RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 MAATS1Q7Z4T9 603 aa16.52■□□□□ 0.24
USP28-214ENST00000545540 TRIM59Q8IWR1 403 aa16.52■□□□□ 0.24
USP28-214ENST00000545540 DDX47Q9H0S4 455 aaKnown RBP16.52■□□□□ 0.24
USP28-214ENST00000545540 CEP72Q9P209 647 aa16.52■□□□□ 0.24
USP28-214ENST00000545540 SCAF8Q9UPN6 1271 aaKnown RBP16.52■□□□□ 0.24
USP28-214ENST00000545540 HSF2BPO75031 334 aa16.52■□□□□ 0.23
USP28-214ENST00000545540 AKAP3O75969 853 aa16.52■□□□□ 0.23
USP28-214ENST00000545540 ABCB4P21439 1286 aa16.52■□□□□ 0.23
USP28-214ENST00000545540 COG2Q14746 738 aa16.52■□□□□ 0.23
USP28-214ENST00000545540 PACS2Q86VP3 889 aa16.52■□□□□ 0.23
USP28-214ENST00000545540 ESYT2A0FGR8 921 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 GCNT3O95395 438 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 ITGA4P13612 1032 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 HOXD13P35453 343 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 SEC24CP53992 1094 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 NNTQ13423 1086 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 ZYXQ15942 572 aaKnown RBP16.51■□□□□ 0.23
USP28-214ENST00000545540 ZNF662Q6ZS27 426 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 MICALL1Q8N3F8 863 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 RBM46Q8TBY0 533 aaKnown RBP16.51■□□□□ 0.23
USP28-214ENST00000545540 ELMO3Q96BJ8 720 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 KCTD10Q9H3F6 313 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 SEPT11Q9NVA2 429 aaKnown RBP16.51■□□□□ 0.23
USP28-214ENST00000545540 PCDHA2Q9Y5H9 948 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 UBAP1LF5GYI3 381 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 LRRN2O75325 713 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 MSL1Q68DK7 614 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 ZNF233A6NK53 670 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 JAG1P78504 1218 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 SLC18A3Q16572 532 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 SLFN13Q68D06 897 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 SMCHD1A6NHR9 2005 aa16.51■□□□□ 0.23
USP28-214ENST00000545540 CETN3O15182 167 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 PPFIA4O75335 1185 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 GFPT2O94808 682 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 NMT1P30419 496 aaKnown RBP16.5■□□□□ 0.23
USP28-214ENST00000545540 PRPF4BQ13523 1007 aaKnown RBP16.5■□□□□ 0.23
USP28-214ENST00000545540 PPP4R3AQ6IN85 833 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 RUSC1Q9BVN2 902 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 CELF4Q9BZC1 486 aaKnown RBP16.5■□□□□ 0.23
USP28-214ENST00000545540 DHX36Q9H2U1 1008 aaKnown RBP16.5■□□□□ 0.23
USP28-214ENST00000545540 GAKO14976 1311 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 CLK2P49760 499 aaKnown RBP16.5■□□□□ 0.23
USP28-214ENST00000545540 ARHGAP4P98171 946 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 NAB2Q15742 525 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 CFAP58Q5T655 872 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 LRRC4CQ9HCJ2 640 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 EML1O00423 815 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 LCA5LO95447 670 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 SNHG28P0DPA3 235 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 UCHL3P15374 230 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 ZNF76P36508 570 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 FLT3P36888 993 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 EPHB4P54760 987 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 APOBEC3HQ6NTF7 200 aaKnown RBP16.5■□□□□ 0.23
USP28-214ENST00000545540 TPH2Q8IWU9 490 aa16.5■□□□□ 0.23
USP28-214ENST00000545540 ARMCX3Q9UH62 379 aaPredicted RBP16.5■□□□□ 0.23
USP28-214ENST00000545540 MEIS2O14770 477 aa16.49■□□□□ 0.23
USP28-214ENST00000545540 PPP1R2P41236 205 aa16.49■□□□□ 0.23
USP28-214ENST00000545540 CHADLQ6NUI6 762 aa16.49■□□□□ 0.23
USP28-214ENST00000545540 ZNF622Q969S3 477 aaKnown RBP eCLIP16.49■□□□□ 0.236e-7■■■■■ 27
USP28-214ENST00000545540 PPEF1O14829 653 aaPredicted RBP16.49■□□□□ 0.23
USP28-214ENST00000545540 GIT2Q14161 759 aa16.49■□□□□ 0.23
USP28-214ENST00000545540 SLF2Q8IX21 1173 aa16.49■□□□□ 0.23
USP28-214ENST00000545540 U2AF1L4Q8WU68 220 aaKnown RBP16.49■□□□□ 0.23
USP28-214ENST00000545540 RNPC3Q96LT9 517 aaKnown RBP16.49■□□□□ 0.23
USP28-214ENST00000545540 DPH5Q9H2P9 285 aa16.49■□□□□ 0.23
USP28-214ENST00000545540 OSGEPQ9NPF4 335 aa16.49■□□□□ 0.23
USP28-214ENST00000545540 MYH7BA7E2Y1 1941 aa16.49■□□□□ 0.23
USP28-214ENST00000545540 SLC12A3P55017 1021 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 EXOC3L4Q17RC7 722 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 CEP85LQ5SZL2 805 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 ALKBH5Q6P6C2 394 aaKnown RBP16.48■□□□□ 0.23
USP28-214ENST00000545540 AMACRQ9UHK6 382 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 NAV1Q8NEY1 1877 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 DDX39AO00148 427 aaKnown RBP16.48■□□□□ 0.23
USP28-214ENST00000545540 SPATA31C1P0DKV0 1188 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 NEUROG2Q9H2A3 272 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 GANQ9H2C0 597 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 NR2E1Q9Y466 385 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 IGKV6D-41A0A0C4DH26 115 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 PJA2O43164 708 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 TRIM49P0CI25 452 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 TRIM49CP0CI26 452 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 PON1P27169 355 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 CYP2J2P51589 502 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 PSMD2Q13200 908 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 RPS6KA1Q15418 735 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 VPS72Q15906 364 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 CERKLQ49MI3 558 aaPredicted RBP16.48■□□□□ 0.23
USP28-214ENST00000545540 IRF2BP2Q7Z5L9 587 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 IFT20Q8IY31 132 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 TAF4BQ92750 862 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 DNM3Q9UQ16 869 aa16.48■□□□□ 0.23
USP28-214ENST00000545540 SSU72P8A0A1W2PR75 194 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 CFBP00751 764 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 PDE4CQ08493 712 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 ARHGAP44Q17R89 818 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 CRY2Q49AN0 593 aa16.47■□□□□ 0.23
USP28-214ENST00000545540 TBC1D22AQ8WUA7 517 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms