RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 ACTR2P61160 394 aa16.81■□□□□ 0.28
VPS28-215ENST00000531924 AP3B2Q13367 1082 aa16.81■□□□□ 0.28
VPS28-215ENST00000531924 MKRN4PQ13434 485 aaPredicted RBP16.81■□□□□ 0.28
VPS28-215ENST00000531924 ADCK5Q3MIX3 580 aa16.81■□□□□ 0.28
VPS28-215ENST00000531924 EPC2Q52LR7 807 aa16.81■□□□□ 0.28
VPS28-215ENST00000531924 IER5Q5VY09 327 aa16.81■□□□□ 0.28
VPS28-215ENST00000531924 SP7Q8TDD2 431 aaPredicted RBP16.81■□□□□ 0.28
VPS28-215ENST00000531924 IL17RAQ96F46 866 aa16.81■□□□□ 0.28
VPS28-215ENST00000531924 BARHL2Q9NY43 387 aa16.81■□□□□ 0.28
VPS28-215ENST00000531924 NFASCO94856 1347 aa16.8■□□□□ 0.28
VPS28-215ENST00000531924 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.8■□□□□ 0.28
VPS28-215ENST00000531924 INSRRP14616 1297 aa16.8■□□□□ 0.28
VPS28-215ENST00000531924 STAT5BP51692 787 aa16.8■□□□□ 0.28
VPS28-215ENST00000531924 RCAN1P53805 252 aa16.8■□□□□ 0.28
VPS28-215ENST00000531924 MRPS6P82932 125 aaKnown RBP16.8■□□□□ 0.28
VPS28-215ENST00000531924 AKAP17AQ02040 695 aaKnown RBP16.8■□□□□ 0.28
VPS28-215ENST00000531924 GPM6BQ13491 265 aa16.8■□□□□ 0.28
VPS28-215ENST00000531924 FIBCD1Q8N539 461 aa16.8■□□□□ 0.28
VPS28-215ENST00000531924 CYP2W1Q8TAV3 490 aa16.8■□□□□ 0.28
VPS28-215ENST00000531924 CCDC12Q8WUD4 166 aaPredicted RBP16.8■□□□□ 0.28
VPS28-215ENST00000531924 JAKMIP1Q96N16 626 aaKnown RBP16.8■□□□□ 0.28
VPS28-215ENST00000531924 OSBPL7Q9BZF2 842 aa16.8■□□□□ 0.28
VPS28-215ENST00000531924 AGO4Q9HCK5 861 aaKnown RBP16.8■□□□□ 0.28
VPS28-215ENST00000531924 CDY2AQ9Y6F7 541 aa16.8■□□□□ 0.28
VPS28-215ENST00000531924 MBLAC1A4D2B0 266 aaPredicted RBP16.79■□□□□ 0.28
VPS28-215ENST00000531924 BACH1O14867 736 aa16.79■□□□□ 0.28
VPS28-215ENST00000531924 ARP10275 920 aa16.79■□□□□ 0.28
VPS28-215ENST00000531924 FUT2Q10981 343 aa16.79■□□□□ 0.28
VPS28-215ENST00000531924 LPIN1Q14693 890 aa16.79■□□□□ 0.28
VPS28-215ENST00000531924 TYW1BQ6NUM6 668 aa16.79■□□□□ 0.28
VPS28-215ENST00000531924 BLOC1S2Q6QNY1 142 aa16.79■□□□□ 0.28
VPS28-215ENST00000531924 TSHZ1Q6ZSZ6 1077 aa16.79■□□□□ 0.28
VPS28-215ENST00000531924 PLPPR4Q7Z2D5 763 aa16.79■□□□□ 0.28
VPS28-215ENST00000531924 TMEM192Q8IY95 271 aa16.79■□□□□ 0.28
VPS28-215ENST00000531924 MRPL38Q96DV4 380 aaKnown RBP16.79■□□□□ 0.28
VPS28-215ENST00000531924 CCDC136Q96JN2 1154 aa16.79■□□□□ 0.28
VPS28-215ENST00000531924 TMEM260Q9NX78 707 aa16.79■□□□□ 0.28
VPS28-215ENST00000531924 TCEAL9Q9UHQ7 104 aa16.79■□□□□ 0.28
VPS28-215ENST00000531924 REV3LO60673 3130 aa16.78■□□□□ 0.28
VPS28-215ENST00000531924 DDX39AO00148 427 aaKnown RBP16.78■□□□□ 0.28
VPS28-215ENST00000531924 MEIS1O00470 390 aa16.78■□□□□ 0.28
VPS28-215ENST00000531924 SCG2P13521 617 aa16.78■□□□□ 0.28
VPS28-215ENST00000531924 ADD1P35611 737 aaKnown RBP16.78■□□□□ 0.28
VPS28-215ENST00000531924 SREBF1P36956 1147 aa16.78■□□□□ 0.28
VPS28-215ENST00000531924 SLC26A2P50443 739 aa16.78■□□□□ 0.28
VPS28-215ENST00000531924 APOBRQ0VD83 1088 aa16.78■□□□□ 0.28
VPS28-215ENST00000531924 TIGD5Q53EQ6 642 aa16.78■□□□□ 0.28
VPS28-215ENST00000531924 FBXO47Q5MNV8 452 aa16.78■□□□□ 0.28
VPS28-215ENST00000531924 MARCH8Q5T0T0 291 aa16.78■□□□□ 0.28
VPS28-215ENST00000531924 JAKMIP3Q5VZ66 844 aa16.78■□□□□ 0.28
VPS28-215ENST00000531924 FAM160B1Q5W0V3 765 aa16.78■□□□□ 0.28
VPS28-215ENST00000531924 MCTP2Q6DN12 878 aa16.78■□□□□ 0.28
VPS28-215ENST00000531924 Q6ZUG5 572 aa16.78■□□□□ 0.28
VPS28-215ENST00000531924 UBE2ZQ9H832 354 aaPredicted RBP16.78■□□□□ 0.28
VPS28-215ENST00000531924 C6orf50Q9HD87 102 aa16.78■□□□□ 0.28
VPS28-215ENST00000531924 PTPRSQ13332 1948 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 POTEB3A0JP26 581 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 H3BNC9 293 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 ENPP3O14638 875 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 KCNA5P22460 613 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 CDC27P30260 824 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 CTNNB1P35222 781 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 MGAT3Q09327 533 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 TMEM62Q0P6H9 643 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 ITGB3BPQ13352 177 aaPredicted RBP16.77■□□□□ 0.28
VPS28-215ENST00000531924 PLCB4Q15147 1175 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 PFKFB3Q16875 520 aaPredicted RBP16.77■□□□□ 0.28
VPS28-215ENST00000531924 POTEBQ6S5H4 581 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 EP400NLQ6ZTU2 488 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 NIPA1Q7RTP0 329 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 PLA2G4DQ86XP0 818 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 BRF1Q92994 677 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 PCYT2Q99447 389 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 RWDD3Q9Y3V2 267 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 PCDHA2Q9Y5H9 948 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 TRPV2Q9Y5S1 764 aa16.77■□□□□ 0.28
VPS28-215ENST00000531924 DOCK5Q9H7D0 1870 aa16.77■□□□□ 0.27
VPS28-215ENST00000531924 XIRP2A4UGR9 3374 aa16.77■□□□□ 0.27
VPS28-215ENST00000531924 REC8O95072 547 aa16.76■□□□□ 0.27
VPS28-215ENST00000531924 CPA1P15085 419 aa16.76■□□□□ 0.27
VPS28-215ENST00000531924 PAK2Q13177 524 aa16.76■□□□□ 0.27
VPS28-215ENST00000531924 BTG3Q14201 252 aaPredicted RBP16.76■□□□□ 0.27
VPS28-215ENST00000531924 MIS18BP1Q6P0N0 1132 aa16.76■□□□□ 0.27
VPS28-215ENST00000531924 CKAP2LQ8IYA6 745 aa16.76■□□□□ 0.27
VPS28-215ENST00000531924 NME8Q8N427 588 aa16.76■□□□□ 0.27
VPS28-215ENST00000531924 BANK1Q8NDB2 785 aa16.76■□□□□ 0.27
VPS28-215ENST00000531924 TRAPPC12Q8WVT3 735 aa16.76■□□□□ 0.27
VPS28-215ENST00000531924 ZBTB10Q96DT7 871 aa16.76■□□□□ 0.27
VPS28-215ENST00000531924 C1QTNF1Q9BXJ1 281 aa16.76■□□□□ 0.27
VPS28-215ENST00000531924 FTHL17Q9BXU8 183 aa16.76■□□□□ 0.27
VPS28-215ENST00000531924 FAM217BQ9NTX9 383 aaPredicted RBP16.76■□□□□ 0.27
VPS28-215ENST00000531924 COL4A4P53420 1690 aaPredicted RBP16.75■□□□□ 0.27
VPS28-215ENST00000531924 BDP1A6H8Y1 2624 aa16.75■□□□□ 0.27
VPS28-215ENST00000531924 RB1P06400 928 aa16.75■□□□□ 0.27
VPS28-215ENST00000531924 COL9A1P20849 921 aa16.75■□□□□ 0.27
VPS28-215ENST00000531924 PSMA5P28066 241 aa16.75■□□□□ 0.27
VPS28-215ENST00000531924 GNA11P29992 359 aa16.75■□□□□ 0.27
VPS28-215ENST00000531924 CD52P31358 61 aa16.75■□□□□ 0.27
VPS28-215ENST00000531924 KRT76Q01546 638 aa16.75■□□□□ 0.27
VPS28-215ENST00000531924 PDXDC2PQ6P474 469 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms