RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 NEK9Q8TD19 979 aa17.6■□□□□ 0.41
USH1C-204ENST00000526313 PIGOQ8TEQ8 1089 aa17.6■□□□□ 0.41
USH1C-204ENST00000526313 C12orf42Q96LP6 360 aa17.6■□□□□ 0.41
USH1C-204ENST00000526313 PCMTD1Q96MG8 357 aaPredicted RBP17.6■□□□□ 0.41
USH1C-204ENST00000526313 TANGO6Q9C0B7 1094 aa17.6■□□□□ 0.41
USH1C-204ENST00000526313 RPAP3Q9H6T3 665 aaPredicted RBP17.6■□□□□ 0.41
USH1C-204ENST00000526313 KCNH7Q9NS40 1196 aa17.6■□□□□ 0.41
USH1C-204ENST00000526313 KCND2Q9NZV8 630 aa17.6■□□□□ 0.41
USH1C-204ENST00000526313 FAM184BQ9ULE4 1060 aa17.6■□□□□ 0.41
USH1C-204ENST00000526313 EIF3CLB5ME19 914 aaKnown RBP17.59■□□□□ 0.41
USH1C-204ENST00000526313 ALAS1P13196 640 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 ZNF131P52739 623 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 HERVK_113P62684 666 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 ADAM9Q13443 819 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 ARHGAP29Q52LW3 1261 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 IL31RAQ8NI17 732 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 BAP1Q92560 729 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 EIF3CQ99613 913 aaKnown RBP17.59■□□□□ 0.41
USH1C-204ENST00000526313 ZHX3Q9H4I2 956 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 NHEJ1Q9H9Q4 299 aaPredicted RBP17.59■□□□□ 0.41
USH1C-204ENST00000526313 JADE2Q9NQC1 790 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 WRAP73Q9P2S5 460 aaPredicted RBP17.59■□□□□ 0.41
USH1C-204ENST00000526313 RLFQ13129 1914 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 VWA5AO00534 786 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 CETN3O15182 167 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 PTPRAP18433 802 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 MRPS9P82933 396 aaKnown RBP17.59■□□□□ 0.41
USH1C-204ENST00000526313 CCDC40Q4G0X9 1142 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 CPXCR1Q8N123 301 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 PDCL2Q8N4E4 241 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 ZNF280CQ8ND82 737 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 ZFP91Q96JP5 570 aaPredicted RBP17.59■□□□□ 0.41
USH1C-204ENST00000526313 HAUS4Q9H6D7 363 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 AS3MTQ9HBK9 375 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 ADAMTS5Q9UNA0 930 aa17.59■□□□□ 0.41
USH1C-204ENST00000526313 EIF3DO15371 548 aaKnown RBP eCLIP17.58■□□□□ 0.4
USH1C-204ENST00000526313 CHMP2AO43633 222 aa17.58■□□□□ 0.4
USH1C-204ENST00000526313 ZBED4O75132 1171 aa17.58■□□□□ 0.4
USH1C-204ENST00000526313 TBCAO75347 108 aaKnown RBP17.58■□□□□ 0.4
USH1C-204ENST00000526313 TADA3O75528 432 aa17.58■□□□□ 0.4
USH1C-204ENST00000526313 MYBP10242 640 aa17.58■□□□□ 0.4
USH1C-204ENST00000526313 CYLC1P35663 651 aaPredicted RBP17.58■□□□□ 0.4
USH1C-204ENST00000526313 KRT83P78385 493 aa17.58■□□□□ 0.4
USH1C-204ENST00000526313 TKFCQ3LXA3 575 aa17.58■□□□□ 0.4
USH1C-204ENST00000526313 ANGEL2Q5VTE6 544 aaKnown RBP17.58■□□□□ 0.4
USH1C-204ENST00000526313 FRMD5Q7Z6J6 570 aa17.58■□□□□ 0.4
USH1C-204ENST00000526313 NLGN2Q8NFZ4 835 aa17.58■□□□□ 0.4
USH1C-204ENST00000526313 FIZ1Q96SL8 496 aa17.58■□□□□ 0.4
USH1C-204ENST00000526313 AGO4Q9HCK5 861 aaKnown RBP17.58■□□□□ 0.4
USH1C-204ENST00000526313 GPRC5DQ9NZD1 345 aa17.58■□□□□ 0.4
USH1C-204ENST00000526313 CGNQ9P2M7 1197 aaKnown RBP17.58■□□□□ 0.4
USH1C-204ENST00000526313 ZBTB39O15060 712 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 RPS6P62753 249 aaKnown RBP17.57■□□□□ 0.4
USH1C-204ENST00000526313 TUBB2AQ13885 445 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 NFIL3Q16649 462 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 ZNF569Q5MCW4 686 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 REPS2Q8NFH8 660 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 TUBB2BQ9BVA1 445 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 BCAS3Q9H6U6 928 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 MMRN2Q9H8L6 949 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 FAM207AQ9NSI2 230 aaPredicted RBP17.57■□□□□ 0.4
USH1C-204ENST00000526313 TYW1Q9NV66 732 aaKnown RBP17.57■□□□□ 0.4
USH1C-204ENST00000526313 SEL1LQ9UBV2 794 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 PPP2R3BQ9Y5P8 575 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 LOXHD1Q8IVV2 1947 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 PHIPQ8WWQ0 1821 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 EFCAB8A8MWE9 144 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 CALUO43852 315 aaPredicted RBP17.57■□□□□ 0.4
USH1C-204ENST00000526313 NOL4O94818 638 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 PRPF6O94906 941 aaKnown RBP17.57■□□□□ 0.4
USH1C-204ENST00000526313 LCA5LO95447 670 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 NR2F2P24468 414 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 GUCY2CP25092 1073 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 ELF2Q15723 593 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 TRPM4Q8TD43 1214 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 ZKSCAN4Q969J2 545 aaPredicted RBP17.57■□□□□ 0.4
USH1C-204ENST00000526313 TAAR1Q96RJ0 339 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 CARD6Q9BX69 1037 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.57■□□□□ 0.4
USH1C-204ENST00000526313 ODF2LQ9ULJ1 636 aa17.57■□□□□ 0.4
USH1C-204ENST00000526313 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.57■□□□□ 0.4
USH1C-204ENST00000526313 V9GYY5 206 aaPredicted RBP17.57■□□□□ 0.4
USH1C-204ENST00000526313 C19orf81C9J6K1 198 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 OAZ1P54368 228 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 ITGB3BPQ13352 177 aaPredicted RBP17.56■□□□□ 0.4
USH1C-204ENST00000526313 ERCC6LQ2NKX8 1250 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 SLC35F6Q8N357 371 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 TRERF1Q96PN7 1200 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 WRNIP1Q96S55 665 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 LXNQ9BS40 222 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 ASTN1O14525 1302 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 DICER1Q9UPY3 1922 aaKnown RBP17.56■□□□□ 0.4
USH1C-204ENST00000526313 LYPLA2O95372 231 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 PPP2R3AQ06190 1150 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 PGM5Q15124 567 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 GPC2Q8N158 579 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 CCDC155Q8N6L0 562 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 NEK11Q8NG66 645 aa17.56■□□□□ 0.4
USH1C-204ENST00000526313 SMCR8Q8TEV9 937 aaPredicted RBP17.56■□□□□ 0.4
USH1C-204ENST00000526313 SYN2Q92777 582 aaPredicted RBP17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms