RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 PGRMC1O00264 195 aaKnown RBP6.3□□□□□ -1.4
VPS50-220ENST00000544910 GFPT2O94808 682 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 H2AFXP16104 143 aaPredicted RBP6.3□□□□□ -1.4
VPS50-220ENST00000544910 SLC8A1P32418 973 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 PRELPP51888 382 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 SLC7A5Q01650 507 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 DMP1Q13316 513 aaPredicted RBP6.3□□□□□ -1.4
VPS50-220ENST00000544910 SH2D4BQ5SQS7 431 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 RPAINQ86UA6 219 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 RNF168Q8IYW5 571 aaPredicted RBP6.3□□□□□ -1.4
VPS50-220ENST00000544910 HPS3Q969F9 1004 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 FAM114A2Q9NRY5 505 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 PNMA2Q9UL42 364 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 AFF2P51816 1311 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 NPHP3-ACAD11A0A0J9YXS1 232 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 TLDC2A0PJX2 215 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 CLRN2A0PK11 232 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 E7EVH7 732 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 ALAS1P13196 640 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 FAM160B2Q86V87 743 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 GJD4Q96KN9 370 aaPredicted RBP6.3□□□□□ -1.4
VPS50-220ENST00000544910 FAM20AQ96MK3 541 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 RUNDC3BQ96NL0 473 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 RABEP2Q9H5N1 569 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 AS3MTQ9HBK9 375 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 ST7Q9NRC1 585 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 TRIM10Q9UDY6 481 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 POTEFA5A3E0 1075 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 NEBLO76041 1014 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 NR3C1P04150 777 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 POTEIP0CG38 1075 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 CACNB3P54284 484 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 ARHGAP4P98171 946 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 ALCAMQ13740 583 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 KNOP1Q1ED39 458 aaKnown RBP6.3□□□□□ -1.4
VPS50-220ENST00000544910 XKR9Q5GH70 373 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 NFRKBQ6P4R8 1299 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 POTEGQ6S5H5 508 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 POTEEQ6S8J3 1075 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 TAOK1Q7L7X3 1001 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 SH3RF1Q7Z6J0 888 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 RNF10Q8N5U6 811 aaKnown RBP6.3□□□□□ -1.4
VPS50-220ENST00000544910 HOOK2Q96ED9 719 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 MXD3Q9BW11 206 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 SIPA1L3O60292 1781 aaPredicted RBP6.3□□□□□ -1.4
VPS50-220ENST00000544910 SLC16A3O15427 465 aaKnown RBP6.3□□□□□ -1.4
VPS50-220ENST00000544910 NCK2O43639 380 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 PPFIA4O75335 1185 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 GYS2P54840 703 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 MFAP3P55082 362 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 STK4Q13043 487 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 TTLL12Q14166 644 aaPredicted RBP6.3□□□□□ -1.4
VPS50-220ENST00000544910 FAM83BQ5T0W9 1011 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 TTBK2Q6IQ55 1244 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 EMBQ6PCB8 327 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 CCDC105Q8IYK2 499 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 WHAMMQ8TF30 809 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 FAM212AQ96EL1 285 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 EDEM3Q9BZQ6 932 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 IL17RBQ9NRM6 502 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 AGPAT5Q9NUQ2 364 aa6.3□□□□□ -1.4
VPS50-220ENST00000544910 TYW1Q9NV66 732 aaKnown RBP6.3□□□□□ -1.4
VPS50-220ENST00000544910 TESPA1A2RU30 521 aaPredicted RBP6.29□□□□□ -1.4
VPS50-220ENST00000544910 ATP2A1O14983 1001 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 KCNH2Q12809 1159 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 GRB10Q13322 594 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 E2F4Q16254 413 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 PODNQ7Z5L7 613 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 FRMD5Q7Z6J6 570 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 GSPT2Q8IYD1 628 aaKnown RBP6.29□□□□□ -1.4
VPS50-220ENST00000544910 SMC6Q96SB8 1091 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 MMS19Q96T76 1030 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 DPH5Q9H2P9 285 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 JMJD4Q9H9V9 463 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 DIS3Q9Y2L1 958 aaKnown RBP6.29□□□□□ -1.4
VPS50-220ENST00000544910 GH2P01242 217 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 PCK1P35558 622 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 GGCXP38435 758 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 VSNL1P62760 191 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 RBBP5Q15291 538 aaKnown RBP6.29□□□□□ -1.4
VPS50-220ENST00000544910 CCDC93Q567U6 631 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 TRIM65Q6PJ69 517 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 NSMFQ6X4W1 530 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 MSANTD4Q8NCY6 345 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.29□□□□□ -1.4
VPS50-220ENST00000544910 ANKS1AQ92625 1134 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 BHMT2Q9H2M3 363 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 LARSQ9P2J5 1176 aaKnown RBP6.29□□□□□ -1.4
VPS50-220ENST00000544910 KCNG1Q9UIX4 513 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 SPATA31A6Q5VVP1 1343 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 FAM170AA1A519 330 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 CCDC160A6NGH7 325 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 ALDH3A1P30838 453 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 ATP1A2P50993 1020 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 CUL1Q13616 776 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 TNFAIP1Q13829 316 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 GRIPAP1Q4V328 841 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 CDC42EP5Q6NZY7 148 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 HHIPL2Q6UWX4 724 aa6.29□□□□□ -1.4
VPS50-220ENST00000544910 GRK7Q8WTQ7 553 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms