RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 DDAH1O94760 285 aa16.43■□□□□ 0.22
CPSF1-201ENST00000526271 CSPG5O95196 566 aa16.43■□□□□ 0.22
CPSF1-201ENST00000526271 SSTR3P32745 418 aaPredicted RBP16.43■□□□□ 0.22
CPSF1-201ENST00000526271 PPFIA1Q13136 1202 aa16.43■□□□□ 0.22
CPSF1-201ENST00000526271 CLUL1Q15846 466 aa16.43■□□□□ 0.22
CPSF1-201ENST00000526271 SMARCC2Q8TAQ2 1214 aa16.43■□□□□ 0.22
CPSF1-201ENST00000526271 TRAPPC12Q8WVT3 735 aa16.43■□□□□ 0.22
CPSF1-201ENST00000526271 GPRASP2Q96D09 838 aa16.43■□□□□ 0.22
CPSF1-201ENST00000526271 MAP3K14Q99558 947 aa16.43■□□□□ 0.22
CPSF1-201ENST00000526271 TMX1Q9H3N1 280 aa16.43■□□□□ 0.22
CPSF1-201ENST00000526271 ALG13Q9NP73 1137 aaKnown RBP16.43■□□□□ 0.22
CPSF1-201ENST00000526271 TUBE1Q9UJT0 475 aa16.43■□□□□ 0.22
CPSF1-201ENST00000526271 PCDHGC5Q9Y5F6 944 aa16.43■□□□□ 0.22
CPSF1-201ENST00000526271 MRPL42Q9Y6G3 142 aaKnown RBP16.43■□□□□ 0.22
CPSF1-201ENST00000526271 USP34Q70CQ2 3546 aa16.43■□□□□ 0.22
CPSF1-201ENST00000526271 WDR81Q562E7 1941 aa16.43■□□□□ 0.22
CPSF1-201ENST00000526271 ADAMTS3O15072 1205 aa16.42■□□□□ 0.22
CPSF1-201ENST00000526271 DCXO43602 365 aa16.42■□□□□ 0.22
CPSF1-201ENST00000526271 GNAT1P11488 350 aa16.42■□□□□ 0.22
CPSF1-201ENST00000526271 SMARCA1P28370 1054 aa16.42■□□□□ 0.22
CPSF1-201ENST00000526271 CD52P31358 61 aa16.42■□□□□ 0.22
CPSF1-201ENST00000526271 SMAD2Q15796 467 aaKnown RBP16.42■□□□□ 0.22
CPSF1-201ENST00000526271 XRRA1Q6P2D8 792 aa16.42■□□□□ 0.22
CPSF1-201ENST00000526271 CATIPQ7Z7H3 387 aa16.42■□□□□ 0.22
CPSF1-201ENST00000526271 SEPT1Q8WYJ6 367 aa16.42■□□□□ 0.22
CPSF1-201ENST00000526271 LSG1Q9H089 658 aaKnown RBP16.42■□□□□ 0.22
CPSF1-201ENST00000526271 CLEC1BQ9P126 229 aa16.42■□□□□ 0.22
CPSF1-201ENST00000526271 ZNF215Q9UL58 517 aaPredicted RBP16.42■□□□□ 0.22
CPSF1-201ENST00000526271 ITGB1P05556 798 aa16.41■□□□□ 0.22
CPSF1-201ENST00000526271 RB1P06400 928 aa16.41■□□□□ 0.22
CPSF1-201ENST00000526271 INSRRP14616 1297 aa16.41■□□□□ 0.22
CPSF1-201ENST00000526271 TMEM62Q0P6H9 643 aa16.41■□□□□ 0.22
CPSF1-201ENST00000526271 TRAF1Q13077 416 aa16.41■□□□□ 0.22
CPSF1-201ENST00000526271 PUS10Q3MIT2 529 aaKnown RBP16.41■□□□□ 0.22
CPSF1-201ENST00000526271 TAF2Q6P1X5 1199 aa16.41■□□□□ 0.22
CPSF1-201ENST00000526271 HFE2Q6ZVN8 426 aa16.41■□□□□ 0.22
CPSF1-201ENST00000526271 RALYLQ86SE5 291 aaKnown RBP16.41■□□□□ 0.22
CPSF1-201ENST00000526271 ALYREFQ86V81 257 aaKnown RBP16.41■□□□□ 0.22
CPSF1-201ENST00000526271 ADHFE1Q8IWW8 467 aa16.41■□□□□ 0.22
CPSF1-201ENST00000526271 RRP36Q96EU6 259 aaKnown RBP16.41■□□□□ 0.22
CPSF1-201ENST00000526271 MSLNLQ96KJ4 702 aa16.41■□□□□ 0.22
CPSF1-201ENST00000526271 LRRC2Q9BYS8 371 aa16.41■□□□□ 0.22
CPSF1-201ENST00000526271 JADE2Q9NQC1 790 aa16.41■□□□□ 0.22
CPSF1-201ENST00000526271 HCSTQ9UBK5 93 aa16.41■□□□□ 0.22
CPSF1-201ENST00000526271 PLAGL2Q9UPG8 496 aa16.41■□□□□ 0.22
CPSF1-201ENST00000526271 ERICH2A1L162 156 aa16.4■□□□□ 0.22
CPSF1-201ENST00000526271 PRC1O43663 620 aa16.4■□□□□ 0.22
CPSF1-201ENST00000526271 GLP2RO95838 553 aa16.4■□□□□ 0.22
CPSF1-201ENST00000526271 MMP1P03956 469 aa16.4■□□□□ 0.22
CPSF1-201ENST00000526271 IGBP1P78318 339 aa16.4■□□□□ 0.22
CPSF1-201ENST00000526271 MRPS6P82932 125 aaKnown RBP16.4■□□□□ 0.22
CPSF1-201ENST00000526271 RBM10P98175 930 aaKnown RBP16.4■□□□□ 0.22
CPSF1-201ENST00000526271 FUT2Q10981 343 aa16.4■□□□□ 0.22
CPSF1-201ENST00000526271 ITGB3BPQ13352 177 aaPredicted RBP16.4■□□□□ 0.22
CPSF1-201ENST00000526271 ADAM15Q13444 863 aa16.4■□□□□ 0.22
CPSF1-201ENST00000526271 TSHZ1Q6ZSZ6 1077 aa16.4■□□□□ 0.22
CPSF1-201ENST00000526271 EP400NLQ6ZTU2 488 aa16.4■□□□□ 0.22
CPSF1-201ENST00000526271 SPPL3Q8TCT6 385 aa16.4■□□□□ 0.22
CPSF1-201ENST00000526271 PGBD1Q96JS3 809 aa16.4■□□□□ 0.22
CPSF1-201ENST00000526271 FBXL18Q96ME1 805 aa16.4■□□□□ 0.22
CPSF1-201ENST00000526271 LMAN2LQ9H0V9 348 aa16.4■□□□□ 0.22
CPSF1-201ENST00000526271 MUTYHQ9UIF7 546 aa16.4■□□□□ 0.22
CPSF1-201ENST00000526271 PCDHA6Q9UN73 950 aa16.4■□□□□ 0.22
CPSF1-201ENST00000526271 PCDHA8Q9Y5H6 950 aa16.4■□□□□ 0.22
CPSF1-201ENST00000526271 KMT2EQ8IZD2 1858 aa16.39■□□□□ 0.22
CPSF1-201ENST00000526271 MGEA5O60502 916 aa16.39■□□□□ 0.21
CPSF1-201ENST00000526271 ARP10275 920 aa16.39■□□□□ 0.21
CPSF1-201ENST00000526271 PLCB4Q15147 1175 aa16.39■□□□□ 0.21
CPSF1-201ENST00000526271 TMTC3Q6ZXV5 915 aa16.39■□□□□ 0.21
CPSF1-201ENST00000526271 NLRX1Q86UT6 975 aa16.39■□□□□ 0.21
CPSF1-201ENST00000526271 VN1R2Q8NFZ6 395 aa16.39■□□□□ 0.21
CPSF1-201ENST00000526271 C11orf84Q9BUA3 381 aaPredicted RBP16.39■□□□□ 0.21
CPSF1-201ENST00000526271 FAM49AQ9H0Q0 323 aaPredicted RBP16.39■□□□□ 0.21
CPSF1-201ENST00000526271 PSTPIP2Q9H939 334 aa16.39■□□□□ 0.21
CPSF1-201ENST00000526271 CDHR5Q9HBB8 845 aa16.39■□□□□ 0.21
CPSF1-201ENST00000526271 ERAP1Q9NZ08 941 aa16.39■□□□□ 0.21
CPSF1-201ENST00000526271 PRKAG3Q9UGI9 489 aa16.39■□□□□ 0.21
CPSF1-201ENST00000526271 CNTNAP5Q8WYK1 1306 aa16.39■□□□□ 0.21
CPSF1-201ENST00000526271 CACNA1HO95180 2353 aa16.38■□□□□ 0.21
CPSF1-201ENST00000526271 SLC27A2O14975 620 aa16.38■□□□□ 0.21
CPSF1-201ENST00000526271 CCNE2O96020 404 aa16.38■□□□□ 0.21
CPSF1-201ENST00000526271 ALADP13716 330 aa16.38■□□□□ 0.21
CPSF1-201ENST00000526271 NHLH1Q02575 133 aa16.38■□□□□ 0.21
CPSF1-201ENST00000526271 MTMR1Q13613 665 aa16.38■□□□□ 0.21
CPSF1-201ENST00000526271 BTG3Q14201 252 aaPredicted RBP16.38■□□□□ 0.21
CPSF1-201ENST00000526271 WWC2Q6AWC2 1192 aa16.38■□□□□ 0.21
CPSF1-201ENST00000526271 CCDC82Q8N4S0 544 aa16.38■□□□□ 0.21
CPSF1-201ENST00000526271 CTCFLQ8NI51 663 aaPredicted RBP16.38■□□□□ 0.21
CPSF1-201ENST00000526271 TMEM40Q8WWA1 233 aa16.38■□□□□ 0.21
CPSF1-201ENST00000526271 CUL5Q93034 780 aa16.38■□□□□ 0.21
CPSF1-201ENST00000526271 IGFLR1Q9H665 355 aa16.38■□□□□ 0.21
CPSF1-201ENST00000526271 KCNH7Q9NS40 1196 aa16.38■□□□□ 0.21
CPSF1-201ENST00000526271 PADI3Q9ULW8 664 aa16.38■□□□□ 0.21
CPSF1-201ENST00000526271 IGSF9BQ9UPX0 1349 aa16.38■□□□□ 0.21
CPSF1-201ENST00000526271 ZBTB42B2RXF5 422 aa16.37■□□□□ 0.21
CPSF1-201ENST00000526271 EYA4O95677 639 aa16.37■□□□□ 0.21
CPSF1-201ENST00000526271 SMAD4Q13485 552 aaKnown RBP16.37■□□□□ 0.21
CPSF1-201ENST00000526271 SART3Q15020 963 aaKnown RBP16.37■□□□□ 0.21
CPSF1-201ENST00000526271 NECTIN1Q15223 517 aa16.37■□□□□ 0.21
CPSF1-201ENST00000526271 TMEM266Q2M3C6 531 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms