RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 IGBP1P78318 339 aa23.72■■□□□ 1.39
VPS28-203ENST00000524521 MBTPS1Q14703 1052 aa23.72■■□□□ 1.39
VPS28-203ENST00000524521 CNKSR3Q6P9H4 555 aa23.72■■□□□ 1.39
VPS28-203ENST00000524521 ABHD15Q6UXT9 468 aa23.72■■□□□ 1.39
VPS28-203ENST00000524521 PLPPR4Q7Z2D5 763 aa23.72■■□□□ 1.39
VPS28-203ENST00000524521 CDX2Q99626 313 aaPredicted RBP23.72■■□□□ 1.39
VPS28-203ENST00000524521 ZNF576Q9H609 170 aa23.72■■□□□ 1.39
VPS28-203ENST00000524521 TRPC6Q9Y210 931 aa23.72■■□□□ 1.39
VPS28-203ENST00000524521 STXBP5LQ9Y2K9 1186 aa23.72■■□□□ 1.39
VPS28-203ENST00000524521 RBAK-RBAKDNI3L0D1 243 aa23.71■■□□□ 1.39
VPS28-203ENST00000524521 M0R2N6 131 aa23.71■■□□□ 1.39
VPS28-203ENST00000524521 BAIAP3O94812 1187 aa23.71■■□□□ 1.39
VPS28-203ENST00000524521 CTSHP09668 335 aa23.71■■□□□ 1.39
VPS28-203ENST00000524521 INSRRP14616 1297 aa23.71■■□□□ 1.39
VPS28-203ENST00000524521 PLCB4Q15147 1175 aa23.71■■□□□ 1.39
VPS28-203ENST00000524521 NPY5RQ15761 445 aa23.71■■□□□ 1.39
VPS28-203ENST00000524521 TNPO1Q92973 898 aaKnown RBP23.71■■□□□ 1.39
VPS28-203ENST00000524521 GTF3C6Q969F1 213 aa23.71■■□□□ 1.39
VPS28-203ENST00000524521 PHF20Q9BVI0 1012 aa23.71■■□□□ 1.39
VPS28-203ENST00000524521 TCEAL9Q9UHQ7 104 aa23.71■■□□□ 1.39
VPS28-203ENST00000524521 RRN3P2A6NIE6 340 aa23.7■■□□□ 1.38
VPS28-203ENST00000524521 CAND2O75155 1236 aa23.7■■□□□ 1.38
VPS28-203ENST00000524521 KCNJ6P48051 423 aa23.7■■□□□ 1.38
VPS28-203ENST00000524521 FAM160B1Q5W0V3 765 aa23.7■■□□□ 1.38
VPS28-203ENST00000524521 SWSAP1Q6NVH7 229 aa23.7■■□□□ 1.38
VPS28-203ENST00000524521 MIS18BP1Q6P0N0 1132 aa23.7■■□□□ 1.38
VPS28-203ENST00000524521 RUFY4Q6ZNE9 571 aa23.7■■□□□ 1.38
VPS28-203ENST00000524521 WASF1Q92558 559 aa23.7■■□□□ 1.38
VPS28-203ENST00000524521 LENG9Q96B70 501 aa23.7■■□□□ 1.38
VPS28-203ENST00000524521 NKX2-4Q9H2Z4 354 aa23.7■■□□□ 1.38
VPS28-203ENST00000524521 GJB4Q9NTQ9 266 aa23.7■■□□□ 1.38
VPS28-203ENST00000524521 TUBE1Q9UJT0 475 aa23.7■■□□□ 1.38
VPS28-203ENST00000524521 YBX2Q9Y2T7 364 aaKnown RBP23.7■■□□□ 1.38
VPS28-203ENST00000524521 IGKV6D-21A0A0A0MT36 114 aa23.69■■□□□ 1.38
VPS28-203ENST00000524521 NONOQ15233 471 aaKnown RBP eCLIP23.69■■□□□ 1.38
VPS28-203ENST00000524521 TCTN1Q2MV58 587 aa23.69■■□□□ 1.38
VPS28-203ENST00000524521 MARCH8Q5T0T0 291 aa23.69■■□□□ 1.38
VPS28-203ENST00000524521 ZNF746Q6NUN9 644 aaPredicted RBP23.69■■□□□ 1.38
VPS28-203ENST00000524521 KRT25Q7Z3Z0 450 aa23.69■■□□□ 1.38
VPS28-203ENST00000524521 PHOSPHO2Q8TCD6 241 aa23.69■■□□□ 1.38
VPS28-203ENST00000524521 SLC9A7Q96T83 725 aa23.69■■□□□ 1.38
VPS28-203ENST00000524521 SLC28A3Q9HAS3 691 aa23.69■■□□□ 1.38
VPS28-203ENST00000524521 ZNF302Q9NR11 478 aa23.69■■□□□ 1.38
VPS28-203ENST00000524521 POTEB3A0JP26 581 aa23.68■■□□□ 1.38
VPS28-203ENST00000524521 MSH4O15457 936 aa23.68■■□□□ 1.38
VPS28-203ENST00000524521 FDPSP14324 419 aaKnown RBP23.68■■□□□ 1.38
VPS28-203ENST00000524521 MYOGP15173 224 aa23.68■■□□□ 1.38
VPS28-203ENST00000524521 SLC26A2P50443 739 aa23.68■■□□□ 1.38
VPS28-203ENST00000524521 KRT76Q01546 638 aa23.68■■□□□ 1.38
VPS28-203ENST00000524521 IKBKEQ14164 716 aa23.68■■□□□ 1.38
VPS28-203ENST00000524521 GRIN2CQ14957 1233 aa23.68■■□□□ 1.38
VPS28-203ENST00000524521 TAF2Q6P1X5 1199 aa23.68■■□□□ 1.38
VPS28-203ENST00000524521 POTEBQ6S5H4 581 aa23.68■■□□□ 1.38
VPS28-203ENST00000524521 RSPH3Q86UC2 560 aa23.68■■□□□ 1.38
VPS28-203ENST00000524521 CCDC60Q8IWA6 550 aaPredicted RBP23.68■■□□□ 1.38
VPS28-203ENST00000524521 DBF4BQ8NFT6 615 aa23.68■■□□□ 1.38
VPS28-203ENST00000524521 MYLIPQ8WY64 445 aa23.68■■□□□ 1.38
VPS28-203ENST00000524521 PCDHA11Q9Y5I1 949 aa23.68■■□□□ 1.38
VPS28-203ENST00000524521 CCDC194A0A1B0GVG4 234 aa23.67■■□□□ 1.38
VPS28-203ENST00000524521 ABHD14A-ACY1A0A1B0GW23 586 aa23.67■■□□□ 1.38
VPS28-203ENST00000524521 MBLAC1A4D2B0 266 aaPredicted RBP23.67■■□□□ 1.38
VPS28-203ENST00000524521 WDR5P61964 334 aaKnown RBP23.67■■□□□ 1.38
VPS28-203ENST00000524521 INF2Q27J81 1249 aa23.67■■□□□ 1.38
VPS28-203ENST00000524521 PDXDC2PQ6P474 469 aa23.67■■□□□ 1.38
VPS28-203ENST00000524521 NSUN7Q8NE18 718 aaKnown RBP23.67■■□□□ 1.38
VPS28-203ENST00000524521 TRAPPC12Q8WVT3 735 aa23.67■■□□□ 1.38
VPS28-203ENST00000524521 DNAJB3Q8WWF6 145 aa23.67■■□□□ 1.38
VPS28-203ENST00000524521 ZBTB10Q96DT7 871 aa23.67■■□□□ 1.38
VPS28-203ENST00000524521 SAMM50Q9Y512 469 aa23.67■■□□□ 1.38
VPS28-203ENST00000524521 PCDHA10Q9Y5I2 948 aa23.67■■□□□ 1.38
VPS28-203ENST00000524521 TDP2O95551 362 aa23.66■■□□□ 1.38
VPS28-203ENST00000524521 PSAPP07602 524 aa23.66■■□□□ 1.38
VPS28-203ENST00000524521 Q4G0T1 1027 aa23.66■■□□□ 1.38
VPS28-203ENST00000524521 FAM26DQ5JW98 314 aa23.66■■□□□ 1.38
VPS28-203ENST00000524521 HERC6Q8IVU3 1022 aa23.66■■□□□ 1.38
VPS28-203ENST00000524521 CKAP2LQ8IYA6 745 aa23.66■■□□□ 1.38
VPS28-203ENST00000524521 SMAP1Q8IYB5 467 aaPredicted RBP23.66■■□□□ 1.38
VPS28-203ENST00000524521 OSBPL7Q9BZF2 842 aa23.66■■□□□ 1.38
VPS28-203ENST00000524521 LIMCH1Q9UPQ0 1083 aa23.66■■□□□ 1.38
VPS28-203ENST00000524521 LAMA2P24043 3122 aaKnown RBP23.66■■□□□ 1.38
VPS28-203ENST00000524521 GBF1Q92538 1859 aa23.66■■□□□ 1.38
VPS28-203ENST00000524521 CYP3A7-CYP3A51PA0A087WV96 503 aa23.65■■□□□ 1.38
VPS28-203ENST00000524521 KIF28PB7ZC32 967 aa23.65■■□□□ 1.38
VPS28-203ENST00000524521 HBP1O60381 514 aa23.65■■□□□ 1.38
VPS28-203ENST00000524521 GAS7O60861 476 aa23.65■■□□□ 1.38
VPS28-203ENST00000524521 EFCAB14O75071 495 aa23.65■■□□□ 1.38
VPS28-203ENST00000524521 CYP3A7P24462 503 aa23.65■■□□□ 1.38
VPS28-203ENST00000524521 PLEKHG4Q58EX7 1191 aa23.65■■□□□ 1.38
VPS28-203ENST00000524521 RPAINQ86UA6 219 aa23.65■■□□□ 1.38
VPS28-203ENST00000524521 OXER1Q8TDS5 423 aa23.65■■□□□ 1.38
VPS28-203ENST00000524521 ATP8B4Q8TF62 1192 aa23.65■■□□□ 1.38
VPS28-203ENST00000524521 SLC5A5Q92911 643 aa23.65■■□□□ 1.38
VPS28-203ENST00000524521 GJA10Q969M2 543 aa23.65■■□□□ 1.38
VPS28-203ENST00000524521 RIT2Q99578 217 aa23.65■■□□□ 1.38
VPS28-203ENST00000524521 FAM49AQ9H0Q0 323 aaPredicted RBP23.65■■□□□ 1.38
VPS28-203ENST00000524521 JAK2O60674 1132 aa23.64■■□□□ 1.37
VPS28-203ENST00000524521 CHRNA1P02708 482 aa23.64■■□□□ 1.37
VPS28-203ENST00000524521 DEFB103AP81534 67 aa23.64■■□□□ 1.37
VPS28-203ENST00000524521 LETM2Q2VYF4 491 aa23.64■■□□□ 1.37
VPS28-203ENST00000524521 LRCH2Q5VUJ6 765 aa23.64■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms