RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 ESYT3A0FGR9 886 aa4.25□□□□□ -1.73
SKA3-207ENST00000536239 RAMP2O60895 175 aa4.25□□□□□ -1.73
SKA3-207ENST00000536239 RRADP55042 308 aa4.25□□□□□ -1.73
SKA3-207ENST00000536239 ULK2Q8IYT8 1036 aa4.25□□□□□ -1.73
SKA3-207ENST00000536239 UHMK1Q8TAS1 419 aaKnown RBP4.25□□□□□ -1.73
SKA3-207ENST00000536239 CLIP3Q96DZ5 547 aa4.25□□□□□ -1.73
SKA3-207ENST00000536239 SCYL1Q96KG9 808 aa4.25□□□□□ -1.73
SKA3-207ENST00000536239 PRRX2Q99811 253 aa4.25□□□□□ -1.73
SKA3-207ENST00000536239 GZF1Q9H116 711 aaPredicted RBP4.25□□□□□ -1.73
SKA3-207ENST00000536239 TLR9Q9NR96 1032 aa4.25□□□□□ -1.73
SKA3-207ENST00000536239 PPARGC1AQ9UBK2 798 aaKnown RBP4.25□□□□□ -1.73
SKA3-207ENST00000536239 TELO2Q9Y4R8 837 aa4.25□□□□□ -1.73
SKA3-207ENST00000536239 NUB1Q9Y5A7 615 aa4.25□□□□□ -1.73
SKA3-207ENST00000536239 MSCO60682 206 aa4.24□□□□□ -1.73
SKA3-207ENST00000536239 CAPNS1P04632 268 aa4.24□□□□□ -1.73
SKA3-207ENST00000536239 LMO1P25800 156 aa4.24□□□□□ -1.73
SKA3-207ENST00000536239 GJA8P48165 433 aa4.24□□□□□ -1.73
SKA3-207ENST00000536239 NFYCQ13952 458 aa4.24□□□□□ -1.73
SKA3-207ENST00000536239 C6orf15Q6UXA7 325 aaPredicted RBP4.24□□□□□ -1.73
SKA3-207ENST00000536239 DPP8Q6V1X1 898 aaPredicted RBP4.24□□□□□ -1.73
SKA3-207ENST00000536239 MICAL1Q8TDZ2 1067 aa4.24□□□□□ -1.73
SKA3-207ENST00000536239 MSL2Q9HCI7 577 aa4.24□□□□□ -1.73
SKA3-207ENST00000536239 GPR27Q9NS67 375 aa4.24□□□□□ -1.73
SKA3-207ENST00000536239 PLA2G3Q9NZ20 509 aa4.24□□□□□ -1.73
SKA3-207ENST00000536239 CEP72Q9P209 647 aa4.24□□□□□ -1.73
SKA3-207ENST00000536239 ACOT7O00154 380 aa4.23□□□□□ -1.73
SKA3-207ENST00000536239 ARHGAP6O43182 974 aa4.23□□□□□ -1.73
SKA3-207ENST00000536239 SUSD5O60279 629 aa4.23□□□□□ -1.73
SKA3-207ENST00000536239 COL6A2P12110 1019 aa4.23□□□□□ -1.73
SKA3-207ENST00000536239 KRT4P19013 534 aa4.23□□□□□ -1.73
SKA3-207ENST00000536239 MSX2P35548 267 aaPredicted RBP4.23□□□□□ -1.73
SKA3-207ENST00000536239 ETV4P43268 484 aa4.23□□□□□ -1.73
SKA3-207ENST00000536239 EPHA5P54756 1037 aa4.23□□□□□ -1.73
SKA3-207ENST00000536239 COL10A1Q03692 680 aa4.23□□□□□ -1.73
SKA3-207ENST00000536239 SPIRE1Q08AE8 756 aa4.23□□□□□ -1.73
SKA3-207ENST00000536239 TBR1Q16650 682 aa4.23□□□□□ -1.73
SKA3-207ENST00000536239 Q6ZPA2 131 aa4.23□□□□□ -1.73
SKA3-207ENST00000536239 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.23□□□□□ -1.73
SKA3-207ENST00000536239 CFHR4Q92496 578 aa4.23□□□□□ -1.73
SKA3-207ENST00000536239 ANAPC16Q96DE5 110 aa4.23□□□□□ -1.73
SKA3-207ENST00000536239 NAF1Q96HR8 494 aaKnown RBP4.23□□□□□ -1.73
SKA3-207ENST00000536239 SEC16BQ96JE7 1060 aa4.23□□□□□ -1.73
SKA3-207ENST00000536239 SLC39A2Q9NP94 309 aa4.23□□□□□ -1.73
SKA3-207ENST00000536239 PUF60Q9UHX1 559 aaKnown RBP4.23□□□□□ -1.73
SKA3-207ENST00000536239 REXO2Q9Y3B8 237 aaKnown RBP4.23□□□□□ -1.73
SKA3-207ENST00000536239 NKRFO15226 690 aaKnown RBP eCLIP4.22□□□□□ -1.73
SKA3-207ENST00000536239 MAP4K2Q12851 820 aa4.22□□□□□ -1.73
SKA3-207ENST00000536239 HABP4Q5JVS0 413 aaKnown RBP4.22□□□□□ -1.73
SKA3-207ENST00000536239 SGMS1Q86VZ5 419 aa4.22□□□□□ -1.73
SKA3-207ENST00000536239 METTL16Q86W50 562 aaKnown RBP4.22□□□□□ -1.73
SKA3-207ENST00000536239 TMPRSS6Q8IU80 811 aa4.22□□□□□ -1.73
SKA3-207ENST00000536239 FAM178BQ8IXR5 827 aa4.22□□□□□ -1.73
SKA3-207ENST00000536239 KCTD13Q8WZ19 329 aa4.22□□□□□ -1.73
SKA3-207ENST00000536239 TTPALQ9BTX7 342 aa4.22□□□□□ -1.73
SKA3-207ENST00000536239 ZDHHC5Q9C0B5 715 aa4.22□□□□□ -1.73
SKA3-207ENST00000536239 SLC2A4RGQ9NR83 387 aa4.22□□□□□ -1.73
SKA3-207ENST00000536239 DSEQ9UL01 958 aa4.22□□□□□ -1.73
SKA3-207ENST00000536239 STRIP2Q9ULQ0 834 aa4.22□□□□□ -1.73
SKA3-207ENST00000536239 TTBK1Q5TCY1 1321 aaPredicted RBP4.21□□□□□ -1.73
SKA3-207ENST00000536239 SCAMP3O14828 347 aaKnown RBP4.21□□□□□ -1.74
SKA3-207ENST00000536239 FOXN1O15353 648 aa4.21□□□□□ -1.74
SKA3-207ENST00000536239 GNAT1P11488 350 aa4.21□□□□□ -1.74
SKA3-207ENST00000536239 GRIA2P42262 883 aa4.21□□□□□ -1.74
SKA3-207ENST00000536239 IL12RB1P42701 662 aa4.21□□□□□ -1.74
SKA3-207ENST00000536239 ATXN1P54253 815 aaKnown RBP4.21□□□□□ -1.74
SKA3-207ENST00000536239 HHEXQ03014 270 aa4.21□□□□□ -1.74
SKA3-207ENST00000536239 DBPQ10586 325 aaPredicted RBP4.21□□□□□ -1.74
SKA3-207ENST00000536239 LRCH2Q5VUJ6 765 aa4.21□□□□□ -1.74
SKA3-207ENST00000536239 RSPO2Q6UXX9 243 aaPredicted RBP4.21□□□□□ -1.74
SKA3-207ENST00000536239 USP30Q70CQ3 517 aa4.21□□□□□ -1.74
SKA3-207ENST00000536239 KCTD1Q719H9 257 aa4.21□□□□□ -1.74
SKA3-207ENST00000536239 THEMISQ8N1K5 641 aaPredicted RBP4.21□□□□□ -1.74
SKA3-207ENST00000536239 PHF20Q9BVI0 1012 aa4.21□□□□□ -1.74
SKA3-207ENST00000536239 NELFAQ9H3P2 528 aa4.21□□□□□ -1.74
SKA3-207ENST00000536239 PARPBPQ9NWS1 579 aa4.21□□□□□ -1.74
SKA3-207ENST00000536239 GIT1Q9Y2X7 761 aa4.21□□□□□ -1.74
SKA3-207ENST00000536239 KRTAP23-1A1A580 65 aa4.2□□□□□ -1.74
SKA3-207ENST00000536239 B2RBV5 119 aa4.2□□□□□ -1.74
SKA3-207ENST00000536239 PEX11BO96011 259 aa4.2□□□□□ -1.74
SKA3-207ENST00000536239 BMP5P22003 454 aa4.2□□□□□ -1.74
SKA3-207ENST00000536239 FBLP22087 321 aaKnown RBP4.2□□□□□ -1.74
SKA3-207ENST00000536239 GRK2P25098 689 aa4.2□□□□□ -1.74
SKA3-207ENST00000536239 GRK3P35626 688 aa4.2□□□□□ -1.74
SKA3-207ENST00000536239 GRM7Q14831 915 aa4.2□□□□□ -1.74
SKA3-207ENST00000536239 WDR72Q3MJ13 1102 aa4.2□□□□□ -1.74
SKA3-207ENST00000536239 LARP4Q71RC2 724 aaKnown RBP eCLIP4.2□□□□□ -1.74
SKA3-207ENST00000536239 ADGRE4PQ86SQ3 457 aa4.2□□□□□ -1.74
SKA3-207ENST00000536239 KCNJ15Q99712 375 aa4.2□□□□□ -1.74
SKA3-207ENST00000536239 KIAA1683Q9H0B3 1180 aa4.2□□□□□ -1.74
SKA3-207ENST00000536239 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.2□□□□□ -1.74
SKA3-207ENST00000536239 TMEM191CA6NGB0 347 aa4.19□□□□□ -1.74
SKA3-207ENST00000536239 HMGCRP04035 888 aa4.19□□□□□ -1.74
SKA3-207ENST00000536239 PDE6AP16499 860 aa4.19□□□□□ -1.74
SKA3-207ENST00000536239 KCNQ1P51787 676 aa4.19□□□□□ -1.74
SKA3-207ENST00000536239 CSRP2Q16527 193 aa4.19□□□□□ -1.74
SKA3-207ENST00000536239 CCDC142Q17RM4 750 aa4.19□□□□□ -1.74
SKA3-207ENST00000536239 SPTY2D1Q68D10 685 aaPredicted RBP4.19□□□□□ -1.74
SKA3-207ENST00000536239 LAIR1Q6GTX8 287 aa4.19□□□□□ -1.74
SKA3-207ENST00000536239 LBX2Q6XYB7 198 aa4.19□□□□□ -1.74
SKA3-207ENST00000536239 USP53Q70EK8 1073 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms