RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 ASCL5Q7RTU5 278 aa13.46□□□□□ -0.25
SDCBP-211ENST00000523441 RSPH3Q86UC2 560 aa13.46□□□□□ -0.25
SDCBP-211ENST00000523441 LINC01599Q8WXQ3 324 aa13.46□□□□□ -0.25
SDCBP-211ENST00000523441 ZNF689Q96CS4 500 aaPredicted RBP13.46□□□□□ -0.25
SDCBP-211ENST00000523441 UBAC1Q9BSL1 405 aa13.46□□□□□ -0.25
SDCBP-211ENST00000523441 PLVAPQ9BX97 442 aa13.46□□□□□ -0.25
SDCBP-211ENST00000523441 ZSWIM5Q9P217 1185 aa13.46□□□□□ -0.25
SDCBP-211ENST00000523441 CDH22Q9UJ99 828 aa13.46□□□□□ -0.25
SDCBP-211ENST00000523441 LRFN2Q9ULH4 789 aa13.46□□□□□ -0.25
SDCBP-211ENST00000523441 ZMYM6O95789 1325 aa13.45□□□□□ -0.26
SDCBP-211ENST00000523441 PDE1AP54750 535 aa13.45□□□□□ -0.26
SDCBP-211ENST00000523441 MRPS9P82933 396 aaKnown RBP13.45□□□□□ -0.26
SDCBP-211ENST00000523441 COASYQ13057 564 aa13.45□□□□□ -0.26
SDCBP-211ENST00000523441 SEMA3FQ13275 785 aa13.45□□□□□ -0.26
SDCBP-211ENST00000523441 GRIK4Q16099 956 aa13.45□□□□□ -0.26
SDCBP-211ENST00000523441 CCDC178Q5BJE1 867 aa13.45□□□□□ -0.26
SDCBP-211ENST00000523441 FBXO47Q5MNV8 452 aa13.45□□□□□ -0.26
SDCBP-211ENST00000523441 METTL7BQ6UX53 244 aa13.45□□□□□ -0.26
SDCBP-211ENST00000523441 ASIC4Q96FT7 647 aa13.45□□□□□ -0.26
SDCBP-211ENST00000523441 MAF1Q9H063 256 aa13.45□□□□□ -0.26
SDCBP-211ENST00000523441 EHMT1Q9H9B1 1298 aa13.45□□□□□ -0.26
SDCBP-211ENST00000523441 AGO3Q9H9G7 860 aaKnown RBP13.45□□□□□ -0.26
SDCBP-211ENST00000523441 TUBE1Q9UJT0 475 aa13.45□□□□□ -0.26
SDCBP-211ENST00000523441 NRCAMQ92823 1304 aa13.44□□□□□ -0.26
SDCBP-211ENST00000523441 SALL3Q9BXA9 1300 aa13.44□□□□□ -0.26
SDCBP-211ENST00000523441 MYO15AQ9UKN7 3530 aa13.44□□□□□ -0.26
SDCBP-211ENST00000523441 PCP11498 1178 aaKnown RBP13.44□□□□□ -0.26
SDCBP-211ENST00000523441 TCF7P36402 384 aaPredicted RBP13.44□□□□□ -0.26
SDCBP-211ENST00000523441 MGAT3Q09327 533 aa13.44□□□□□ -0.26
SDCBP-211ENST00000523441 APOBRQ0VD83 1088 aa13.44□□□□□ -0.26
SDCBP-211ENST00000523441 PTPN21Q16825 1174 aa13.44□□□□□ -0.26
SDCBP-211ENST00000523441 CWC27Q6UX04 472 aaKnown RBP13.44□□□□□ -0.26
SDCBP-211ENST00000523441 TSHZ1Q6ZSZ6 1077 aa13.44□□□□□ -0.26
SDCBP-211ENST00000523441 RTN4RL1Q86UN2 441 aaPredicted RBP13.44□□□□□ -0.26
SDCBP-211ENST00000523441 CMTR2Q8IYT2 770 aaKnown RBP13.44□□□□□ -0.26
SDCBP-211ENST00000523441 VN1R2Q8NFZ6 395 aa13.44□□□□□ -0.26
SDCBP-211ENST00000523441 GLG1Q92896 1179 aa13.44□□□□□ -0.26
SDCBP-211ENST00000523441 P2RX5Q93086 422 aa13.44□□□□□ -0.26
SDCBP-211ENST00000523441 SMOC2Q9H3U7 446 aa13.44□□□□□ -0.26
SDCBP-211ENST00000523441 HCSTQ9UBK5 93 aa13.44□□□□□ -0.26
SDCBP-211ENST00000523441 MAD2L2Q9UI95 211 aa13.44□□□□□ -0.26
SDCBP-211ENST00000523441 GINS2Q9Y248 185 aa13.44□□□□□ -0.26
SDCBP-211ENST00000523441 MYO10Q9HD67 2058 aa13.43□□□□□ -0.26
SDCBP-211ENST00000523441 SPATA31C2B4DYI2 1134 aa13.43□□□□□ -0.26
SDCBP-211ENST00000523441 FIBPO43427 364 aa13.43□□□□□ -0.26
SDCBP-211ENST00000523441 ICAM3P32942 547 aa13.43□□□□□ -0.26
SDCBP-211ENST00000523441 CA8P35219 290 aa13.43□□□□□ -0.26
SDCBP-211ENST00000523441 TECP42680 631 aa13.43□□□□□ -0.26
SDCBP-211ENST00000523441 ADAM17P78536 824 aa13.43□□□□□ -0.26
SDCBP-211ENST00000523441 MRPS6P82932 125 aaKnown RBP13.43□□□□□ -0.26
SDCBP-211ENST00000523441 CBX2Q14781 532 aaPredicted RBP13.43□□□□□ -0.26
SDCBP-211ENST00000523441 TMEM266Q2M3C6 531 aa13.43□□□□□ -0.26
SDCBP-211ENST00000523441 FNDC1Q4ZHG4 1894 aaPredicted RBP13.43□□□□□ -0.26
SDCBP-211ENST00000523441 PLPP4Q5VZY2 271 aa13.43□□□□□ -0.26
SDCBP-211ENST00000523441 NPAS4Q8IUM7 802 aa13.43□□□□□ -0.26
SDCBP-211ENST00000523441 NEK1Q96PY6 1258 aa13.43□□□□□ -0.26
SDCBP-211ENST00000523441 TRPC6Q9Y210 931 aa13.43□□□□□ -0.26
SDCBP-211ENST00000523441 TBKBP1A7MCY6 615 aa13.42□□□□□ -0.26
SDCBP-211ENST00000523441 STAG3L1P0CL83 205 aa13.42□□□□□ -0.26
SDCBP-211ENST00000523441 SCG2P13521 617 aa13.42□□□□□ -0.26
SDCBP-211ENST00000523441 MFAP1P55081 439 aaKnown RBP13.42□□□□□ -0.26
SDCBP-211ENST00000523441 ERVFC1P60507 584 aa13.42□□□□□ -0.26
SDCBP-211ENST00000523441 NFX1Q12986 1120 aaKnown RBP13.42□□□□□ -0.26
SDCBP-211ENST00000523441 PAK2Q13177 524 aa13.42□□□□□ -0.26
SDCBP-211ENST00000523441 TAF2Q6P1X5 1199 aa13.42□□□□□ -0.26
SDCBP-211ENST00000523441 FRMD5Q7Z6J6 570 aa13.42□□□□□ -0.26
SDCBP-211ENST00000523441 THNSL1Q8IYQ7 743 aa13.42□□□□□ -0.26
SDCBP-211ENST00000523441 KREMEN2Q8NCW0 462 aa13.42□□□□□ -0.26
SDCBP-211ENST00000523441 SMARCC2Q8TAQ2 1214 aa13.42□□□□□ -0.26
SDCBP-211ENST00000523441 TRAPPC12Q8WVT3 735 aa13.42□□□□□ -0.26
SDCBP-211ENST00000523441 RIPOR3Q96MK2 946 aa13.42□□□□□ -0.26
SDCBP-211ENST00000523441 IRF2BPLQ9H1B7 796 aa13.42□□□□□ -0.26
SDCBP-211ENST00000523441 TMEM260Q9NX78 707 aa13.42□□□□□ -0.26
SDCBP-211ENST00000523441 MAP3K20Q9NYL2 800 aaKnown RBP13.42□□□□□ -0.26
SDCBP-211ENST00000523441 PADI3Q9ULW8 664 aa13.42□□□□□ -0.26
SDCBP-211ENST00000523441 PTPRZ1P23471 2315 aaPredicted RBP13.41□□□□□ -0.26
SDCBP-211ENST00000523441 PRR23AA6NEV1 266 aa13.41□□□□□ -0.26
SDCBP-211ENST00000523441 M0QZ92 97 aa13.41□□□□□ -0.26
SDCBP-211ENST00000523441 GALR2O43603 387 aaPredicted RBP13.41□□□□□ -0.26
SDCBP-211ENST00000523441 SDSP20132 328 aa13.41□□□□□ -0.26
SDCBP-211ENST00000523441 IMMTQ16891 758 aaKnown RBP13.41□□□□□ -0.26
SDCBP-211ENST00000523441 SLC35G1Q2M3R5 365 aa13.41□□□□□ -0.26
SDCBP-211ENST00000523441 USP17L6PQ6QN14 398 aa13.41□□□□□ -0.26
SDCBP-211ENST00000523441 CYB5R4Q7L1T6 521 aa13.41□□□□□ -0.26
SDCBP-211ENST00000523441 INPP4AQ96PE3 977 aaPredicted RBP13.41□□□□□ -0.26
SDCBP-211ENST00000523441 PPP1R16BQ96T49 567 aa13.41□□□□□ -0.26
SDCBP-211ENST00000523441 KRT23Q9C075 422 aa13.41□□□□□ -0.26
SDCBP-211ENST00000523441 LNPKQ9C0E8 428 aa13.41□□□□□ -0.26
SDCBP-211ENST00000523441 ENTPD7Q9NQZ7 604 aa13.41□□□□□ -0.26
SDCBP-211ENST00000523441 PCDHB12Q9Y5F1 795 aa13.41□□□□□ -0.26
SDCBP-211ENST00000523441 CACNA1HO95180 2353 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 ATP9AO75110 1047 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 FGF18O76093 207 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 WEE2P0C1S8 567 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 FOXK2Q01167 660 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 GHRHRQ02643 423 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 NAALADL2Q58DX5 795 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 MARCH8Q5T0T0 291 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 FAM102BQ5T8I3 360 aa13.4□□□□□ -0.26
SDCBP-211ENST00000523441 IER5Q5VY09 327 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms