RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 H7C0C1 242 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 TCP1P17987 556 aaKnown RBP15.32■□□□□ 0.04
USP3-204ENST00000540797 ELF1P32519 619 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 ATP5OP48047 213 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 COG2Q14746 738 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 SWSAP1Q6NVH7 229 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 DDX41Q9UJV9 622 aaKnown RBP15.32■□□□□ 0.04
USP3-204ENST00000540797 DIP2BQ9P265 1576 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 U2AF2P26368 475 aaKnown RBP eCLIP15.32■□□□□ 0.042e-7■■■□□ 16.9
USP3-204ENST00000540797 MAN1A1P33908 653 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 PPP1R2P3Q6NXS1 205 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 SCARA5Q6ZMJ2 495 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 LRRC8AQ8IWT6 810 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 NEK9Q8TD19 979 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 ZNF148Q9UQR1 794 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 EBAG9O00559 213 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 GFPT2O94808 682 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 ANXA13P27216 316 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 GIMAP7Q8NHV1 300 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 ENOX1Q8TC92 643 aaKnown RBP15.32■□□□□ 0.04
USP3-204ENST00000540797 SPATA33Q96N06 139 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 PFDN4Q9NQP4 134 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 GABBR1Q9UBS5 961 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 SLC12A6Q9UHW9 1150 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 MAPK4P31152 587 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 TAF1CQ15572 869 aaPredicted RBP15.32■□□□□ 0.04
USP3-204ENST00000540797 DENND2CQ68D51 928 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 ARMCX2Q7L311 632 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 MICAL1Q8TDZ2 1067 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 HEXIM2Q96MH2 286 aaKnown RBP15.32■□□□□ 0.04
USP3-204ENST00000540797 SLC38A10Q9HBR0 1119 aa15.32■□□□□ 0.04
USP3-204ENST00000540797 P4HBP07237 508 aaKnown RBP15.31■□□□□ 0.04
USP3-204ENST00000540797 ELF2Q15723 593 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 INTS8Q75QN2 995 aaKnown RBP15.31■□□□□ 0.04
USP3-204ENST00000540797 CLDN3O15551 220 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 GMNNO75496 209 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 ZNF157P51786 506 aaPredicted RBP15.31■□□□□ 0.04
USP3-204ENST00000540797 RESP18Q5W5W9 173 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 UNC13DQ70J99 1090 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 RFX6Q8HWS3 928 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 SIX6OS1Q8N1H7 587 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 PSPC1Q8WXF1 523 aaKnown RBP15.31■□□□□ 0.04
USP3-204ENST00000540797 MTMR4Q9NYA4 1195 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 QARSP47897 775 aaKnown RBP15.31■□□□□ 0.04
USP3-204ENST00000540797 RBL2Q08999 1139 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 TWF2Q6IBS0 349 aaKnown RBP15.31■□□□□ 0.04
USP3-204ENST00000540797 VPS52Q8N1B4 723 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 STAG2Q8N3U4 1231 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 P3H4Q92791 437 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 SAMSN1Q9NSI8 373 aaKnown RBP15.31■□□□□ 0.04
USP3-204ENST00000540797 ANAPC4Q9UJX5 808 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 PHLPP2Q6ZVD8 1323 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 C19orf81C9J6K1 198 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 IPO5O00410 1097 aaKnown RBP15.31■□□□□ 0.04
USP3-204ENST00000540797 EHHADHQ08426 723 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 INTS5Q6P9B9 1019 aaKnown RBP15.31■□□□□ 0.04
USP3-204ENST00000540797 POTEDQ86YR6 584 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 BBS5Q8N3I7 341 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 FAM133AQ8N9E0 248 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 FAM151AQ8WW52 585 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 MTRQ99707 1265 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 TOPORSQ9NS56 1045 aaPredicted RBP15.31■□□□□ 0.04
USP3-204ENST00000540797 AFG3L2Q9Y4W6 797 aa15.31■□□□□ 0.04
USP3-204ENST00000540797 E9PMD0 336 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 TNFAIP2Q03169 654 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 ORC2Q13416 577 aaPredicted RBP15.3■□□□□ 0.04
USP3-204ENST00000540797 OR6B2Q6IFH4 312 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 SGMS1Q86VZ5 419 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 ZNF280CQ8ND82 737 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 ATP2A3Q93084 1043 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 TAB3Q8N5C8 712 aaPredicted RBP15.3■□□□□ 0.04
USP3-204ENST00000540797 LPAR1Q92633 364 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 ZNF512BQ96KM6 892 aaPredicted RBP15.3■□□□□ 0.04
USP3-204ENST00000540797 MYOZ2Q9NPC6 264 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 INPP5FQ9Y2H2 1132 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 WDR46O15213 610 aaKnown RBP15.3■□□□□ 0.04
USP3-204ENST00000540797 RPS12P25398 132 aaKnown RBP15.3■□□□□ 0.04
USP3-204ENST00000540797 SNAPC2Q13487 334 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 SBK1Q52WX2 424 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 DNAJC24Q6P3W2 148 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 FBXO33Q7Z6M2 555 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 SFR1Q86XK3 245 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 DENND3A2RUS2 1198 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 TTBK2Q6IQ55 1244 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 RAET1EQ8TD07 263 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 RAD54LQ92698 747 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 PLCB1Q9NQ66 1216 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 COL23A1Q86Y22 540 aaPredicted RBP15.3■□□□□ 0.04
USP3-204ENST00000540797 AFAP1L1Q8TED9 768 aa15.3■□□□□ 0.04
USP3-204ENST00000540797 PHBP35232 272 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 CUL4BQ13620 913 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 PDIA6Q15084 440 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 ELMSAN1Q6PJG2 1045 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 OR6B3Q8NGW1 331 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 POTEB3A0JP26 581 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 POTECB2RU33 542 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 PRAMEF18Q5VWM3 479 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 POTEBQ6S5H4 581 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 C4orf50Q6ZRC1 276 aa15.29■□□□□ 0.04
USP3-204ENST00000540797 NDST4Q9H3R1 872 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms