RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 LPIN1Q14693 890 aa14.77□□□□□ -0.05
SCAF11-208ENST00000546534 PKN1Q16512 942 aa14.77□□□□□ -0.05
SCAF11-208ENST00000546534 UTP14CQ5TAP6 766 aaKnown RBP14.77□□□□□ -0.05
SCAF11-208ENST00000546534 METTL7BQ6UX53 244 aa14.77□□□□□ -0.05
SCAF11-208ENST00000546534 RUFY4Q6ZNE9 571 aa14.77□□□□□ -0.05
SCAF11-208ENST00000546534 FBXL6Q8N531 539 aa14.77□□□□□ -0.05
SCAF11-208ENST00000546534 SMRP1Q8NCR6 262 aa14.77□□□□□ -0.05
SCAF11-208ENST00000546534 PLVAPQ9BX97 442 aa14.77□□□□□ -0.05
SCAF11-208ENST00000546534 ZNF215Q9UL58 517 aaPredicted RBP14.77□□□□□ -0.05
SCAF11-208ENST00000546534 SPATA31C2B4DYI2 1134 aa14.76□□□□□ -0.05
SCAF11-208ENST00000546534 PPP1R37O75864 691 aa14.76□□□□□ -0.05
SCAF11-208ENST00000546534 ITGB1P05556 798 aa14.76□□□□□ -0.05
SCAF11-208ENST00000546534 ICAM3P32942 547 aa14.76□□□□□ -0.05
SCAF11-208ENST00000546534 MFAP1P55081 439 aaKnown RBP14.76□□□□□ -0.05
SCAF11-208ENST00000546534 MRPS9P82933 396 aaKnown RBP14.76□□□□□ -0.05
SCAF11-208ENST00000546534 MGAT3Q09327 533 aa14.76□□□□□ -0.05
SCAF11-208ENST00000546534 COASYQ13057 564 aa14.76□□□□□ -0.05
SCAF11-208ENST00000546534 CBX2Q14781 532 aaPredicted RBP14.76□□□□□ -0.05
SCAF11-208ENST00000546534 SLC35G1Q2M3R5 365 aa14.76□□□□□ -0.05
SCAF11-208ENST00000546534 GNPTABQ3T906 1256 aa14.76□□□□□ -0.05
SCAF11-208ENST00000546534 EFHBQ8N7U6 833 aa14.76□□□□□ -0.05
SCAF11-208ENST00000546534 SPPL3Q8TCT6 385 aa14.76□□□□□ -0.05
SCAF11-208ENST00000546534 P2RX5Q93086 422 aa14.76□□□□□ -0.05
SCAF11-208ENST00000546534 PPP2R3CQ969Q6 453 aa14.76□□□□□ -0.05
SCAF11-208ENST00000546534 INPP4AQ96PE3 977 aaPredicted RBP14.76□□□□□ -0.05
SCAF11-208ENST00000546534 FAM86C1Q9NVL1 165 aa14.76□□□□□ -0.05
SCAF11-208ENST00000546534 RTEL1Q9NZ71 1219 aa14.76□□□□□ -0.05
SCAF11-208ENST00000546534 MAD2L2Q9UI95 211 aa14.76□□□□□ -0.05
SCAF11-208ENST00000546534 MRPL42Q9Y6G3 142 aaKnown RBP14.76□□□□□ -0.05
SCAF11-208ENST00000546534 MYH6P13533 1939 aa14.76□□□□□ -0.05
SCAF11-208ENST00000546534 NRCAMQ92823 1304 aa14.75□□□□□ -0.05
SCAF11-208ENST00000546534 GFRA3O60609 400 aa14.75□□□□□ -0.05
SCAF11-208ENST00000546534 NRIP1P48552 1158 aa14.75□□□□□ -0.05
SCAF11-208ENST00000546534 SP4Q02446 784 aa14.75□□□□□ -0.05
SCAF11-208ENST00000546534 FBXO47Q5MNV8 452 aa14.75□□□□□ -0.05
SCAF11-208ENST00000546534 RBM23Q86U06 439 aaKnown RBP14.75□□□□□ -0.05
SCAF11-208ENST00000546534 HOMER1Q86YM7 354 aa14.75□□□□□ -0.05
SCAF11-208ENST00000546534 PDCD7Q8N8D1 485 aaKnown RBP14.75□□□□□ -0.05
SCAF11-208ENST00000546534 RILPL2Q969X0 211 aa14.75□□□□□ -0.05
SCAF11-208ENST00000546534 METRNQ9UJH8 293 aa14.75□□□□□ -0.05
SCAF11-208ENST00000546534 USP15Q9Y4E8 981 aaPredicted RBP14.75□□□□□ -0.05
SCAF11-208ENST00000546534 C5orf42Q9H799 3197 aa14.75□□□□□ -0.05
SCAF11-208ENST00000546534 TRIOO75962 3097 aa14.74□□□□□ -0.05
SCAF11-208ENST00000546534 FIBPO43427 364 aa14.74□□□□□ -0.05
SCAF11-208ENST00000546534 GLP2RO95838 553 aa14.74□□□□□ -0.05
SCAF11-208ENST00000546534 SDSP20132 328 aa14.74□□□□□ -0.05
SCAF11-208ENST00000546534 VCPP55072 806 aaKnown RBP14.74□□□□□ -0.05
SCAF11-208ENST00000546534 SIGLEC14Q08ET2 396 aa14.74□□□□□ -0.05
SCAF11-208ENST00000546534 NAALADL2Q58DX5 795 aa14.74□□□□□ -0.05
SCAF11-208ENST00000546534 IFIT1BQ5T764 474 aaKnown RBP14.74□□□□□ -0.05
SCAF11-208ENST00000546534 TAF2Q6P1X5 1199 aa14.74□□□□□ -0.05
SCAF11-208ENST00000546534 RTN4RL1Q86UN2 441 aaPredicted RBP14.74□□□□□ -0.05
SCAF11-208ENST00000546534 KLHL23Q8NBE8 558 aa14.74□□□□□ -0.05
SCAF11-208ENST00000546534 LINC01599Q8WXQ3 324 aa14.74□□□□□ -0.05
SCAF11-208ENST00000546534 PIGSQ96S52 555 aa14.74□□□□□ -0.05
SCAF11-208ENST00000546534 UBAC1Q9BSL1 405 aa14.74□□□□□ -0.05
SCAF11-208ENST00000546534 BARX2Q9UMQ3 279 aaPredicted RBP14.74□□□□□ -0.05
SCAF11-208ENST00000546534 ZDBF2Q9HCK1 2354 aa14.74□□□□□ -0.05
SCAF11-208ENST00000546534 FRMPD4Q14CM0 1322 aa14.73□□□□□ -0.05
SCAF11-208ENST00000546534 PALM3A6NDB9 673 aaPredicted RBP14.73□□□□□ -0.05
SCAF11-208ENST00000546534 STAM2O75886 525 aa14.73□□□□□ -0.05
SCAF11-208ENST00000546534 TSHZ1Q6ZSZ6 1077 aa14.73□□□□□ -0.05
SCAF11-208ENST00000546534 RSPH3Q86UC2 560 aa14.73□□□□□ -0.05
SCAF11-208ENST00000546534 CMTR2Q8IYT2 770 aaKnown RBP14.73□□□□□ -0.05
SCAF11-208ENST00000546534 CRIPAKQ8N1N5 446 aa14.73□□□□□ -0.05
SCAF11-208ENST00000546534 POF1BQ8WVV4 589 aa14.73□□□□□ -0.05
SCAF11-208ENST00000546534 DNAJB3Q8WWF6 145 aa14.73□□□□□ -0.05
SCAF11-208ENST00000546534 ASIC4Q96FT7 647 aa14.73□□□□□ -0.05
SCAF11-208ENST00000546534 RPGRIP1Q96KN7 1286 aa14.73□□□□□ -0.05
SCAF11-208ENST00000546534 PHF7Q9BWX1 381 aaPredicted RBP14.73□□□□□ -0.05
SCAF11-208ENST00000546534 AGO3Q9H9G7 860 aaKnown RBP14.73□□□□□ -0.05
SCAF11-208ENST00000546534 PCDHGC5Q9Y5F6 944 aa14.73□□□□□ -0.05
SCAF11-208ENST00000546534 CDY2AQ9Y6F7 541 aa14.73□□□□□ -0.05
SCAF11-208ENST00000546534 AVPR2P30518 371 aa14.72□□□□□ -0.05
SCAF11-208ENST00000546534 CD52P31358 61 aa14.72□□□□□ -0.05
SCAF11-208ENST00000546534 TRAF1Q13077 416 aa14.72□□□□□ -0.05
SCAF11-208ENST00000546534 PPFIA1Q13136 1202 aa14.72□□□□□ -0.05
SCAF11-208ENST00000546534 SEC23AQ15436 765 aa14.72□□□□□ -0.05
SCAF11-208ENST00000546534 PAN2Q504Q3 1202 aaKnown RBP14.72□□□□□ -0.05
SCAF11-208ENST00000546534 SENP7Q9BQF6 1050 aa14.72□□□□□ -0.05
SCAF11-208ENST00000546534 KRT23Q9C075 422 aa14.72□□□□□ -0.05
SCAF11-208ENST00000546534 RIOX1Q9H6W3 641 aa14.72□□□□□ -0.05
SCAF11-208ENST00000546534 TUBE1Q9UJT0 475 aa14.72□□□□□ -0.05
SCAF11-208ENST00000546534 TTC3P53804 2025 aa14.71□□□□□ -0.05
SCAF11-208ENST00000546534 ZFHX2Q9C0A1 2572 aaPredicted RBP14.71□□□□□ -0.05
SCAF11-208ENST00000546534 MBLAC1A4D2B0 266 aaPredicted RBP14.71□□□□□ -0.05
SCAF11-208ENST00000546534 SEC24BO95487 1268 aa14.71□□□□□ -0.05
SCAF11-208ENST00000546534 TCF7P36402 384 aaPredicted RBP14.71□□□□□ -0.05
SCAF11-208ENST00000546534 MRPS6P82932 125 aaKnown RBP14.71□□□□□ -0.05
SCAF11-208ENST00000546534 RBM10P98175 930 aaKnown RBP14.71□□□□□ -0.05
SCAF11-208ENST00000546534 GRIK4Q16099 956 aa14.71□□□□□ -0.05
SCAF11-208ENST00000546534 IMMTQ16891 758 aaKnown RBP14.71□□□□□ -0.05
SCAF11-208ENST00000546534 MARCH8Q5T0T0 291 aa14.71□□□□□ -0.05
SCAF11-208ENST00000546534 CWC27Q6UX04 472 aaKnown RBP14.71□□□□□ -0.05
SCAF11-208ENST00000546534 NPAS4Q8IUM7 802 aa14.71□□□□□ -0.05
SCAF11-208ENST00000546534 ATOH1Q92858 354 aaPredicted RBP14.71□□□□□ -0.05
SCAF11-208ENST00000546534 CNNM2Q9H8M5 875 aa14.71□□□□□ -0.05
SCAF11-208ENST00000546534 KMT2EQ8IZD2 1858 aa14.71□□□□□ -0.05
SCAF11-208ENST00000546534 LAMA4Q16363 1823 aa14.71□□□□□ -0.06
SCAF11-208ENST00000546534 PNMA6FA0A0J9YX94 578 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms