RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PLPPR4Q7Z2D5 763 aa19.24■□□□□ 0.67
LIG1-204ENST00000542460 CCDC60Q8IWA6 550 aaPredicted RBP19.24■□□□□ 0.67
LIG1-204ENST00000542460 AFAP1L1Q8TED9 768 aa19.24■□□□□ 0.67
LIG1-204ENST00000542460 LEO1Q8WVC0 666 aaPredicted RBP19.24■□□□□ 0.67
LIG1-204ENST00000542460 AK8Q96MA6 479 aa19.24■□□□□ 0.67
LIG1-204ENST00000542460 PCYT2Q99447 389 aa19.24■□□□□ 0.67
LIG1-204ENST00000542460 ZNF302Q9NR11 478 aa19.24■□□□□ 0.67
LIG1-204ENST00000542460 ZNF215Q9UL58 517 aaPredicted RBP19.24■□□□□ 0.67
LIG1-204ENST00000542460 H3BRB1 525 aa19.23■□□□□ 0.67
LIG1-204ENST00000542460 F2P00734 622 aa19.23■□□□□ 0.67
LIG1-204ENST00000542460 P4HBP07237 508 aaKnown RBP19.23■□□□□ 0.67
LIG1-204ENST00000542460 MNX1P50219 401 aaPredicted RBP19.23■□□□□ 0.67
LIG1-204ENST00000542460 SLC26A2P50443 739 aa19.23■□□□□ 0.67
LIG1-204ENST00000542460 KAT2BQ92831 832 aa19.23■□□□□ 0.67
LIG1-204ENST00000542460 ATP6V0A1Q93050 837 aa19.23■□□□□ 0.67
LIG1-204ENST00000542460 GLT1D1Q96MS3 346 aa19.23■□□□□ 0.67
LIG1-204ENST00000542460 HSD17B14Q9BPX1 270 aa19.23■□□□□ 0.67
LIG1-204ENST00000542460 EIF2AK1Q9BQI3 630 aaKnown RBP19.23■□□□□ 0.67
LIG1-204ENST00000542460 KATNAL1Q9BW62 490 aa19.23■□□□□ 0.67
LIG1-204ENST00000542460 TUT1Q9H6E5 874 aaKnown RBP19.23■□□□□ 0.67
LIG1-204ENST00000542460 ERAP1Q9NZ08 941 aa19.23■□□□□ 0.67
LIG1-204ENST00000542460 GABBR1Q9UBS5 961 aa19.23■□□□□ 0.67
LIG1-204ENST00000542460 MAFBQ9Y5Q3 323 aaPredicted RBP19.23■□□□□ 0.67
LIG1-204ENST00000542460 MKI67P46013 3256 aaKnown RBP19.22■□□□□ 0.67
LIG1-204ENST00000542460 A0A1W2PQ45 241 aaPredicted RBP19.22■□□□□ 0.67
LIG1-204ENST00000542460 A0A1W2PQY0 241 aa19.22■□□□□ 0.67
LIG1-204ENST00000542460 EN2P19622 333 aaPredicted RBP19.22■□□□□ 0.67
LIG1-204ENST00000542460 ME1P48163 572 aa19.22■□□□□ 0.67
LIG1-204ENST00000542460 GRIN1Q05586 938 aa19.22■□□□□ 0.67
LIG1-204ENST00000542460 HAUS3Q68CZ6 603 aa19.22■□□□□ 0.67
LIG1-204ENST00000542460 TRIM50Q86XT4 487 aa19.22■□□□□ 0.67
LIG1-204ENST00000542460 NEK9Q8TD19 979 aa19.22■□□□□ 0.67
LIG1-204ENST00000542460 CLIC6Q96NY7 704 aa19.22■□□□□ 0.67
LIG1-204ENST00000542460 DOCK5Q9H7D0 1870 aa19.22■□□□□ 0.67
LIG1-204ENST00000542460 DKC1O60832 514 aaKnown RBP eCLIP19.21■□□□□ 0.671e-6■■□□□ 12.5
LIG1-204ENST00000542460 SLITRK3O94933 977 aa19.21■□□□□ 0.67
LIG1-204ENST00000542460 QARSP47897 775 aaKnown RBP19.21■□□□□ 0.67
LIG1-204ENST00000542460 PSMC5P62195 406 aa19.21■□□□□ 0.67
LIG1-204ENST00000542460 KRT79Q5XKE5 535 aa19.21■□□□□ 0.67
LIG1-204ENST00000542460 PDXDC2PQ6P474 469 aa19.21■□□□□ 0.67
LIG1-204ENST00000542460 BANK1Q8NDB2 785 aa19.21■□□□□ 0.67
LIG1-204ENST00000542460 VTI1AQ96AJ9 217 aa19.21■□□□□ 0.67
LIG1-204ENST00000542460 DYDC2Q96IM9 177 aa19.21■□□□□ 0.67
LIG1-204ENST00000542460 POLR3CQ9BUI4 534 aaPredicted RBP19.21■□□□□ 0.67
LIG1-204ENST00000542460 CSRNP2Q9H175 543 aa19.21■□□□□ 0.67
LIG1-204ENST00000542460 RGL1Q9NZL6 768 aa19.21■□□□□ 0.67
LIG1-204ENST00000542460 FRMPD3Q5JV73 1810 aa19.21■□□□□ 0.67
LIG1-204ENST00000542460 MYH15Q9Y2K3 1946 aa19.21■□□□□ 0.67
LIG1-204ENST00000542460 PDE4DIPQ5VU43 2346 aa19.21■□□□□ 0.67
LIG1-204ENST00000542460 HAS3O00219 553 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 CUTAO60888 179 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 CDC25AP30304 524 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 PSEN2P49810 448 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 CYP4A11Q02928 519 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 MFSD10Q14728 455 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 KIAA0753Q2KHM9 967 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 ZNF579Q8NAF0 562 aaKnown RBP19.2■□□□□ 0.66
LIG1-204ENST00000542460 ZSWIM4Q9H7M6 989 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 TUFT1Q9NNX1 390 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 STARD7Q9NQZ5 370 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 PCDHA7Q9UN72 937 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 IGSF9BQ9UPX0 1349 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 PP2D1A8MPX8 630 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 COL6A1P12109 1028 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 RPA1P27694 616 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 UBA7P41226 1012 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 CTTNQ14247 550 aaKnown RBP19.2■□□□□ 0.66
LIG1-204ENST00000542460 UGCGQ16739 394 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 NECAB2Q7Z6G3 386 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 CATSPER3Q86XQ3 398 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 TPH2Q8IWU9 490 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 SNX29Q8TEQ0 813 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 DIS3LQ8TF46 1054 aaKnown RBP19.2■□□□□ 0.66
LIG1-204ENST00000542460 PAWRQ96IZ0 340 aaKnown RBP19.2■□□□□ 0.66
LIG1-204ENST00000542460 LXNQ9BS40 222 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 SENP6Q9GZR1 1112 aaPredicted RBP19.2■□□□□ 0.66
LIG1-204ENST00000542460 GDPD2Q9HCC8 539 aa19.2■□□□□ 0.66
LIG1-204ENST00000542460 KIAA0100Q14667 2235 aaKnown RBP19.19■□□□□ 0.66
LIG1-204ENST00000542460 SPATA31C1P0DKV0 1188 aa19.19■□□□□ 0.66
LIG1-204ENST00000542460 ATP4AP20648 1035 aa19.19■□□□□ 0.66
LIG1-204ENST00000542460 MUTP22033 750 aa19.19■□□□□ 0.66
LIG1-204ENST00000542460 MARK3P27448 753 aa19.19■□□□□ 0.66
LIG1-204ENST00000542460 CCT6AP40227 531 aaKnown RBP19.19■□□□□ 0.66
LIG1-204ENST00000542460 CHMP4BP1P59074 171 aa19.19■□□□□ 0.66
LIG1-204ENST00000542460 PSMC6P62333 389 aa19.19■□□□□ 0.66
LIG1-204ENST00000542460 AXDND1Q5T1B0 1012 aaPredicted RBP19.19■□□□□ 0.66
LIG1-204ENST00000542460 C4orf19Q8IY42 314 aa19.19■□□□□ 0.66
LIG1-204ENST00000542460 CKAP2LQ8IYA6 745 aa19.19■□□□□ 0.66
LIG1-204ENST00000542460 RNPEPQ9H4A4 650 aa19.19■□□□□ 0.66
LIG1-204ENST00000542460 C11orf49Q9H6J7 331 aa19.19■□□□□ 0.66
LIG1-204ENST00000542460 POTEB3A0JP26 581 aa19.18■□□□□ 0.66
LIG1-204ENST00000542460 SLC26A4O43511 780 aa19.18■□□□□ 0.66
LIG1-204ENST00000542460 ZNF862O60290 1169 aa19.18■□□□□ 0.66
LIG1-204ENST00000542460 MED24O75448 989 aa19.18■□□□□ 0.66
LIG1-204ENST00000542460 LYPLA2O95372 231 aa19.18■□□□□ 0.66
LIG1-204ENST00000542460 PLCB4Q15147 1175 aa19.18■□□□□ 0.66
LIG1-204ENST00000542460 CSPP1Q1MSJ5 1256 aa19.18■□□□□ 0.66
LIG1-204ENST00000542460 NBPF20Q3BBV1 942 aa19.18■□□□□ 0.66
LIG1-204ENST00000542460 SPECC1Q5M775 1068 aa19.18■□□□□ 0.66
LIG1-204ENST00000542460 POTEBQ6S5H4 581 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms