RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 CHAMP1Q96JM3 812 aa5.24□□□□□ -1.57
USP48-215ENST00000534705 MRPS23Q9Y3D9 190 aaKnown RBP5.24□□□□□ -1.57
USP48-215ENST00000534705 SIT1Q9Y3P8 196 aa5.24□□□□□ -1.57
USP48-215ENST00000534705 WNT9AO14904 365 aa5.23□□□□□ -1.57
USP48-215ENST00000534705 HGSO14964 777 aaPredicted RBP5.23□□□□□ -1.57
USP48-215ENST00000534705 TADA3O75528 432 aa5.23□□□□□ -1.57
USP48-215ENST00000534705 FOXE3Q13461 319 aa5.23□□□□□ -1.57
USP48-215ENST00000534705 BMS1Q14692 1282 aaKnown RBP5.23□□□□□ -1.57
USP48-215ENST00000534705 TRIM61Q5EBN2 209 aa5.23□□□□□ -1.57
USP48-215ENST00000534705 HABP4Q5JVS0 413 aaKnown RBP5.23□□□□□ -1.57
USP48-215ENST00000534705 FAM209AQ5JX71 171 aa5.23□□□□□ -1.57
USP48-215ENST00000534705 STEAP3Q658P3 488 aa5.23□□□□□ -1.57
USP48-215ENST00000534705 KCNT2Q6UVM3 1135 aa5.23□□□□□ -1.57
USP48-215ENST00000534705 FAM26EQ8N5C1 309 aa5.23□□□□□ -1.57
USP48-215ENST00000534705 TTLL11Q8NHH1 800 aa5.23□□□□□ -1.57
USP48-215ENST00000534705 YTHDC1Q96MU7 727 aaKnown RBP5.23□□□□□ -1.57
USP48-215ENST00000534705 SYT3Q9BQG1 590 aa5.23□□□□□ -1.57
USP48-215ENST00000534705 ALG1Q9BT22 464 aa5.23□□□□□ -1.57
USP48-215ENST00000534705 PDGFDQ9GZP0 370 aaPredicted RBP5.23□□□□□ -1.57
USP48-215ENST00000534705 NESP48681 1621 aa5.23□□□□□ -1.57
USP48-215ENST00000534705 RSF1Q96T23 1441 aaPredicted RBP5.23□□□□□ -1.57
USP48-215ENST00000534705 THOC2Q8NI27 1593 aaKnown RBP5.22□□□□□ -1.57
USP48-215ENST00000534705 LAMC3Q9Y6N6 1575 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 BLACEA4D250 179 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 KRIT1O00522 736 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 EFCAB14O75071 495 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 TGM1P22735 817 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 IL13P35225 146 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 NKX3-2P78367 333 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 ABHD18Q0P651 414 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 KBTBD2Q8IY47 623 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 MBD6Q96DN6 1003 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 CHFRQ96EP1 664 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 WWC2-AS2Q96NR7 200 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 MRPL4Q9BYD3 311 aaKnown RBP5.22□□□□□ -1.57
USP48-215ENST00000534705 SMOC1Q9H4F8 434 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 SLC6A20Q9NP91 592 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 NUB1Q9Y5A7 615 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 PCDHB4Q9Y5E5 795 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 PTCH2Q9Y6C5 1203 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 TOP2AP11388 1531 aaKnown RBP5.22□□□□□ -1.57
USP48-215ENST00000534705 ASXL2Q76L83 1435 aa5.22□□□□□ -1.57
USP48-215ENST00000534705 TCRBV5S2A0A599 114 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 FAM47E-STBD1D6RA91 191 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 NPIPB8E9PQR5 432 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 ARVCFO00192 962 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 KCNQ2O43526 872 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 SOD2P04179 222 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 SPIRE1Q08AE8 756 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 PAK1Q13153 545 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 CCDC144BQ3MJ40 725 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 OTOP3Q7RTS5 596 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 MILR1Q7Z6M3 343 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 TRIM48Q8IWZ4 208 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 KLHL36Q8N4N3 616 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 AMER2Q8N7J2 671 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 GSTCDQ8NEC7 633 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 UHMK1Q8TAS1 419 aaKnown RBP5.21□□□□□ -1.58
USP48-215ENST00000534705 Q8TCH9 128 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 ZSWIM4Q9H7M6 989 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 HSPBP1Q9NZL4 362 aa5.21□□□□□ -1.58
USP48-215ENST00000534705 PPARGC1AQ9UBK2 798 aaKnown RBP5.21□□□□□ -1.58
USP48-215ENST00000534705 B4GALT4O60513 344 aa5.2□□□□□ -1.58
USP48-215ENST00000534705 DPTQ07507 201 aa5.2□□□□□ -1.58
USP48-215ENST00000534705 ADAM9Q13443 819 aa5.2□□□□□ -1.58
USP48-215ENST00000534705 PRKD1Q15139 912 aaPredicted RBP5.2□□□□□ -1.58
USP48-215ENST00000534705 MIIPQ5JXC2 388 aa5.2□□□□□ -1.58
USP48-215ENST00000534705 LILRB2Q8N423 598 aa5.2□□□□□ -1.58
USP48-215ENST00000534705 CLIC6Q96NY7 704 aa5.2□□□□□ -1.58
USP48-215ENST00000534705 WRNIP1Q96S55 665 aa5.2□□□□□ -1.58
USP48-215ENST00000534705 CEP89Q96ST8 783 aa5.2□□□□□ -1.58
USP48-215ENST00000534705 BARX1Q9HBU1 254 aaPredicted RBP5.2□□□□□ -1.58
USP48-215ENST00000534705 DTLQ9NZJ0 730 aa5.2□□□□□ -1.58
USP48-215ENST00000534705 MYOTQ9UBF9 498 aa5.2□□□□□ -1.58
USP48-215ENST00000534705 ASH2LQ9UBL3 628 aa5.2□□□□□ -1.58
USP48-215ENST00000534705 SFMBT1Q9UHJ3 866 aa5.2□□□□□ -1.58
USP48-215ENST00000534705 MTDHQ86UE4 582 aaKnown RBP5.19□□□□□ -1.58
USP48-215ENST00000534705 PIP4K2CQ8TBX8 421 aa5.19□□□□□ -1.58
USP48-215ENST00000534705 YIPF4Q9BSR8 244 aa5.19□□□□□ -1.58
USP48-215ENST00000534705 NCOA5Q9HCD5 579 aaKnown RBP5.19□□□□□ -1.58
USP48-215ENST00000534705 FTSJ1Q9UET6 329 aa5.19□□□□□ -1.58
USP48-215ENST00000534705 TRAF6Q9Y4K3 522 aa5.19□□□□□ -1.58
USP48-215ENST00000534705 APPP05067 770 aa5.18□□□□□ -1.58
USP48-215ENST00000534705 GNAT1P11488 350 aa5.18□□□□□ -1.58
USP48-215ENST00000534705 MCM7P33993 719 aa5.18□□□□□ -1.58
USP48-215ENST00000534705 EPHA5P54756 1037 aa5.18□□□□□ -1.58
USP48-215ENST00000534705 NFATC3Q12968 1075 aa5.18□□□□□ -1.58
USP48-215ENST00000534705 SYNPOQ8N3V7 929 aa5.18□□□□□ -1.58
USP48-215ENST00000534705 ZNF503Q96F45 646 aa5.18□□□□□ -1.58
USP48-215ENST00000534705 TOE1Q96GM8 510 aaKnown RBP5.18□□□□□ -1.58
USP48-215ENST00000534705 JAM3Q9BX67 310 aa5.18□□□□□ -1.58
USP48-215ENST00000534705 IPPKQ9H8X2 491 aa5.18□□□□□ -1.58
USP48-215ENST00000534705 SEC61A2Q9H9S3 476 aa5.18□□□□□ -1.58
USP48-215ENST00000534705 SLC52A2Q9HAB3 445 aa5.18□□□□□ -1.58
USP48-215ENST00000534705 TMEM260Q9NX78 707 aa5.18□□□□□ -1.58
USP48-215ENST00000534705 PLD2O14939 933 aa5.17□□□□□ -1.58
USP48-215ENST00000534705 GSTA4O15217 222 aa5.17□□□□□ -1.58
USP48-215ENST00000534705 NPTXRO95502 500 aa5.17□□□□□ -1.58
USP48-215ENST00000534705 GUCY1A3Q02108 690 aa5.17□□□□□ -1.58
USP48-215ENST00000534705 CR1LQ2VPA4 569 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms