ 0.21
CUX1-214ENST00000550008 FERP16591 822 aa16.34■□□□□ 0.21
CUX1-214ENST00000550008 PDXDC2PQ6P474 469 aa16.34■□□□□ 0.21
CUX1-214ENST00000550008 NFRKBQ6P4R8 1299 aa16.34■□□□□ 0.21
CUX1-214ENST00000550008 NT5C1BQ96P26 610 aa16.34■□□□□ 0.21
CUX1-214ENST00000550008 ACCSQ96QU6 501 aa16.34■□□□□ 0.21
CUX1-214ENST00000550008 PRR12Q9ULL5 1215 aa16.34■□□□□ 0.21
CUX1-214ENST00000550008 ATF7P17544 494 aaPredicted RBP16.33■□□□□ 0.21
CUX1-214ENST00000550008 ECE1P42892 770 aa16.33■□□□□ 0.21
CUX1-214ENST00000550008 NT5C2P49902 561 aa16.33■□□□□ 0.21
CUX1-214ENST00000550008 ZNF746Q6NUN9 644 aaPredicted RBP16.33■□□□□ 0.21
CUX1-214ENST00000550008 ACER1Q8TDN7 264 aa16.33■□□□□ 0.21
CUX1-214ENST00000550008 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.33■□□□□ 0.212e-7■□□□□ 10.7
CUX1-214ENST00000550008 NFAT5O94916 1531 aa16.33■□□□□ 0.21
CUX1-214ENST00000550008 KCNB1Q14721 858 aa16.33■□□□□ 0.2
CUX1-214ENST00000550008 ZSCAN26Q16670 478 aa16.33■□□□□ 0.2
CUX1-214ENST00000550008 KNOP1Q1ED39 458 aaKnown RBP16.33■□□□□ 0.2
CUX1-214ENST00000550008 KAZNQ674X7 775 aa16.33■□□□□ 0.2
CUX1-214ENST00000550008 FAM20AQ96MK3 541 aa16.33■□□□□ 0.2
CUX1-214ENST00000550008 ESYT3A0FGR9 886 aa16.33■□□□□ 0.2
CUX1-214ENST00000550008 PALMO75781 387 aa16.33■□□□□ 0.2
CUX1-214ENST00000550008 SNRNP48Q6IEG0 339 aaKnown RBP16.33■□□□□ 0.2
CUX1-214ENST00000550008 DEFB132Q7Z7B7 95 aa16.33■□□□□ 0.2
CUX1-214ENST00000550008 ZBTB33Q86T24 672 aa16.33■□□□□ 0.2
CUX1-214ENST00000550008 MGARPQ8TDB4 240 aa16.33■□□□□ 0.2
CUX1-214ENST00000550008 ZNF653Q96CK0 615 aa16.33■□□□□ 0.2
CUX1-214ENST00000550008 LXNQ9BS40 222 aa16.33■□□□□ 0.2
CUX1-214ENST00000550008 DNAI2Q9GZS0 605 aa16.33■□□□□ 0.2
CUX1-214ENST00000550008 LIMA1Q9UHB6 759 aaKnown RBP16.33■□□□□ 0.2
CUX1-214ENST00000550008 DDTLA6NHG4 134 aaPredicted RBP16.33■□□□□ 0.2
CUX1-214ENST00000550008 RHOBTB3O94955 611 aa16.33■□□□□ 0.2
CUX1-214ENST00000550008 ATP1A1P05023 1023 aaKnown RBP16.33■□□□□ 0.2
CUX1-214ENST00000550008 FAM204AQ9H8W3 233 aa16.33■□□□□ 0.2
CUX1-214ENST00000550008 NRXN3Q9Y4C0 1643 aa16.32■□□□□ 0.2
CUX1-214ENST00000550008 ACTN1P12814 892 aa16.32■□□□□ 0.2
CUX1-214ENST00000550008 PPFIA1Q13136 1202 aa16.32■□□□□ 0.2
CUX1-214ENST00000550008 RNF146Q9NTX7 359 aa16.32■□□□□ 0.2
CUX1-214ENST00000550008 DNAJC12Q9UKB3 198 aa16.32■□□□□ 0.2
CUX1-214ENST00000550008 PRELPP51888 382 aa16.32■□□□□ 0.2
CUX1-214ENST00000550008 SRGAP2CP0DJJ0 459 aa16.32■□□□□ 0.2
CUX1-214ENST00000550008 PIK3CAP42336 1068 aa16.32■□□□□ 0.2
CUX1-214ENST00000550008 SNX1Q13596 522 aa16.32■□□□□ 0.2
CUX1-214ENST00000550008 GPR162Q16538 588 aa16.32■□□□□ 0.2
CUX1-214ENST00000550008 HHIPL2Q6UWX4 724 aa16.32■□□□□ 0.2
CUX1-214ENST00000550008 MAGOHBQ96A72 148 aaKnown RBP16.32■□□□□ 0.2
CUX1-214ENST00000550008 PSMD14O00487 310 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 ZNF185O15231 689 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 CASP8Q14790 479 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 ZNF354CQ86Y25 554 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 MMS19Q96T76 1030 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 MAK16Q9BXY0 300 aaKnown RBP16.31■□□□□ 0.2
CUX1-214ENST00000550008 IQCGQ9H095 443 aaKnown RBP16.31■□□□□ 0.2
CUX1-214ENST00000550008 CYTH3O43739 400 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 CD58P19256 250 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 MNAT1P51948 309 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 GNGT1P63211 74 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 CEP55Q53EZ4 464 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 PPP1R14CQ8TAE6 165 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 SAAL1Q96ER3 474 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 DDX4Q9NQI0 724 aaKnown RBP16.31■□□□□ 0.2
CUX1-214ENST00000550008 SUGT1Q9Y2Z0 365 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 BZW2Q9Y6E2 419 aaKnown RBP16.31■□□□□ 0.2
CUX1-214ENST00000550008 TMEM191BP0C7N4 346 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 USP14P54578 494 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 HMGCS2P54868 508 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 TFAMQ00059 246 aaKnown RBP16.31■□□□□ 0.2
CUX1-214ENST00000550008 DDR1Q08345 913 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 ZNF394Q53GI3 561 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 CCDC91Q7Z6B0 441 aa16.31■□□□□ 0.2
CUX1-214ENST00000550008 PRPF38AQ8NAV1 312 aaKnown RBP16.31■□□□□ 0.2
CUX1-214ENST00000550008 GIMAP8Q8ND71 665 aaPredicted RBP16.31■□□□□ 0.2
CUX1-214ENST00000550008 FOXP2O15409 715 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms